Wall clock time and date at job start Mon Mar 30 2020 02:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00026 * 2 1 4 4 H 1.48491 * 109.47084 * 89.99984 * 3 2 1 5 5 H 1.48506 * 109.47012 * 209.99965 * 3 2 1 6 6 H 1.48501 * 109.46798 * 329.99612 * 3 2 1 7 7 C 1.37876 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99929 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00319 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46867 * 180.02562 * 9 7 2 11 11 C 1.47477 * 111.00034 * 265.96662 * 10 9 7 12 12 C 1.53502 * 87.93626 * 221.30013 * 11 10 9 13 13 O 1.42900 * 114.17247 * 139.67118 * 12 11 10 14 14 C 1.35922 * 116.99942 * 108.35864 * 13 12 11 15 15 C 1.39098 * 120.85663 * 173.92664 * 14 13 12 16 16 N 1.32282 * 119.03465 * 179.72049 * 15 14 13 17 17 C 1.31785 * 120.87677 * 0.56339 * 16 15 14 18 18 C 1.50700 * 119.05695 * 179.68553 * 17 16 15 19 19 C 1.52998 * 117.49715 * 8.64438 * 18 17 16 20 20 C 1.52999 * 60.00089 * 252.50920 * 19 18 17 21 21 N 1.31789 * 121.88966 * 359.70747 * 17 16 15 22 22 C 1.32291 * 120.87369 * 0.02562 * 21 17 16 23 23 C 1.47478 * 110.99588 * 169.99954 * 10 9 7 24 24 H 0.97001 * 120.00236 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47020 * 299.99718 * 9 7 2 26 26 H 1.08995 * 109.46855 * 60.00428 * 9 7 2 27 27 H 1.09002 * 113.47921 * 336.07079 * 11 10 9 28 28 H 1.09003 * 113.47368 * 106.53052 * 11 10 9 29 29 H 1.09001 * 114.17143 * 272.38276 * 12 11 10 30 30 H 1.08000 * 120.48049 * 359.97438 * 15 14 13 31 31 H 1.09004 * 115.55129 * 154.35472 * 18 17 16 32 32 H 1.09001 * 117.50272 * 0.02562 * 19 18 17 33 33 H 1.09003 * 117.49759 * 145.02036 * 19 18 17 34 34 H 1.09001 * 117.50157 * 252.50845 * 20 19 18 35 35 H 1.09003 * 117.49671 * 107.49329 * 20 19 18 36 36 H 1.07999 * 120.47910 * 179.97438 * 22 21 17 37 37 H 1.09004 * 113.47809 * 253.46932 * 23 10 9 38 38 H 1.09000 * 113.47822 * 23.93362 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6526 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0012 -2.5790 0.0010 11 6 4.2681 -3.0453 1.3744 12 6 5.5417 -3.7152 0.8401 13 8 6.6730 -3.5951 1.7049 14 6 7.0769 -4.7199 2.3522 15 6 8.2408 -4.7257 3.1139 16 7 8.5973 -5.8388 3.7333 17 6 7.8721 -6.9341 3.6267 18 6 8.3203 -8.1813 4.3441 19 6 9.4886 -8.0518 5.3234 20 6 9.6918 -8.7524 3.9785 21 7 6.7666 -6.9701 2.9103 22 6 6.3405 -5.8966 2.2651 23 6 5.4558 -2.6252 -0.2375 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 -0.8888 26 1 3.8745 -0.6800 0.8911 27 1 4.4654 -2.2359 2.0773 28 1 3.5270 -3.7541 1.7440 29 1 5.3898 -4.7271 0.4644 30 1 8.8425 -3.8331 3.2017 31 1 7.5303 -8.8898 4.5934 32 1 9.9329 -7.0644 5.4492 33 1 9.4674 -8.6750 6.2174 34 1 9.8043 -9.8365 3.9877 35 1 10.2701 -8.2260 3.2191 36 1 5.4338 -5.9334 1.6795 37 1 5.7215 -2.9780 -1.2341 38 1 5.9701 -1.7036 0.0350 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230751005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:40 Heat of formation + Delta-G solvation = 65.099277 kcal Electronic energy + Delta-G solvation = -20127.536142 eV Core-core repulsion = 16972.344946 eV Total energy + Delta-G solvation = -3155.191196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.50216 -41.28816 -39.00023 -37.62332 -35.01286 -34.85160 -32.17320 -31.32276 -27.78887 -26.99802 -25.90335 -25.68704 -23.36279 -23.19061 -22.16018 -21.13856 -19.61296 -19.05741 -18.81773 -17.94236 -16.99577 -16.72414 -16.39725 -16.15886 -15.84725 -15.60643 -15.11212 -14.96124 -14.58462 -14.49202 -13.97279 -13.78873 -13.46369 -13.09723 -12.90809 -12.63707 -12.50824 -12.29544 -12.01598 -11.92574 -11.79319 -11.69382 -11.51548 -11.37345 -11.32441 -10.83015 -10.31008 -9.83515 -9.57270 -8.32398 -6.37365 -0.20176 -0.10617 1.32770 1.34682 1.45110 1.78191 2.30981 2.43402 2.79618 2.95108 2.99425 3.11218 3.16286 3.22704 3.28432 3.73543 3.78006 3.93008 4.00542 4.09526 4.14318 4.34172 4.39926 4.50857 4.53555 4.69210 4.70084 4.77215 4.79971 4.80987 4.93778 5.13687 5.20152 5.33670 5.39418 5.60934 5.71734 5.86412 6.08989 6.45401 6.69186 6.96928 7.26062 8.84505 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.047381 B = 0.002967 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.813467 B = 9434.608257 C = 9595.928630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.245 1.245 6 H -0.281 1.281 7 C -0.521 4.521 8 H 0.034 0.966 9 C 0.140 3.860 10 N -0.476 5.476 11 C -0.013 4.013 12 C 0.063 3.937 13 O -0.289 6.289 14 C 0.020 3.980 15 C 0.126 3.874 16 N -0.489 5.489 17 C 0.293 3.707 18 C -0.118 4.118 19 C -0.146 4.146 20 C -0.148 4.148 21 N -0.499 5.499 22 C 0.067 3.933 23 C 0.004 3.996 24 H 0.268 0.732 25 H 0.035 0.965 26 H 0.006 0.994 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.132 0.868 30 H 0.200 0.800 31 H 0.133 0.867 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.186 0.814 37 H 0.111 0.889 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.193 -13.196 7.618 26.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.169 1.169 6 H -0.206 1.206 7 C -0.560 4.560 8 H 0.052 0.948 9 C 0.013 3.987 10 N -0.200 5.200 11 C -0.143 4.143 12 C 0.006 3.994 13 O -0.199 6.199 14 C -0.030 4.030 15 C -0.042 4.042 16 N -0.203 5.203 17 C 0.027 3.973 18 C -0.138 4.138 19 C -0.183 4.183 20 C -0.186 4.186 21 N -0.213 5.213 22 C -0.100 4.100 23 C -0.124 4.124 24 H 0.077 0.923 25 H 0.053 0.947 26 H 0.024 0.976 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.149 0.851 30 H 0.217 0.783 31 H 0.151 0.849 32 H 0.117 0.883 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.203 0.797 37 H 0.129 0.871 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 21.905 -14.007 7.625 27.095 hybrid contribution -0.665 2.146 -0.165 2.253 sum 21.240 -11.860 7.460 25.445 Atomic orbital electron populations 1.70050 1.08250 1.28277 1.52219 1.25917 0.95670 1.03353 0.94184 0.85685 0.79546 0.78318 0.79248 1.19150 1.16871 1.20607 1.21194 0.91099 0.93255 1.50409 0.94796 1.20513 0.94967 0.87105 0.96148 1.68868 1.12660 1.21951 1.16475 1.24397 0.96526 1.00287 0.93044 1.24315 0.83166 1.01362 0.90525 1.86202 1.47219 1.29842 1.56604 1.20975 0.96782 0.88426 0.96835 1.23147 0.92207 0.97655 0.91210 1.68198 1.32542 0.99254 1.20277 1.22515 0.87648 0.93677 0.93493 1.20702 0.94113 0.94094 1.04854 1.23081 0.98188 1.03143 0.93910 1.23058 0.94817 1.01571 0.99136 1.68048 1.15129 1.30196 1.07913 1.23741 1.00562 0.87699 0.98002 1.24156 0.90271 0.98172 0.99846 0.92309 0.94741 0.97636 0.91087 0.89746 0.85070 0.78317 0.84896 0.88252 0.86106 0.85856 0.89520 0.79729 0.87061 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 2 C 0.01 0.36 5.47 84.66 0.46 0.83 16 3 Si 0.95 43.14 27.47 68.60 1.88 45.02 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.25 -10.19 6.54 99.48 0.65 -9.54 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.52 -30.13 9.94 25.60 0.25 -29.87 16 8 H 0.03 2.21 8.06 -2.91 -0.02 2.18 16 9 C 0.14 6.49 3.64 85.56 0.31 6.80 16 10 N -0.48 -18.52 6.32 -933.07 -5.89 -24.42 16 11 C -0.01 -0.44 7.55 83.56 0.63 0.19 16 12 C 0.06 1.60 4.07 30.94 0.13 1.72 16 13 O -0.29 -7.01 10.21 -92.67 -0.95 -7.95 16 14 C 0.02 0.46 6.72 22.68 0.15 0.62 16 15 C 0.13 2.65 11.27 84.83 0.96 3.60 16 16 N -0.49 -11.13 9.34 -187.49 -1.75 -12.88 16 17 C 0.29 6.90 7.31 138.75 1.01 7.92 16 18 C -0.12 -2.09 6.23 -11.54 -0.07 -2.16 16 19 C -0.15 -1.97 10.01 30.59 0.31 -1.66 16 20 C -0.15 -1.98 10.23 30.59 0.31 -1.67 16 21 N -0.50 -12.72 10.33 -187.50 -1.94 -14.65 16 22 C 0.07 1.57 10.29 84.83 0.87 2.44 16 23 C 0.00 0.12 7.52 83.57 0.63 0.75 16 24 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 25 H 0.03 1.56 7.14 -2.39 -0.02 1.55 16 26 H 0.01 0.26 6.73 -2.39 -0.02 0.25 16 27 H 0.07 2.44 7.42 -2.39 -0.02 2.42 16 28 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.13 2.81 6.03 -2.39 -0.01 2.79 16 30 H 0.20 3.04 8.06 -2.91 -0.02 3.02 16 31 H 0.13 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.10 1.57 7.54 -2.39 -0.02 1.55 16 33 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.19 3.76 6.05 -2.91 -0.02 3.74 16 37 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.08 2.23 7.91 -2.39 -0.02 2.22 16 Total: -1.00 -69.64 320.72 -1.37 -71.02 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.01 Total: 13.32 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 5.96 Total: -10.51 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -9.28 Total: -110.90 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.95 Total: -7.95 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.02 kcal Total: -69.64 -1.37 -71.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230751005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.118 kcal (2) G-P(sol) polarization free energy of solvation -69.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds