Wall clock time and date at job start Mon Mar 30 2020 01:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 120.00066 * 2 1 4 4 H 1.48496 * 109.47493 * 90.00168 * 3 2 1 5 5 H 1.48503 * 109.47334 * 210.00454 * 3 2 1 6 6 H 1.48504 * 109.47236 * 330.00213 * 3 2 1 7 7 C 1.38818 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99687 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00294 * 359.97438 * 7 2 1 10 10 C 1.47025 * 125.64834 * 359.69488 * 9 7 2 11 11 C 1.54330 * 107.26495 * 178.84902 * 10 9 7 12 12 C 1.55156 * 103.02178 * 338.13937 * 11 10 9 13 13 H 1.09004 * 111.00259 * 277.23187 * 12 11 10 14 14 O 1.42897 * 111.03752 * 153.39755 * 12 11 10 15 15 C 1.35848 * 117.00190 * 162.33532 * 14 12 11 16 16 C 1.38491 * 120.13062 * 5.31132 * 15 14 12 17 17 C 1.38241 * 120.09538 * 179.97438 * 16 15 14 18 18 C 1.38423 * 120.37140 * 0.02562 * 17 16 15 19 19 C 1.37934 * 120.27176 * 0.03879 * 18 17 16 20 20 C 1.39646 * 119.89262 * 359.68350 * 19 18 17 21 21 C 1.47439 * 120.17994 * 180.31829 * 20 19 18 22 22 N 1.29757 * 119.99563 * 180.23099 * 21 20 19 23 23 N 1.40104 * 119.99802 * 180.02562 * 22 21 20 24 24 C 1.47416 * 125.65069 * 180.02562 * 9 7 2 25 25 H 0.96992 * 119.99877 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.87837 * 298.39212 * 10 9 7 27 27 H 1.09000 * 109.88362 * 59.55592 * 10 9 7 28 28 H 1.09003 * 110.85109 * 219.66842 * 11 10 9 29 29 H 1.09004 * 110.66578 * 96.52214 * 11 10 9 30 30 H 1.08001 * 119.95439 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.81353 * 180.02562 * 17 16 15 32 32 H 1.08002 * 119.86845 * 180.02562 * 18 17 16 33 33 H 1.07996 * 120.05222 * 179.97438 * 19 18 17 34 34 H 1.07993 * 119.99993 * 0.22810 * 21 20 19 35 35 H 0.96997 * 119.99729 * 179.97438 * 23 22 21 36 36 H 0.97004 * 119.99703 * 0.02562 * 23 22 21 37 37 H 1.09008 * 110.36360 * 322.93129 * 24 9 7 38 38 H 1.08996 * 110.37276 * 85.14097 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5478 1.4402 -0.7001 6 1 1.4477 2.6527 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0064 11 6 -0.4484 -4.0441 -0.0261 12 6 0.8514 -4.6560 -0.6121 13 1 0.8553 -4.5959 -1.7005 14 8 1.0251 -6.0056 -0.1759 15 6 1.8936 -6.7752 -0.8822 16 6 2.6464 -6.2169 -1.9019 17 6 3.5303 -7.0006 -2.6199 18 6 3.6697 -8.3463 -2.3270 19 6 2.9265 -8.9184 -1.3155 20 6 2.0346 -8.1359 -0.5792 21 6 1.2422 -8.7393 0.5079 22 7 0.4111 -8.0098 1.1868 23 7 -0.3414 -8.5830 2.2203 24 6 1.9334 -3.7311 -0.0005 25 1 -0.4849 0.8400 0.0004 26 1 -0.5498 -2.0868 0.9115 27 1 -0.5619 -2.0499 -0.8738 28 1 -1.2991 -4.2514 -0.6753 29 1 -0.6323 -4.4207 0.9802 30 1 2.5428 -5.1678 -2.1364 31 1 4.1155 -6.5605 -3.4138 32 1 4.3630 -8.9510 -2.8928 33 1 3.0378 -9.9687 -1.0903 34 1 1.3535 -9.7883 0.7391 35 1 -0.9624 -8.0376 2.7280 36 1 -0.2409 -9.5251 2.4284 37 1 2.8327 -3.7405 -0.6165 38 1 2.1687 -4.0412 1.0176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229293951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:34 Heat of formation + Delta-G solvation = 66.273738 kcal Electronic energy + Delta-G solvation = -21022.414924 eV Core-core repulsion = 17867.274657 eV Total energy + Delta-G solvation = -3155.140267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.00652 -37.82262 -36.35166 -35.93907 -32.38886 -31.92772 -30.05855 -29.18037 -28.48521 -27.28409 -24.53772 -23.39589 -22.45162 -20.55268 -20.16034 -19.82082 -17.82476 -17.01588 -16.84073 -16.56754 -15.36485 -15.11298 -14.87518 -14.61330 -14.29050 -13.77164 -13.55760 -13.21999 -12.88087 -12.57936 -12.26552 -12.09852 -11.85048 -11.55702 -11.40237 -10.96478 -10.89671 -10.75034 -10.26622 -10.16520 -10.03098 -9.88651 -9.76016 -9.64820 -9.33117 -8.60276 -8.25654 -7.47315 -6.84751 -5.71560 -3.05741 1.07670 1.61983 2.73058 3.34136 3.40938 3.45536 3.47629 3.62080 4.03065 4.50923 4.75859 4.99007 5.09468 5.28175 5.31974 5.39201 5.46902 5.58951 5.64659 5.66179 5.73291 5.84014 6.01729 6.12561 6.29907 6.42619 6.49682 6.53130 6.56873 6.62109 6.69688 6.75871 6.98306 7.54727 7.60538 7.65500 7.78981 7.90521 8.24491 8.49807 9.20898 9.80737 10.46043 11.40215 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.004634 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.628450 B = 6040.894362 C = 6972.951291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.179 3.821 11 C -0.130 4.130 12 C 0.062 3.938 13 H 0.077 0.923 14 O -0.271 6.271 15 C 0.165 3.835 16 C -0.212 4.212 17 C -0.073 4.073 18 C -0.169 4.169 19 C -0.067 4.067 20 C -0.081 4.081 21 C 0.048 3.952 22 N -0.184 5.184 23 N -0.787 5.787 24 C 0.119 3.881 25 H 0.253 0.747 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.418 0.582 36 H 0.367 0.633 37 H 0.042 0.958 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 -19.005 -2.020 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.216 1.216 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.054 3.946 11 C -0.169 4.169 12 C 0.005 3.995 13 H 0.095 0.905 14 O -0.180 6.180 15 C 0.116 3.884 16 C -0.231 4.231 17 C -0.092 4.092 18 C -0.188 4.188 19 C -0.088 4.088 20 C -0.084 4.084 21 C -0.164 4.164 22 N 0.006 4.994 23 N -0.440 5.440 24 C -0.007 4.007 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.153 0.847 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.123 0.877 35 H 0.252 0.748 36 H 0.197 0.803 37 H 0.060 0.940 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.952 -17.866 -1.694 18.052 hybrid contribution 0.552 -0.013 0.240 0.602 sum 2.504 -17.879 -1.455 18.112 Atomic orbital electron populations 1.69953 1.04897 1.25111 1.57029 1.24808 0.95734 0.97672 1.02138 0.86097 0.78573 0.83364 0.77596 1.21577 1.20652 1.21639 1.19066 0.90480 0.82217 1.43930 0.90359 1.44341 1.01699 0.99602 1.87370 1.21198 0.84406 0.87445 1.01529 1.22950 0.94566 0.98475 1.00878 1.23841 0.98628 0.78581 0.98478 0.90544 1.86363 1.56903 1.23010 1.51773 1.19212 0.89038 0.90146 0.90034 1.21447 1.00772 1.01579 0.99264 1.21027 0.96439 0.93663 0.98074 1.20836 1.02454 0.95344 1.00153 1.20893 0.94407 0.98889 0.94578 1.17696 1.01353 0.90516 0.98809 1.23680 0.98533 0.96400 0.97738 1.74585 1.01897 1.25833 0.97085 1.45821 1.48886 1.11102 1.38150 1.21972 0.94269 0.86546 0.97948 0.93691 0.93432 0.93149 0.91628 0.91123 0.84677 0.85999 0.86076 0.85557 0.87681 0.74839 0.80263 0.94019 0.95327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.21 10.31 55.49 0.57 -26.64 16 2 C -0.01 -0.21 5.49 -17.42 -0.10 -0.30 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.76 3.39 -170.06 -0.58 -16.33 16 10 C 0.18 4.43 5.38 -3.06 -0.02 4.41 16 11 C -0.13 -2.61 6.68 -24.89 -0.17 -2.77 16 12 C 0.06 1.19 2.82 -24.57 -0.07 1.12 16 13 H 0.08 1.42 6.62 -51.93 -0.34 1.07 16 14 O -0.27 -4.92 7.83 -19.26 -0.15 -5.07 16 15 C 0.17 2.67 6.65 -38.79 -0.26 2.41 16 16 C -0.21 -3.15 8.72 -39.49 -0.34 -3.50 16 17 C -0.07 -0.89 10.03 -39.51 -0.40 -1.29 16 18 C -0.17 -1.83 10.03 -39.62 -0.40 -2.22 16 19 C -0.07 -0.74 9.79 -39.17 -0.38 -1.12 16 20 C -0.08 -1.12 5.88 -104.92 -0.62 -1.74 16 21 C 0.05 0.63 10.75 -14.68 -0.16 0.47 16 22 N -0.18 -2.76 9.71 32.15 0.31 -2.45 16 23 N -0.79 -8.94 10.43 60.35 0.63 -8.31 16 24 C 0.12 2.62 6.60 -2.52 -0.02 2.60 16 25 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.05 1.29 7.52 -51.93 -0.39 0.90 16 27 H 0.05 1.35 7.37 -51.93 -0.38 0.97 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.14 2.10 5.30 -52.49 -0.28 1.83 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.11 1.04 8.02 -52.49 -0.42 0.62 16 35 H 0.42 4.26 8.96 -182.60 -1.64 2.63 16 36 H 0.37 3.14 8.79 -182.59 -1.60 1.54 16 37 H 0.04 0.88 7.25 -51.92 -0.38 0.50 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 316.21 15.07 4.77 4.77 Total: -1.00 -32.30 316.21 -10.06 -42.36 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.52 Total: 3.03 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -3.07 Total: -8.55 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.94 Total: -53.73 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.15 Total: -5.07 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.30 -10.06 -42.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229293951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.633 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds