Wall clock time and date at job start Mon Mar 30 2020 01:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 120.00066 * 2 1 4 4 H 1.48496 * 109.47493 * 90.00168 * 3 2 1 5 5 H 1.48503 * 109.47334 * 210.00454 * 3 2 1 6 6 H 1.48504 * 109.47236 * 330.00213 * 3 2 1 7 7 C 1.38818 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99687 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00294 * 359.97438 * 7 2 1 10 10 C 1.47025 * 125.64834 * 359.69488 * 9 7 2 11 11 C 1.54330 * 107.26495 * 178.84902 * 10 9 7 12 12 C 1.55156 * 103.02178 * 338.13937 * 11 10 9 13 13 H 1.09004 * 111.00259 * 277.23187 * 12 11 10 14 14 O 1.42897 * 111.03752 * 153.39755 * 12 11 10 15 15 C 1.35848 * 117.00190 * 162.33532 * 14 12 11 16 16 C 1.38491 * 120.13062 * 5.31132 * 15 14 12 17 17 C 1.38241 * 120.09538 * 179.97438 * 16 15 14 18 18 C 1.38423 * 120.37140 * 0.02562 * 17 16 15 19 19 C 1.37934 * 120.27176 * 0.03879 * 18 17 16 20 20 C 1.39646 * 119.89262 * 359.68350 * 19 18 17 21 21 C 1.47439 * 120.17994 * 180.31829 * 20 19 18 22 22 N 1.29757 * 119.99563 * 180.23099 * 21 20 19 23 23 N 1.40104 * 119.99802 * 180.02562 * 22 21 20 24 24 C 1.47416 * 125.65069 * 180.02562 * 9 7 2 25 25 H 0.96992 * 119.99877 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.87837 * 298.39212 * 10 9 7 27 27 H 1.09000 * 109.88362 * 59.55592 * 10 9 7 28 28 H 1.09003 * 110.85109 * 219.66842 * 11 10 9 29 29 H 1.09004 * 110.66578 * 96.52214 * 11 10 9 30 30 H 1.08001 * 119.95439 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.81353 * 180.02562 * 17 16 15 32 32 H 1.08002 * 119.86845 * 180.02562 * 18 17 16 33 33 H 1.07996 * 120.05222 * 179.97438 * 19 18 17 34 34 H 1.07993 * 119.99993 * 0.22810 * 21 20 19 35 35 H 0.96997 * 119.99729 * 179.97438 * 23 22 21 36 36 H 0.97004 * 119.99703 * 0.02562 * 23 22 21 37 37 H 1.09008 * 110.36360 * 322.93129 * 24 9 7 38 38 H 1.08996 * 110.37276 * 85.14097 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5478 1.4402 -0.7001 6 1 1.4477 2.6527 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0064 11 6 -0.4484 -4.0441 -0.0261 12 6 0.8514 -4.6560 -0.6121 13 1 0.8553 -4.5959 -1.7005 14 8 1.0251 -6.0056 -0.1759 15 6 1.8936 -6.7752 -0.8822 16 6 2.6464 -6.2169 -1.9019 17 6 3.5303 -7.0006 -2.6199 18 6 3.6697 -8.3463 -2.3270 19 6 2.9265 -8.9184 -1.3155 20 6 2.0346 -8.1359 -0.5792 21 6 1.2422 -8.7393 0.5079 22 7 0.4111 -8.0098 1.1868 23 7 -0.3414 -8.5830 2.2203 24 6 1.9334 -3.7311 -0.0005 25 1 -0.4849 0.8400 0.0004 26 1 -0.5498 -2.0868 0.9115 27 1 -0.5619 -2.0499 -0.8738 28 1 -1.2991 -4.2514 -0.6753 29 1 -0.6323 -4.4207 0.9802 30 1 2.5428 -5.1678 -2.1364 31 1 4.1155 -6.5605 -3.4138 32 1 4.3630 -8.9510 -2.8928 33 1 3.0378 -9.9687 -1.0903 34 1 1.3535 -9.7883 0.7391 35 1 -0.9624 -8.0376 2.7280 36 1 -0.2409 -9.5251 2.4284 37 1 2.8327 -3.7405 -0.6165 38 1 2.1687 -4.0412 1.0176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229293951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:34 Heat of formation + Delta-G solvation = 45.377304 kcal Electronic energy + Delta-G solvation = -21023.321061 eV Core-core repulsion = 17867.274657 eV Total energy + Delta-G solvation = -3156.046404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.21276 -39.22662 -37.51358 -37.30115 -34.30073 -32.99838 -31.42491 -30.72284 -29.58220 -28.99844 -26.52369 -24.38911 -23.69727 -22.17782 -21.56654 -21.22311 -19.04376 -18.96338 -17.78000 -17.65531 -16.81989 -16.49305 -16.25824 -16.13765 -15.61233 -15.24154 -15.03521 -14.34258 -14.19470 -14.03111 -13.92595 -13.68809 -13.31525 -12.95967 -12.83440 -12.64650 -12.40490 -12.15169 -12.04544 -12.00465 -11.84918 -11.51155 -11.42005 -10.78925 -10.73948 -10.28087 -9.27318 -8.97507 -8.48110 -7.88140 -5.25796 0.10936 0.61682 1.45777 1.48219 1.57015 1.77636 2.23692 2.49403 2.53603 3.04914 3.30673 3.64855 3.69189 3.82783 3.95849 4.03194 4.11158 4.26894 4.40230 4.50960 4.55978 4.60517 4.74968 4.81419 4.85576 4.95447 5.05050 5.15688 5.22319 5.39906 5.55411 5.57370 5.66135 5.68368 5.70793 6.00626 6.13688 6.62417 6.86458 7.05081 7.63553 7.69928 8.34815 9.22459 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.004634 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.628450 B = 6040.894362 C = 6972.951291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.062 4.062 3 Si 0.983 3.017 4 H -0.286 1.286 5 H -0.267 1.267 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.083 0.917 9 N -0.622 5.622 10 C 0.189 3.811 11 C -0.117 4.117 12 C 0.083 3.917 13 H 0.082 0.918 14 O -0.280 6.280 15 C 0.127 3.873 16 C -0.230 4.230 17 C -0.077 4.077 18 C -0.158 4.158 19 C -0.057 4.057 20 C -0.094 4.094 21 C 0.048 3.952 22 N -0.232 5.232 23 N -0.782 5.782 24 C 0.122 3.878 25 H 0.249 0.751 26 H 0.014 0.986 27 H 0.023 0.977 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.142 0.858 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.140 0.860 35 H 0.420 0.580 36 H 0.382 0.618 37 H 0.048 0.952 38 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 -21.477 -2.866 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.255 4.255 3 Si 0.810 3.190 4 H -0.213 1.213 5 H -0.192 1.192 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.100 0.900 9 N -0.350 5.350 10 C 0.064 3.936 11 C -0.155 4.155 12 C 0.026 3.974 13 H 0.100 0.900 14 O -0.191 6.191 15 C 0.079 3.921 16 C -0.249 4.249 17 C -0.096 4.096 18 C -0.176 4.176 19 C -0.077 4.077 20 C -0.097 4.097 21 C -0.163 4.163 22 N -0.042 5.042 23 N -0.436 5.436 24 C -0.004 4.004 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.042 0.958 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.136 0.864 31 H 0.160 0.840 32 H 0.176 0.824 33 H 0.184 0.816 34 H 0.157 0.843 35 H 0.255 0.745 36 H 0.214 0.786 37 H 0.066 0.934 38 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 3.603 -20.387 -2.539 20.858 hybrid contribution 0.133 0.601 0.483 0.782 sum 3.735 -19.787 -2.056 20.241 Atomic orbital electron populations 1.70169 1.06349 1.25561 1.57837 1.25691 0.96669 1.01070 1.02074 0.85022 0.77698 0.78735 0.77513 1.21296 1.19192 1.21724 1.19462 0.91041 0.83428 1.43788 0.89958 1.44620 1.02442 1.00672 1.87242 1.20923 0.83804 0.90351 0.98547 1.22746 0.95986 0.95011 1.01747 1.23400 0.96415 0.79363 0.98271 0.90037 1.86336 1.58231 1.21876 1.52622 1.19593 0.90087 0.91138 0.91302 1.21435 1.02123 1.01232 1.00100 1.21347 0.95722 0.94470 0.98054 1.21309 1.01951 0.94816 0.99542 1.21375 0.92555 1.00432 0.93330 1.18107 1.02166 0.89841 0.99543 1.23978 0.97599 0.97790 0.96924 1.74497 1.03250 1.27931 0.98566 1.45701 1.48504 1.11941 1.37460 1.22013 0.95433 0.85424 0.97538 0.94148 0.96826 0.95830 0.89342 0.90926 0.86415 0.83983 0.82409 0.81642 0.84343 0.74540 0.78613 0.93414 0.96535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.01 10.31 21.65 0.22 -57.78 16 2 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 3 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 7 C -0.25 -14.40 10.28 84.04 0.86 -13.54 16 8 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 9 N -0.62 -33.71 3.39 -691.94 -2.35 -36.06 16 10 C 0.19 9.79 5.38 86.73 0.47 10.25 16 11 C -0.12 -4.78 6.68 31.78 0.21 -4.56 16 12 C 0.08 3.26 2.82 31.99 0.09 3.35 16 13 H 0.08 3.09 6.62 -2.39 -0.02 3.07 16 14 O -0.28 -10.26 7.83 -91.85 -0.72 -10.98 16 15 C 0.13 4.03 6.65 22.79 0.15 4.19 16 16 C -0.23 -6.72 8.72 22.33 0.19 -6.53 16 17 C -0.08 -1.69 10.03 22.31 0.22 -1.47 16 18 C -0.16 -2.73 10.03 22.24 0.22 -2.51 16 19 C -0.06 -1.02 9.79 22.54 0.22 -0.80 16 20 C -0.09 -2.41 5.88 -20.06 -0.12 -2.53 16 21 C 0.05 1.16 10.75 87.43 0.94 2.10 16 22 N -0.23 -6.75 9.71 -52.20 -0.51 -7.26 16 23 N -0.78 -16.89 10.43 37.02 0.39 -16.50 16 24 C 0.12 5.51 6.60 86.86 0.57 6.08 16 25 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 26 H 0.01 0.78 7.52 -2.38 -0.02 0.76 16 27 H 0.02 1.33 7.37 -2.39 -0.02 1.31 16 28 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 30 H 0.12 3.75 5.30 -2.91 -0.02 3.73 16 31 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 34 H 0.14 2.25 8.02 -2.91 -0.02 2.23 16 35 H 0.42 8.36 8.96 -213.32 -1.91 6.44 16 36 H 0.38 5.87 8.79 -213.31 -1.87 3.99 16 37 H 0.05 2.07 7.25 -2.38 -0.02 2.05 16 38 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -72.30 316.21 0.87 -71.43 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -2.69 Total: 17.87 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 4.51 Total: -9.08 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -2.25 Total: -117.60 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.72 Total: -10.98 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -72.30 0.87 -71.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229293951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.808 kcal (2) G-P(sol) polarization free energy of solvation -72.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds