Wall clock time and date at job start Mon Mar 30 2020 01:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99933 * 2 1 4 4 H 1.48490 * 109.47334 * 270.00192 * 3 2 1 5 5 H 1.48507 * 109.46775 * 30.00595 * 3 2 1 6 6 H 1.48508 * 109.46827 * 150.00247 * 3 2 1 7 7 C 1.37877 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99942 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00235 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47545 * 180.02562 * 9 7 2 11 11 C 1.47956 * 111.00541 * 169.99945 * 10 9 7 12 12 C 1.53928 * 86.18460 * 222.41909 * 11 10 9 13 13 O 1.42900 * 113.73417 * 138.07869 * 12 11 10 14 14 C 1.35845 * 117.00140 * 156.67395 * 13 12 11 15 15 C 1.38501 * 120.13127 * 5.78754 * 14 13 12 16 16 C 1.38247 * 120.09081 * 179.75377 * 15 14 13 17 17 C 1.38420 * 120.37343 * 0.55017 * 16 15 14 18 18 C 1.37938 * 120.26787 * 359.70342 * 17 16 15 19 19 C 1.39631 * 119.89856 * 0.02562 * 18 17 16 20 20 C 1.47439 * 120.18120 * 180.02562 * 19 18 17 21 21 N 1.29755 * 119.99792 * 179.97438 * 20 19 18 22 22 N 1.40098 * 119.99708 * 180.02562 * 21 20 19 23 23 C 1.47961 * 110.99642 * 70.63997 * 10 9 7 24 24 H 0.97002 * 119.99873 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46906 * 60.00331 * 9 7 2 26 26 H 1.08995 * 109.47673 * 300.00422 * 9 7 2 27 27 H 1.09006 * 113.75637 * 108.09617 * 11 10 9 28 28 H 1.09007 * 113.75870 * 336.74177 * 11 10 9 29 29 H 1.09001 * 113.73594 * 269.25652 * 12 11 10 30 30 H 1.07992 * 119.95334 * 0.02562 * 15 14 13 31 31 H 1.07999 * 119.80734 * 180.28011 * 16 15 14 32 32 H 1.08001 * 119.86363 * 179.72746 * 17 16 15 33 33 H 1.08000 * 120.04468 * 180.02562 * 18 17 16 34 34 H 1.08001 * 119.99956 * 359.97438 * 20 19 18 35 35 H 0.97007 * 119.99912 * 180.02562 * 22 21 20 36 36 H 0.96993 * 120.00465 * 0.02562 * 22 21 20 37 37 H 1.08993 * 113.75874 * 23.26956 * 23 10 9 38 38 H 1.09004 * 113.75946 * 251.90192 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 4.0013 -2.5790 -0.0022 11 6 5.4605 -2.6253 -0.2427 12 6 5.1650 -3.8128 -1.1765 13 8 5.9111 -3.7858 -2.3950 14 6 6.0953 -4.9715 -3.0318 15 6 5.4716 -6.1162 -2.5639 16 6 5.6556 -7.3215 -3.2156 17 6 6.4715 -7.3965 -4.3313 18 6 7.1042 -6.2669 -4.8071 19 6 6.9218 -5.0426 -4.1610 20 6 7.5946 -3.8312 -4.6646 21 7 7.4222 -2.6952 -4.0617 22 7 8.0611 -1.5440 -4.5406 23 6 3.7459 -3.2306 -1.3058 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8746 -0.6799 -0.8910 27 1 6.0425 -2.8940 0.6389 28 1 5.8487 -1.7469 -0.7585 29 1 5.1998 -4.7818 -0.6785 30 1 4.8371 -6.0663 -1.6914 31 1 5.1634 -8.2103 -2.8495 32 1 6.6129 -8.3432 -4.8314 33 1 7.7396 -6.3294 -5.6781 34 1 8.2309 -3.8893 -5.5353 35 1 7.9325 -0.6948 -4.0896 36 1 8.6320 -1.5960 -5.3230 37 1 3.6325 -2.5294 -2.1325 38 1 2.9579 -3.9831 -1.2737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229297243.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:27 Heat of formation + Delta-G solvation = 55.319311 kcal Electronic energy + Delta-G solvation = -20715.145148 eV Core-core repulsion = 17559.529862 eV Total energy + Delta-G solvation = -3155.615287 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.55642 -40.08372 -37.72648 -37.33066 -34.95760 -33.06853 -31.72674 -30.88129 -29.51754 -27.50256 -26.93855 -24.41120 -24.14801 -22.44954 -21.52556 -20.64793 -19.18581 -19.02415 -17.81752 -17.78094 -16.95234 -16.57353 -16.31429 -16.10604 -16.06917 -15.17880 -15.09823 -14.73777 -14.53938 -14.19672 -13.91308 -13.73546 -13.67355 -13.30355 -12.98518 -12.69888 -12.64063 -12.39639 -11.93453 -11.84022 -11.51361 -11.48696 -11.30735 -10.86290 -10.82991 -10.30200 -9.76508 -9.28755 -8.51207 -8.34317 -6.39170 0.09494 0.59582 1.30610 1.32247 1.43624 1.74944 2.23840 2.29763 2.48678 2.98226 3.02002 3.13599 3.43886 3.75884 3.88325 4.03974 4.14658 4.25832 4.42322 4.44998 4.51034 4.60634 4.64438 4.73094 4.75282 4.78085 4.80871 4.98506 5.13871 5.19699 5.32898 5.52788 5.64769 5.65437 5.69360 5.90060 5.99036 6.42077 6.60752 6.65834 6.81245 7.24673 7.59426 8.82401 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.004489 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.095755 B = 6235.782157 C = 7081.219233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.249 1.249 7 C -0.524 4.524 8 H 0.036 0.964 9 C 0.143 3.857 10 N -0.481 5.481 11 C 0.010 3.990 12 C 0.064 3.936 13 O -0.285 6.285 14 C 0.126 3.874 15 C -0.228 4.228 16 C -0.075 4.075 17 C -0.160 4.160 18 C -0.059 4.059 19 C -0.096 4.096 20 C 0.048 3.952 21 N -0.233 5.233 22 N -0.783 5.783 23 C 0.005 3.995 24 H 0.269 0.731 25 H 0.034 0.966 26 H -0.007 1.007 27 H 0.113 0.887 28 H 0.069 0.931 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.147 0.853 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.137 0.863 35 H 0.420 0.580 36 H 0.382 0.618 37 H 0.054 0.946 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.983 -12.636 -11.301 26.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.172 1.172 7 C -0.562 4.562 8 H 0.054 0.946 9 C 0.016 3.984 10 N -0.205 5.205 11 C -0.118 4.118 12 C 0.007 3.993 13 O -0.195 6.195 14 C 0.077 3.923 15 C -0.247 4.247 16 C -0.094 4.094 17 C -0.178 4.178 18 C -0.079 4.079 19 C -0.099 4.099 20 C -0.163 4.163 21 N -0.043 5.043 22 N -0.437 5.437 23 C -0.124 4.124 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.011 0.989 27 H 0.131 0.869 28 H 0.087 0.913 29 H 0.140 0.860 30 H 0.148 0.852 31 H 0.164 0.836 32 H 0.174 0.826 33 H 0.179 0.821 34 H 0.154 0.846 35 H 0.254 0.746 36 H 0.214 0.786 37 H 0.072 0.928 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 19.173 -12.052 -9.970 24.744 hybrid contribution 0.285 1.525 -1.228 1.979 sum 19.458 -10.527 -11.198 24.796 Atomic orbital electron populations 1.70041 1.08100 1.28287 1.52088 1.25857 0.95651 1.03177 0.94012 0.85705 0.79548 0.78541 0.79135 1.19386 1.20156 1.17236 1.21171 0.90854 0.93446 1.50726 0.94577 1.20422 0.94841 0.87676 0.95507 1.68388 1.05796 1.16780 1.29532 1.24211 0.91834 0.97237 0.98563 1.24557 0.89988 1.00426 0.84367 1.86430 1.69122 1.28211 1.35775 1.19589 0.94485 0.85321 0.92858 1.21439 1.05541 0.93443 1.04228 1.21381 0.96432 0.96901 0.94686 1.21324 0.99071 0.99591 0.97782 1.21360 0.98064 0.89568 0.98912 1.18111 1.01275 0.93801 0.96682 1.24013 1.02038 0.90331 0.99941 1.74468 1.12161 0.95636 1.22061 1.45708 1.55750 1.06682 1.35563 1.24172 0.97521 0.98611 0.92072 0.92240 0.94761 0.98884 0.86865 0.91267 0.85966 0.85187 0.83558 0.82584 0.82052 0.84625 0.74626 0.78609 0.92771 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.27 13.96 21.45 0.30 -59.97 16 2 C 0.01 0.65 5.47 84.66 0.46 1.11 16 3 Si 0.95 45.19 27.47 68.60 1.88 47.07 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 7 C -0.52 -31.51 9.40 25.60 0.24 -31.27 16 8 H 0.04 2.41 8.04 -2.91 -0.02 2.39 16 9 C 0.14 7.22 3.65 85.56 0.31 7.54 16 10 N -0.48 -20.95 6.25 -916.36 -5.73 -26.68 16 11 C 0.01 0.35 7.81 86.40 0.67 1.02 16 12 C 0.06 2.08 3.88 31.24 0.12 2.20 16 13 O -0.28 -9.37 8.03 -91.81 -0.74 -10.11 16 14 C 0.13 3.55 6.69 22.79 0.15 3.71 16 15 C -0.23 -5.53 9.01 22.33 0.20 -5.33 16 16 C -0.07 -1.37 10.03 22.32 0.22 -1.14 16 17 C -0.16 -2.40 10.03 22.24 0.22 -2.18 16 18 C -0.06 -0.97 9.79 22.54 0.22 -0.75 16 19 C -0.10 -2.28 5.88 -20.06 -0.12 -2.40 16 20 C 0.05 1.11 10.75 87.43 0.94 2.05 16 21 N -0.23 -6.59 9.71 -52.20 -0.51 -7.10 16 22 N -0.78 -16.89 10.43 37.02 0.39 -16.50 16 23 C 0.01 0.22 7.29 86.41 0.63 0.85 16 24 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 25 H 0.03 1.71 7.20 -2.39 -0.02 1.69 16 26 H -0.01 -0.33 7.11 -2.39 -0.02 -0.35 16 27 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 28 H 0.07 2.49 7.79 -2.38 -0.02 2.47 16 29 H 0.12 3.43 5.96 -2.39 -0.01 3.42 16 30 H 0.13 3.11 5.91 -2.91 -0.02 3.09 16 31 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 33 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.14 2.16 8.02 -2.91 -0.02 2.14 16 35 H 0.42 8.47 8.96 -213.31 -1.91 6.55 16 36 H 0.38 5.91 8.79 -213.33 -1.87 4.03 16 37 H 0.05 2.43 7.78 -2.39 -0.02 2.42 16 38 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -74.97 320.61 -2.87 -77.84 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -2.75 Total: 20.03 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 4.28 Total: -24.58 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -5.55 Total: -110.25 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.74 Total: -10.11 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -74.97 -2.87 -77.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229297243.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.156 kcal (2) G-P(sol) polarization free energy of solvation -74.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds