Wall clock time and date at job start Mon Mar 30 2020 01:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99933 * 2 1 4 4 H 1.48490 * 109.47334 * 270.00192 * 3 2 1 5 5 H 1.48507 * 109.46775 * 30.00595 * 3 2 1 6 6 H 1.48508 * 109.46827 * 150.00247 * 3 2 1 7 7 C 1.37877 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99942 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00235 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47545 * 180.02562 * 9 7 2 11 11 C 1.47956 * 111.00541 * 169.99945 * 10 9 7 12 12 C 1.53928 * 86.18460 * 222.41909 * 11 10 9 13 13 O 1.42900 * 113.73417 * 138.07869 * 12 11 10 14 14 C 1.35845 * 117.00140 * 156.67395 * 13 12 11 15 15 C 1.38501 * 120.13127 * 5.78754 * 14 13 12 16 16 C 1.38247 * 120.09081 * 179.75377 * 15 14 13 17 17 C 1.38420 * 120.37343 * 0.55017 * 16 15 14 18 18 C 1.37938 * 120.26787 * 359.70342 * 17 16 15 19 19 C 1.39631 * 119.89856 * 0.02562 * 18 17 16 20 20 C 1.47439 * 120.18120 * 180.02562 * 19 18 17 21 21 N 1.29755 * 119.99792 * 179.97438 * 20 19 18 22 22 N 1.40098 * 119.99708 * 180.02562 * 21 20 19 23 23 C 1.47961 * 110.99642 * 70.63997 * 10 9 7 24 24 H 0.97002 * 119.99873 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46906 * 60.00331 * 9 7 2 26 26 H 1.08995 * 109.47673 * 300.00422 * 9 7 2 27 27 H 1.09006 * 113.75637 * 108.09617 * 11 10 9 28 28 H 1.09007 * 113.75870 * 336.74177 * 11 10 9 29 29 H 1.09001 * 113.73594 * 269.25652 * 12 11 10 30 30 H 1.07992 * 119.95334 * 0.02562 * 15 14 13 31 31 H 1.07999 * 119.80734 * 180.28011 * 16 15 14 32 32 H 1.08001 * 119.86363 * 179.72746 * 17 16 15 33 33 H 1.08000 * 120.04468 * 180.02562 * 18 17 16 34 34 H 1.08001 * 119.99956 * 359.97438 * 20 19 18 35 35 H 0.97007 * 119.99912 * 180.02562 * 22 21 20 36 36 H 0.96993 * 120.00465 * 0.02562 * 22 21 20 37 37 H 1.08993 * 113.75874 * 23.26956 * 23 10 9 38 38 H 1.09004 * 113.75946 * 251.90192 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 4.0013 -2.5790 -0.0022 11 6 5.4605 -2.6253 -0.2427 12 6 5.1650 -3.8128 -1.1765 13 8 5.9111 -3.7858 -2.3950 14 6 6.0953 -4.9715 -3.0318 15 6 5.4716 -6.1162 -2.5639 16 6 5.6556 -7.3215 -3.2156 17 6 6.4715 -7.3965 -4.3313 18 6 7.1042 -6.2669 -4.8071 19 6 6.9218 -5.0426 -4.1610 20 6 7.5946 -3.8312 -4.6646 21 7 7.4222 -2.6952 -4.0617 22 7 8.0611 -1.5440 -4.5406 23 6 3.7459 -3.2306 -1.3058 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8746 -0.6799 -0.8910 27 1 6.0425 -2.8940 0.6389 28 1 5.8487 -1.7469 -0.7585 29 1 5.1998 -4.7818 -0.6785 30 1 4.8371 -6.0663 -1.6914 31 1 5.1634 -8.2103 -2.8495 32 1 6.6129 -8.3432 -4.8314 33 1 7.7396 -6.3294 -5.6781 34 1 8.2309 -3.8893 -5.5353 35 1 7.9325 -0.6948 -4.0896 36 1 8.6320 -1.5960 -5.3230 37 1 3.6325 -2.5294 -2.1325 38 1 2.9579 -3.9831 -1.2737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229297243.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:28 Heat of formation + Delta-G solvation = 80.669037 kcal Electronic energy + Delta-G solvation = -20714.045902 eV Core-core repulsion = 17559.529862 eV Total energy + Delta-G solvation = -3154.516040 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.35188 -38.86088 -36.56938 -36.42783 -32.78172 -32.17532 -30.23313 -29.62381 -28.58408 -25.82384 -25.33751 -23.52430 -22.80711 -20.85295 -20.59214 -19.25960 -18.09645 -16.94118 -16.87621 -16.77126 -15.57771 -15.38581 -15.20574 -14.87278 -14.34883 -14.13714 -13.71616 -13.35031 -13.32457 -12.68054 -12.59613 -12.20768 -12.07437 -11.93418 -11.85672 -11.59959 -11.09937 -10.82428 -10.72328 -10.14675 -9.94286 -9.87735 -9.76481 -9.44815 -9.28607 -8.61666 -8.39362 -8.03161 -7.58716 -6.07206 -4.05462 0.95381 1.47156 2.62519 3.24847 3.27566 3.34801 3.37348 3.43751 3.89281 4.40593 4.62527 4.63483 4.81500 4.90225 4.99972 5.07316 5.22127 5.25342 5.35098 5.52131 5.54357 5.78740 5.89853 5.96925 6.02297 6.06830 6.29197 6.34132 6.40115 6.46607 6.47280 6.52183 6.78077 6.82642 7.26100 7.58384 7.68729 7.72524 7.78228 8.41299 8.57666 9.00187 9.53908 11.05965 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.004489 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.095755 B = 6235.782157 C = 7081.219233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.513 4.513 8 H 0.079 0.921 9 C 0.132 3.868 10 N -0.464 5.464 11 C 0.007 3.993 12 C 0.038 3.962 13 O -0.270 6.270 14 C 0.162 3.838 15 C -0.213 4.213 16 C -0.073 4.073 17 C -0.167 4.167 18 C -0.066 4.066 19 C -0.077 4.077 20 C 0.046 3.954 21 N -0.184 5.184 22 N -0.786 5.786 23 C 0.012 3.988 24 H 0.264 0.736 25 H 0.033 0.967 26 H -0.006 1.006 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.107 0.893 35 H 0.418 0.582 36 H 0.369 0.631 37 H 0.078 0.922 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.373 -11.631 -10.162 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.551 4.551 8 H 0.097 0.903 9 C 0.005 3.995 10 N -0.188 5.188 11 C -0.122 4.122 12 C -0.019 4.019 13 O -0.180 6.180 14 C 0.113 3.887 15 C -0.232 4.232 16 C -0.092 4.092 17 C -0.186 4.186 18 C -0.086 4.086 19 C -0.080 4.080 20 C -0.166 4.166 21 N 0.005 4.995 22 N -0.438 5.438 23 C -0.117 4.117 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.012 0.988 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.124 0.876 35 H 0.252 0.748 36 H 0.199 0.801 37 H 0.096 0.904 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.538 -11.022 -8.818 21.743 hybrid contribution 1.113 1.423 -1.479 2.335 sum 17.651 -9.599 -10.297 22.577 Atomic orbital electron populations 1.69892 1.06140 1.26899 1.50837 1.24899 0.94747 0.98885 0.94662 0.86850 0.80395 0.83953 0.78524 1.20285 1.21056 1.19112 1.20952 0.88511 0.94860 1.50763 0.90265 1.20666 0.97684 0.85409 0.95729 1.68490 1.02990 1.18934 1.28358 1.24162 0.94231 0.96699 0.97117 1.24931 0.92748 1.00194 0.84017 1.86462 1.69029 1.26611 1.35874 1.19212 0.92447 0.85539 0.91547 1.21332 1.05252 0.92875 1.03750 1.21021 0.96527 0.97016 0.94625 1.20864 1.00714 0.98348 0.98633 1.20927 0.98449 0.90714 0.98561 1.17722 1.01117 0.92437 0.96736 1.23678 1.02424 0.90939 0.99518 1.74537 1.10410 0.94357 1.20165 1.45819 1.55649 1.07311 1.35019 1.24214 0.94848 0.99024 0.93649 0.92610 0.94941 0.98833 0.89445 0.90782 0.88047 0.84826 0.85899 0.85947 0.85437 0.87577 0.74775 0.80135 0.90360 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.51 -14.88 9.40 -34.44 -0.32 -15.20 16 8 H 0.08 2.50 8.04 -52.49 -0.42 2.08 16 9 C 0.13 3.29 3.65 -4.98 -0.02 3.27 16 10 N -0.46 -9.94 6.25 -239.98 -1.50 -11.44 16 11 C 0.01 0.12 7.81 -2.77 -0.02 0.10 16 12 C 0.04 0.62 3.88 -25.80 -0.10 0.52 16 13 O -0.27 -4.43 8.03 -19.25 -0.15 -4.58 16 14 C 0.16 2.34 6.69 -38.78 -0.26 2.08 16 15 C -0.21 -2.70 9.01 -39.48 -0.36 -3.05 16 16 C -0.07 -0.76 10.03 -39.51 -0.40 -1.15 16 17 C -0.17 -1.58 10.03 -39.62 -0.40 -1.98 16 18 C -0.07 -0.66 9.79 -39.17 -0.38 -1.04 16 19 C -0.08 -0.99 5.88 -104.93 -0.62 -1.60 16 20 C 0.05 0.57 10.75 -14.68 -0.16 0.41 16 21 N -0.18 -2.66 9.71 32.15 0.31 -2.35 16 22 N -0.79 -8.77 10.43 60.35 0.63 -8.14 16 23 C 0.01 0.23 7.29 -2.76 -0.02 0.21 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.03 0.82 7.20 -51.93 -0.37 0.44 16 26 H -0.01 -0.15 7.11 -51.93 -0.37 -0.52 16 27 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.07 1.34 7.79 -51.93 -0.40 0.94 16 29 H 0.10 1.45 5.96 -51.93 -0.31 1.15 16 30 H 0.13 1.62 5.91 -52.49 -0.31 1.31 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.11 0.99 8.02 -52.49 -0.42 0.57 16 35 H 0.42 4.29 8.96 -182.59 -1.64 2.66 16 36 H 0.37 3.09 8.79 -182.61 -1.60 1.48 16 37 H 0.08 1.66 7.78 -51.93 -0.40 1.26 16 38 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 320.61 15.07 4.83 4.83 Total: -1.00 -33.38 320.61 -10.46 -43.84 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.54 Total: 3.26 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -3.15 Total: -15.48 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.21 Total: -49.01 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.15 Total: -4.58 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.38 -10.46 -43.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229297243.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.514 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds