Wall clock time and date at job start Mon Mar 30 2020 01:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00171 * 2 1 4 4 H 1.48497 * 109.47632 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47303 * 300.00771 * 3 2 1 6 6 H 1.48502 * 109.46928 * 60.00128 * 3 2 1 7 7 C 1.37876 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00194 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99696 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.47373 * 299.99845 * 9 7 2 11 11 C 1.53001 * 109.47700 * 59.99877 * 9 7 2 12 12 Cl 1.80299 * 109.47470 * 184.99811 * 11 9 7 13 13 O 1.42899 * 109.46936 * 180.02562 * 9 7 2 14 14 C 1.42909 * 114.00061 * 149.99932 * 13 9 7 15 15 C 1.53002 * 109.46953 * 179.97438 * 14 13 9 16 16 C 1.52996 * 109.47162 * 179.97438 * 15 14 13 17 17 N 1.46897 * 109.47199 * 180.02562 * 16 15 14 18 18 C 1.46843 * 111.00054 * 294.21079 * 17 16 15 19 19 C 1.53031 * 109.52356 * 174.16095 * 18 17 16 20 20 C 1.53125 * 109.28013 * 59.18331 * 19 18 17 21 21 C 1.53126 * 109.15503 * 302.34471 * 20 19 18 22 22 C 1.46853 * 110.99861 * 170.00139 * 17 16 15 23 23 H 0.97003 * 120.00225 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46652 * 64.99992 * 11 9 7 25 25 H 1.08996 * 109.46778 * 305.00190 * 11 9 7 26 26 H 1.08994 * 109.46687 * 299.99689 * 14 13 9 27 27 H 1.09004 * 109.47009 * 59.99893 * 14 13 9 28 28 H 1.08994 * 109.47456 * 300.00179 * 15 14 13 29 29 H 1.09011 * 109.46720 * 60.00039 * 15 14 13 30 30 H 1.09004 * 109.47350 * 300.00740 * 16 15 14 31 31 H 1.09002 * 109.46760 * 59.99976 * 16 15 14 32 32 H 1.09001 * 109.46101 * 294.17857 * 18 17 16 33 33 H 1.08998 * 109.46439 * 54.14804 * 18 17 16 34 34 H 1.09001 * 109.50619 * 299.24250 * 19 18 17 35 35 H 1.09006 * 109.50607 * 179.11726 * 19 18 17 36 36 H 1.08996 * 109.52572 * 182.44521 * 20 19 18 37 37 H 1.08998 * 109.52654 * 62.24745 * 20 19 18 38 38 H 1.08999 * 109.50129 * 297.70694 * 21 20 19 39 39 H 1.09002 * 109.50096 * 177.59222 * 21 20 19 40 40 H 1.09001 * 109.46083 * 305.85932 * 22 17 16 41 41 H 1.08997 * 109.45982 * 65.82654 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8897 11 6 0.3708 -2.5800 -1.2494 12 17 -0.6396 -4.0715 -1.1771 13 8 2.1796 -3.5853 -0.0005 14 6 1.6980 -4.7618 0.6522 15 6 2.7684 -5.8533 0.5912 16 6 2.2531 -7.1127 1.2906 17 7 3.2811 -8.1604 1.2326 18 6 3.5138 -8.5933 -0.1511 19 6 4.6869 -9.5752 -0.1894 20 6 4.3646 -10.7827 0.6954 21 6 4.0789 -10.2996 2.1201 22 6 2.9234 -9.2967 2.0915 23 1 -0.4850 0.8401 -0.0004 24 1 1.0022 -2.6116 -2.1374 25 1 -0.2766 -1.7043 -1.2948 26 1 1.4712 -4.5325 1.6934 27 1 0.7946 -5.1109 0.1519 28 1 2.9949 -6.0824 -0.4500 29 1 3.6720 -5.5043 1.0913 30 1 2.0269 -6.8832 2.3320 31 1 1.3494 -7.4617 0.7910 32 1 2.6181 -9.0824 -0.5341 33 1 3.7461 -7.7258 -0.7689 34 1 5.5861 -9.0826 0.1807 35 1 4.8493 -9.9084 -1.2145 36 1 5.2151 -11.4642 0.7056 37 1 3.4881 -11.2983 0.3030 38 1 4.9686 -9.8185 2.5265 39 1 3.8070 -11.1502 2.7451 40 1 2.7268 -8.9399 3.1025 41 1 2.0306 -9.7824 1.6979 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224861235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:19 Heat of formation + Delta-G solvation = -94.615994 kcal Electronic energy + Delta-G solvation = -19486.498860 eV Core-core repulsion = 16425.489385 eV Total energy + Delta-G solvation = -3061.009476 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.139 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.04741 -38.98982 -36.57001 -35.74618 -34.95799 -32.38946 -31.70113 -30.56625 -27.24743 -26.57620 -24.27577 -23.76039 -22.82344 -21.83625 -20.59821 -18.64768 -17.75719 -17.07413 -16.90914 -16.32635 -15.98894 -15.47836 -15.33390 -15.23521 -14.67430 -14.47271 -14.28393 -14.01869 -13.86348 -13.48634 -13.17935 -13.05652 -12.84450 -12.73854 -12.49513 -12.37034 -12.21195 -12.11212 -11.88098 -11.55931 -11.51677 -11.28419 -11.24168 -11.19676 -11.09148 -10.58645 -9.84125 -9.29093 -8.31947 -6.46743 1.39735 1.44011 1.57093 1.62147 2.34101 2.75735 3.00207 3.32825 3.88234 3.90468 4.02448 4.10532 4.22774 4.34148 4.37411 4.43582 4.46304 4.50754 4.56321 4.62718 4.67545 4.73338 4.79280 4.86174 4.93380 4.95273 5.05734 5.09768 5.20396 5.24094 5.28135 5.31947 5.36349 5.49628 5.60044 5.96896 6.10137 6.19384 6.48926 6.83293 7.26643 8.74947 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027446 B = 0.003540 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.954247 B = 7907.847684 C = 8455.904857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.021 3.979 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.219 3.781 10 H 0.005 0.995 11 C -0.021 4.021 12 Cl -0.228 7.228 13 O -0.403 6.403 14 C 0.048 3.952 15 C -0.098 4.098 16 C 0.068 3.932 17 N -0.547 5.547 18 C 0.048 3.952 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.114 4.114 22 C 0.052 3.948 23 H 0.273 0.727 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.987 -17.528 1.488 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.162 3.838 10 H 0.022 0.978 11 C -0.084 4.084 12 Cl -0.202 7.202 13 O -0.323 6.323 14 C -0.029 4.029 15 C -0.136 4.136 16 C -0.060 4.060 17 N -0.272 5.272 18 C -0.080 4.080 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.076 4.076 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.128 0.872 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.368 -17.319 1.588 18.201 hybrid contribution -1.004 0.682 -0.242 1.238 sum 4.364 -16.637 1.346 17.252 Atomic orbital electron populations 1.69909 1.07095 1.28634 1.49445 1.25771 0.95946 1.02745 0.93454 0.85222 0.78708 0.77916 0.78156 1.19294 1.19714 1.20030 1.21359 0.93986 0.89959 1.52753 0.91949 1.19752 0.87331 0.84978 0.91722 0.97763 1.25502 0.94916 0.85975 1.02025 1.98589 1.75298 1.47356 1.98965 1.87798 1.43610 1.22590 1.78297 1.22784 0.98096 0.86361 0.95659 1.21345 0.98068 0.93067 1.01163 1.21855 0.92370 0.90846 1.00897 1.61890 1.44316 1.11017 1.09944 1.22204 0.98025 0.98682 0.89096 1.21584 0.97544 0.95589 1.00524 1.21588 1.01868 0.97194 0.95062 1.21582 0.98151 0.97967 0.97425 1.22176 0.97156 0.91011 0.97246 0.91718 0.90832 0.87163 0.95120 0.92136 0.91806 0.91718 0.90218 0.94845 0.95204 0.91306 0.91725 0.90515 0.90534 0.92172 0.91649 0.89979 0.90467 0.95030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.41 11.29 21.45 0.24 -49.17 16 2 C 0.02 1.12 5.29 84.65 0.45 1.57 16 3 Si 0.98 41.79 29.54 68.60 2.03 43.81 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.54 -29.93 8.89 25.60 0.23 -29.70 16 8 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 9 C 0.22 11.34 2.38 29.85 0.07 11.41 16 10 H 0.00 0.26 7.79 -2.38 -0.02 0.24 16 11 C -0.02 -1.01 6.17 71.98 0.44 -0.57 16 12 Cl -0.23 -9.40 26.09 -2.72 -0.07 -9.48 16 13 O -0.40 -19.39 9.95 -148.98 -1.48 -20.87 16 14 C 0.05 1.89 5.54 71.98 0.40 2.29 16 15 C -0.10 -3.18 5.51 30.59 0.17 -3.01 16 16 C 0.07 1.81 4.96 86.30 0.43 2.24 16 17 N -0.55 -13.08 4.66 -896.39 -4.17 -17.26 16 18 C 0.05 1.06 5.29 86.32 0.46 1.52 16 19 C -0.11 -2.04 6.09 30.65 0.19 -1.86 16 20 C -0.12 -1.79 6.00 30.68 0.18 -1.60 16 21 C -0.11 -1.78 6.09 30.65 0.19 -1.60 16 22 C 0.05 1.00 5.46 86.32 0.47 1.47 16 23 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 24 H 0.07 3.42 8.14 -2.39 -0.02 3.40 16 25 H 0.11 5.67 5.95 -2.39 -0.01 5.66 16 26 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 27 H 0.06 2.35 5.09 -2.39 -0.01 2.34 16 28 H 0.06 2.07 6.43 -2.39 -0.02 2.06 16 29 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.08 2.03 7.99 -2.38 -0.02 2.01 16 31 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 32 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 1.69 6.21 -2.39 -0.01 1.67 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.43 8.01 -2.39 -0.02 1.41 16 41 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -56.86 331.76 1.19 -55.67 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.98 Total: 15.12 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 3.67 Total: -17.83 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -3.93 Total: -66.43 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -1.48 Total: -20.87 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 17 Polarization: -9.40 SS G_CDS: -0.07 Total: -9.48 kcal Total: -56.86 1.19 -55.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224861235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.944 kcal (2) G-P(sol) polarization free energy of solvation -56.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds