Wall clock time and date at job start Mon Mar 30 2020 01:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00171 * 2 1 4 4 H 1.48497 * 109.47632 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47303 * 300.00771 * 3 2 1 6 6 H 1.48502 * 109.46928 * 60.00128 * 3 2 1 7 7 C 1.37876 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00194 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99696 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.47373 * 299.99845 * 9 7 2 11 11 C 1.53001 * 109.47700 * 59.99877 * 9 7 2 12 12 Cl 1.80299 * 109.47470 * 184.99811 * 11 9 7 13 13 O 1.42899 * 109.46936 * 180.02562 * 9 7 2 14 14 C 1.42909 * 114.00061 * 149.99932 * 13 9 7 15 15 C 1.53002 * 109.46953 * 179.97438 * 14 13 9 16 16 C 1.52996 * 109.47162 * 179.97438 * 15 14 13 17 17 N 1.46897 * 109.47199 * 180.02562 * 16 15 14 18 18 C 1.46843 * 111.00054 * 294.21079 * 17 16 15 19 19 C 1.53031 * 109.52356 * 174.16095 * 18 17 16 20 20 C 1.53125 * 109.28013 * 59.18331 * 19 18 17 21 21 C 1.53126 * 109.15503 * 302.34471 * 20 19 18 22 22 C 1.46853 * 110.99861 * 170.00139 * 17 16 15 23 23 H 0.97003 * 120.00225 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46652 * 64.99992 * 11 9 7 25 25 H 1.08996 * 109.46778 * 305.00190 * 11 9 7 26 26 H 1.08994 * 109.46687 * 299.99689 * 14 13 9 27 27 H 1.09004 * 109.47009 * 59.99893 * 14 13 9 28 28 H 1.08994 * 109.47456 * 300.00179 * 15 14 13 29 29 H 1.09011 * 109.46720 * 60.00039 * 15 14 13 30 30 H 1.09004 * 109.47350 * 300.00740 * 16 15 14 31 31 H 1.09002 * 109.46760 * 59.99976 * 16 15 14 32 32 H 1.09001 * 109.46101 * 294.17857 * 18 17 16 33 33 H 1.08998 * 109.46439 * 54.14804 * 18 17 16 34 34 H 1.09001 * 109.50619 * 299.24250 * 19 18 17 35 35 H 1.09006 * 109.50607 * 179.11726 * 19 18 17 36 36 H 1.08996 * 109.52572 * 182.44521 * 20 19 18 37 37 H 1.08998 * 109.52654 * 62.24745 * 20 19 18 38 38 H 1.08999 * 109.50129 * 297.70694 * 21 20 19 39 39 H 1.09002 * 109.50096 * 177.59222 * 21 20 19 40 40 H 1.09001 * 109.46083 * 305.85932 * 22 17 16 41 41 H 1.08997 * 109.45982 * 65.82654 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8897 11 6 0.3708 -2.5800 -1.2494 12 17 -0.6396 -4.0715 -1.1771 13 8 2.1796 -3.5853 -0.0005 14 6 1.6980 -4.7618 0.6522 15 6 2.7684 -5.8533 0.5912 16 6 2.2531 -7.1127 1.2906 17 7 3.2811 -8.1604 1.2326 18 6 3.5138 -8.5933 -0.1511 19 6 4.6869 -9.5752 -0.1894 20 6 4.3646 -10.7827 0.6954 21 6 4.0789 -10.2996 2.1201 22 6 2.9234 -9.2967 2.0915 23 1 -0.4850 0.8401 -0.0004 24 1 1.0022 -2.6116 -2.1374 25 1 -0.2766 -1.7043 -1.2948 26 1 1.4712 -4.5325 1.6934 27 1 0.7946 -5.1109 0.1519 28 1 2.9949 -6.0824 -0.4500 29 1 3.6720 -5.5043 1.0913 30 1 2.0269 -6.8832 2.3320 31 1 1.3494 -7.4617 0.7910 32 1 2.6181 -9.0824 -0.5341 33 1 3.7461 -7.7258 -0.7689 34 1 5.5861 -9.0826 0.1807 35 1 4.8493 -9.9084 -1.2145 36 1 5.2151 -11.4642 0.7056 37 1 3.4881 -11.2983 0.3030 38 1 4.9686 -9.8185 2.5265 39 1 3.8070 -11.1502 2.7451 40 1 2.7268 -8.9399 3.1025 41 1 2.0306 -9.7824 1.6979 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224861235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:19 Heat of formation + Delta-G solvation = -79.891671 kcal Electronic energy + Delta-G solvation = -19485.860366 eV Core-core repulsion = 16425.489385 eV Total energy + Delta-G solvation = -3060.370981 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.139 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.11492 -37.21153 -34.86144 -34.40302 -33.18501 -31.18026 -30.72745 -28.77216 -25.48732 -25.14591 -23.31579 -22.74137 -20.91015 -20.55710 -19.79950 -16.65190 -16.30097 -15.67644 -15.43501 -14.92620 -14.57526 -14.49633 -14.18612 -13.73047 -13.57276 -13.27577 -13.03466 -12.51703 -12.29950 -11.99476 -11.96497 -11.48514 -11.38409 -11.28152 -11.05009 -10.88054 -10.84280 -10.73473 -10.53549 -10.45114 -10.37262 -10.15798 -9.74503 -9.37865 -9.24897 -8.58900 -8.32399 -8.01715 -6.30209 -4.36027 3.17971 3.27103 3.33155 3.49052 3.80181 4.22650 4.64802 4.70191 4.77171 4.88762 5.04969 5.12058 5.25052 5.30638 5.38576 5.48332 5.52133 5.65035 5.68656 5.73789 5.77970 5.87840 5.93654 5.97598 6.02426 6.17241 6.21591 6.26996 6.41539 6.47542 6.57043 6.71450 6.96408 7.09866 7.11645 7.34269 7.66991 7.98495 8.42985 8.83989 9.32043 10.77041 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027446 B = 0.003540 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.954247 B = 7907.847684 C = 8455.904857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.214 3.786 10 H 0.030 0.970 11 C -0.030 4.030 12 Cl -0.253 7.253 13 O -0.388 6.388 14 C 0.051 3.949 15 C -0.111 4.111 16 C 0.060 3.940 17 N -0.537 5.537 18 C 0.050 3.950 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.116 4.116 22 C 0.055 3.945 23 H 0.268 0.732 24 H 0.071 0.929 25 H 0.127 0.873 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.533 -16.624 1.443 17.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.738 3.262 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.551 4.551 8 H 0.092 0.908 9 C 0.157 3.843 10 H 0.048 0.952 11 C -0.092 4.092 12 Cl -0.227 7.227 13 O -0.307 6.307 14 C -0.027 4.027 15 C -0.149 4.149 16 C -0.067 4.067 17 N -0.262 5.262 18 C -0.077 4.077 19 C -0.155 4.155 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.073 4.073 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.145 0.855 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.920 -16.388 1.542 17.180 hybrid contribution -0.818 0.486 -0.248 0.983 sum 4.102 -15.902 1.294 16.474 Atomic orbital electron populations 1.69824 1.05973 1.27537 1.49728 1.25011 0.95131 0.99785 0.94387 0.86204 0.80086 0.82075 0.77787 1.19345 1.20705 1.20673 1.21154 0.94266 0.88464 1.51191 0.90817 1.19972 0.87419 0.84704 0.92186 0.95185 1.25899 0.95144 0.85363 1.02798 1.98594 1.76085 1.49085 1.98982 1.87827 1.43432 1.21764 1.77701 1.22612 0.96860 0.86990 0.96234 1.21460 0.99504 0.93021 1.00905 1.21996 0.92156 0.91532 1.01053 1.61890 1.44808 1.10353 1.09155 1.22164 0.97182 0.98682 0.89718 1.21591 0.98842 0.95629 0.99425 1.21585 1.01114 0.97558 0.95654 1.21582 0.99130 0.97890 0.96821 1.22074 0.96317 0.91359 0.97567 0.92188 0.91079 0.85507 0.94860 0.92203 0.91678 0.90893 0.90732 0.94855 0.95161 0.89999 0.91037 0.91721 0.92017 0.92484 0.91059 0.91819 0.90813 0.95199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.10 11.29 55.43 0.63 -23.48 16 2 C 0.06 1.56 5.29 -17.82 -0.09 1.46 16 3 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.51 -13.91 8.89 -34.44 -0.31 -14.22 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.21 5.43 2.38 -27.88 -0.07 5.36 16 10 H 0.03 0.82 7.79 -51.93 -0.40 0.42 16 11 C -0.03 -0.70 6.17 37.16 0.23 -0.47 16 12 Cl -0.25 -5.28 26.09 -51.86 -1.35 -6.64 16 13 O -0.39 -9.17 9.95 -35.23 -0.35 -9.52 16 14 C 0.05 0.99 5.54 37.16 0.21 1.20 16 15 C -0.11 -1.80 5.51 -26.73 -0.15 -1.94 16 16 C 0.06 0.82 4.96 -3.83 -0.02 0.80 16 17 N -0.54 -6.70 4.66 -234.68 -1.09 -7.79 16 18 C 0.05 0.59 5.29 -3.84 -0.02 0.57 16 19 C -0.12 -1.13 6.09 -26.65 -0.16 -1.30 16 20 C -0.12 -1.05 6.00 -26.60 -0.16 -1.21 16 21 C -0.12 -1.04 6.09 -26.65 -0.16 -1.20 16 22 C 0.05 0.58 5.46 -3.83 -0.02 0.56 16 23 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 24 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 25 H 0.13 3.22 5.95 -51.93 -0.31 2.92 16 26 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 27 H 0.06 1.17 5.09 -51.93 -0.26 0.90 16 28 H 0.06 1.06 6.43 -51.93 -0.33 0.72 16 29 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 30 H 0.07 0.98 7.99 -51.93 -0.41 0.56 16 31 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 1.02 6.21 -51.93 -0.32 0.69 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.74 8.01 -51.93 -0.42 0.32 16 41 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -27.05 331.76 -9.99 -37.04 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.08 Total: 0.29 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -0.72 Total: -10.39 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: -0.47 Total: -31.27 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.35 Total: -9.52 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -5.28 SS G_CDS: -1.35 Total: -6.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.05 -9.99 -37.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224861235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.852 kcal (2) G-P(sol) polarization free energy of solvation -27.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds