Wall clock time and date at job start Mon Mar 30 2020 02:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00026 * 2 1 4 4 H 1.48491 * 109.47084 * 89.99984 * 3 2 1 5 5 H 1.48506 * 109.47012 * 209.99965 * 3 2 1 6 6 H 1.48501 * 109.46798 * 329.99612 * 3 2 1 7 7 C 1.37876 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99929 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00319 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46867 * 180.02562 * 9 7 2 11 11 C 1.47477 * 111.00034 * 265.96662 * 10 9 7 12 12 C 1.53502 * 87.93626 * 221.30013 * 11 10 9 13 13 O 1.42900 * 114.17247 * 139.67118 * 12 11 10 14 14 C 1.35922 * 116.99942 * 108.35864 * 13 12 11 15 15 C 1.39098 * 120.85663 * 173.92664 * 14 13 12 16 16 N 1.32282 * 119.03465 * 179.72049 * 15 14 13 17 17 C 1.31785 * 120.87677 * 0.56339 * 16 15 14 18 18 C 1.50700 * 119.05695 * 179.68553 * 17 16 15 19 19 C 1.52998 * 117.49715 * 8.64438 * 18 17 16 20 20 C 1.52999 * 60.00089 * 252.50920 * 19 18 17 21 21 N 1.31789 * 121.88966 * 359.70747 * 17 16 15 22 22 C 1.32291 * 120.87369 * 0.02562 * 21 17 16 23 23 C 1.47478 * 110.99588 * 169.99954 * 10 9 7 24 24 H 0.97001 * 120.00236 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47020 * 299.99718 * 9 7 2 26 26 H 1.08995 * 109.46855 * 60.00428 * 9 7 2 27 27 H 1.09002 * 113.47921 * 336.07079 * 11 10 9 28 28 H 1.09003 * 113.47368 * 106.53052 * 11 10 9 29 29 H 1.09001 * 114.17143 * 272.38276 * 12 11 10 30 30 H 1.08000 * 120.48049 * 359.97438 * 15 14 13 31 31 H 1.09004 * 115.55129 * 154.35472 * 18 17 16 32 32 H 1.09001 * 117.50272 * 0.02562 * 19 18 17 33 33 H 1.09003 * 117.49759 * 145.02036 * 19 18 17 34 34 H 1.09001 * 117.50157 * 252.50845 * 20 19 18 35 35 H 1.09003 * 117.49671 * 107.49329 * 20 19 18 36 36 H 1.07999 * 120.47910 * 179.97438 * 22 21 17 37 37 H 1.09004 * 113.47809 * 253.46932 * 23 10 9 38 38 H 1.09000 * 113.47822 * 23.93362 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6526 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0012 -2.5790 0.0010 11 6 4.2681 -3.0453 1.3744 12 6 5.5417 -3.7152 0.8401 13 8 6.6730 -3.5951 1.7049 14 6 7.0769 -4.7199 2.3522 15 6 8.2408 -4.7257 3.1139 16 7 8.5973 -5.8388 3.7333 17 6 7.8721 -6.9341 3.6267 18 6 8.3203 -8.1813 4.3441 19 6 9.4886 -8.0518 5.3234 20 6 9.6918 -8.7524 3.9785 21 7 6.7666 -6.9701 2.9103 22 6 6.3405 -5.8966 2.2651 23 6 5.4558 -2.6252 -0.2375 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 -0.8888 26 1 3.8745 -0.6800 0.8911 27 1 4.4654 -2.2359 2.0773 28 1 3.5270 -3.7541 1.7440 29 1 5.3898 -4.7271 0.4644 30 1 8.8425 -3.8331 3.2017 31 1 7.5303 -8.8898 4.5934 32 1 9.9329 -7.0644 5.4492 33 1 9.4674 -8.6750 6.2174 34 1 9.8043 -9.8365 3.9877 35 1 10.2701 -8.2260 3.2191 36 1 5.4338 -5.9334 1.6795 37 1 5.7215 -2.9780 -1.2341 38 1 5.9701 -1.7036 0.0350 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230751005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:40 Heat of formation + Delta-G solvation = 87.689364 kcal Electronic energy + Delta-G solvation = -20126.556562 eV Core-core repulsion = 16972.344946 eV Total energy + Delta-G solvation = -3154.211616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55328 -40.07964 -37.94234 -36.83727 -33.95367 -32.89499 -30.97126 -29.82077 -26.31531 -25.72078 -24.80409 -24.68248 -22.61974 -21.90282 -21.05757 -19.88568 -18.55075 -17.95162 -17.10271 -16.84897 -15.90146 -15.46088 -15.27994 -14.93262 -14.59074 -14.31681 -14.23830 -13.77608 -13.22066 -12.81860 -12.56606 -12.45930 -12.24711 -11.91478 -11.81559 -11.50361 -11.29490 -11.06683 -10.97924 -10.75093 -10.74548 -10.32035 -10.16579 -9.88611 -9.48045 -9.36387 -8.66952 -8.63675 -8.28284 -6.13135 -4.11848 0.72594 0.80392 2.82902 3.21388 3.24607 3.29722 3.29819 3.60537 3.76658 3.98919 4.11749 4.33553 4.34798 4.51356 4.59994 4.69485 4.74495 4.76347 4.89386 5.07611 5.16731 5.36410 5.39527 5.52986 5.54513 5.66543 5.78662 5.81819 5.91803 5.93452 6.00233 6.06820 6.20980 6.55951 6.66146 7.08487 7.13463 7.50566 7.65402 7.88223 8.51346 8.96259 9.46958 10.99973 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.047381 B = 0.002967 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.813467 B = 9434.608257 C = 9595.928630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.267 1.267 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.447 5.447 11 C -0.005 4.005 12 C 0.037 3.963 13 O -0.288 6.288 14 C 0.033 3.967 15 C 0.122 3.878 16 N -0.481 5.481 17 C 0.300 3.700 18 C -0.095 4.095 19 C -0.156 4.156 20 C -0.159 4.159 21 N -0.478 5.478 22 C 0.071 3.929 23 C 0.002 3.998 24 H 0.265 0.735 25 H 0.031 0.969 26 H 0.000 1.000 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.176 0.824 31 H 0.128 0.872 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.176 0.824 37 H 0.091 0.909 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.374 -13.204 7.225 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.192 1.192 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.099 0.901 9 C 0.004 3.996 10 N -0.171 5.171 11 C -0.134 4.134 12 C -0.020 4.020 13 O -0.198 6.198 14 C -0.018 4.018 15 C -0.046 4.046 16 N -0.195 5.195 17 C 0.033 3.967 18 C -0.115 4.115 19 C -0.193 4.193 20 C -0.197 4.197 21 N -0.191 5.191 22 C -0.096 4.096 23 C -0.127 4.127 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.017 0.983 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.193 0.807 31 H 0.146 0.854 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.193 0.807 37 H 0.109 0.891 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 19.060 -13.988 7.230 24.723 hybrid contribution 0.213 2.294 -0.096 2.305 sum 19.273 -11.694 7.134 23.645 Atomic orbital electron populations 1.69883 1.06123 1.26974 1.50586 1.24914 0.94781 0.98870 0.94741 0.86871 0.80329 0.84046 0.78580 1.20201 1.19214 1.20935 1.20915 0.88288 0.94924 1.50776 0.90069 1.20757 0.98286 0.84588 0.96011 1.69012 1.09311 1.24322 1.14451 1.24340 0.94555 1.00179 0.94308 1.24645 0.84548 1.01021 0.91783 1.86227 1.47715 1.29396 1.56413 1.20933 0.96155 0.88695 0.96054 1.22696 0.92487 0.97064 0.92399 1.68089 1.32428 0.99057 1.19894 1.21945 0.87998 0.92733 0.93989 1.20521 0.93029 0.94524 1.03391 1.23021 0.99937 1.03216 0.93162 1.22986 0.96805 1.00409 0.99487 1.67988 1.14374 1.29752 1.07000 1.23531 1.00266 0.87691 0.98147 1.24100 0.93292 0.97196 0.98086 0.92513 0.95073 0.98261 0.90432 0.89341 0.87122 0.80705 0.85446 0.87253 0.88244 0.88018 0.88641 0.80709 0.89109 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.05 27.47 -169.99 -4.67 16.38 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.51 -14.39 9.94 -34.44 -0.34 -14.73 16 8 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 9 C 0.13 3.06 3.64 -4.97 -0.02 3.04 16 10 N -0.45 -8.84 6.32 -246.15 -1.55 -10.39 16 11 C 0.00 -0.08 7.55 -7.56 -0.06 -0.13 16 12 C 0.04 0.50 4.07 -26.20 -0.11 0.39 16 13 O -0.29 -3.81 10.21 -19.49 -0.20 -4.01 16 14 C 0.03 0.40 6.72 -38.95 -0.26 0.14 16 15 C 0.12 1.39 11.27 -17.04 -0.19 1.20 16 16 N -0.48 -5.82 9.34 -10.61 -0.10 -5.92 16 17 C 0.30 3.70 7.31 -157.21 -1.15 2.55 16 18 C -0.09 -0.91 6.23 -91.77 -0.57 -1.48 16 19 C -0.16 -1.21 10.01 -26.73 -0.27 -1.48 16 20 C -0.16 -1.23 10.23 -26.73 -0.27 -1.50 16 21 N -0.48 -6.30 10.33 -10.62 -0.11 -6.41 16 22 C 0.07 0.88 10.29 -17.04 -0.18 0.70 16 23 C 0.00 0.04 7.52 -7.56 -0.06 -0.02 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.03 0.74 7.14 -51.93 -0.37 0.36 16 26 H 0.00 -0.01 6.73 -51.93 -0.35 -0.36 16 27 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16 28 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.11 1.31 6.03 -51.93 -0.31 1.00 16 30 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.11 0.95 7.54 -51.93 -0.39 0.56 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.18 1.89 6.05 -52.49 -0.32 1.57 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.14 7.91 -51.93 -0.41 0.73 16 LS Contribution 320.72 15.07 4.83 4.83 Total: -1.00 -31.55 320.72 -9.68 -41.23 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.09 Total: 0.21 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -3.57 Total: -9.44 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.99 Total: -49.21 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.20 Total: -4.01 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.55 -9.68 -41.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230751005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.923 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds