Wall clock time and date at job start Mon Mar 30 2020 02:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46883 * 59.99842 * 3 2 1 6 6 H 1.48496 * 109.47035 * 300.00140 * 3 2 1 7 7 C 1.38805 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99876 * 207.28212 * 7 2 1 9 9 N 1.36938 * 120.00326 * 27.28488 * 7 2 1 10 10 C 1.47423 * 125.64840 * 13.30689 * 9 7 2 11 11 C 1.55125 * 104.72395 * 155.81746 * 10 9 7 12 12 C 1.55154 * 101.48572 * 37.29433 * 11 10 9 13 13 H 1.09003 * 110.71834 * 82.69257 * 12 11 10 14 14 O 1.42899 * 110.87555 * 205.89627 * 12 11 10 15 15 C 1.35915 * 117.00441 * 205.06538 * 14 12 11 16 16 C 1.39094 * 120.85339 * 359.72350 * 15 14 12 17 17 N 1.32292 * 119.03211 * 179.71914 * 16 15 14 18 18 C 1.31791 * 120.87507 * 0.56494 * 17 16 15 19 19 C 1.50704 * 119.05404 * 179.68375 * 18 17 16 20 20 C 1.53001 * 117.49683 * 8.76727 * 19 18 17 21 21 C 1.53002 * 117.49550 * 300.10684 * 19 18 17 22 22 N 1.31785 * 121.88793 * 359.70550 * 18 17 16 23 23 C 1.32281 * 120.87911 * 0.02562 * 22 18 17 24 24 C 1.47022 * 125.65145 * 193.61334 * 9 7 2 25 25 H 0.96994 * 120.00297 * 185.84782 * 1 2 3 26 26 H 1.09002 * 110.36499 * 274.75332 * 10 9 7 27 27 H 1.09005 * 110.36367 * 37.06338 * 10 9 7 28 28 H 1.09001 * 111.19051 * 279.19096 * 11 10 9 29 29 H 1.09003 * 110.90391 * 155.27343 * 11 10 9 30 30 H 1.07998 * 120.48681 * 359.97438 * 16 15 14 31 31 H 1.08998 * 115.54879 * 154.44143 * 19 18 17 32 32 H 1.08996 * 117.50307 * 359.97438 * 20 19 18 33 33 H 1.08996 * 117.49692 * 145.02102 * 20 19 18 34 34 H 1.09002 * 117.49770 * 214.97535 * 21 19 18 35 35 H 1.08997 * 117.50254 * 359.97438 * 21 19 18 36 36 H 1.07996 * 120.48402 * 179.97438 * 23 22 18 37 37 H 1.08999 * 109.88184 * 300.44569 * 24 9 7 38 38 H 1.09000 * 109.87675 * 61.44592 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 1.2125 6 1 1.8915 2.3964 -1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0000 -1.2540 0.4293 9 7 1.4397 -2.3223 -0.5426 10 6 0.2378 -2.3469 -1.3960 11 6 0.3682 -3.6527 -2.2231 12 6 0.9848 -4.6199 -1.1784 13 1 0.2095 -5.0425 -0.5393 14 8 1.7283 -5.6572 -1.8213 15 6 1.8759 -6.8239 -1.1399 16 6 1.3270 -6.9838 0.1281 17 7 1.4879 -8.1367 0.7566 18 6 2.1664 -9.1208 0.2014 19 6 2.3304 -10.4143 0.9571 20 6 1.5243 -10.5864 2.2461 21 6 3.0361 -10.3553 2.3135 22 7 2.7059 -9.0059 -0.9955 23 6 2.5850 -7.8866 -1.6901 24 6 1.9207 -3.7004 -0.3661 25 1 -0.4850 -0.8356 0.0856 26 1 -0.6627 -2.3720 -0.7823 27 1 0.2237 -1.4797 -2.0563 28 1 1.0380 -3.5161 -3.0722 29 1 -0.6099 -4.0043 -2.5516 30 1 0.7740 -6.1800 0.5911 31 1 2.4932 -11.3000 0.3432 32 1 0.8757 -9.7640 2.5478 33 1 1.1570 -11.5856 2.4803 34 1 3.6627 -11.2026 2.5920 35 1 3.3820 -9.3812 2.6590 36 1 3.0300 -7.7993 -2.6702 37 1 2.9412 -3.7874 -0.7390 38 1 1.8874 -3.9723 0.6889 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230751063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:44 Heat of formation + Delta-G solvation = 67.966221 kcal Electronic energy + Delta-G solvation = -20663.994766 eV Core-core repulsion = 17508.927891 eV Total energy + Delta-G solvation = -3155.066875 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42961 -39.26478 -37.24349 -36.49475 -33.83691 -32.67164 -30.73254 -29.32448 -27.80382 -25.13539 -24.92956 -24.12333 -22.53901 -21.46318 -20.72112 -20.42392 -18.37163 -17.96106 -17.52574 -16.95201 -15.73069 -15.42778 -14.84115 -14.70380 -14.34287 -14.09253 -13.72098 -13.57373 -13.23681 -12.89092 -12.63383 -12.34002 -11.83502 -11.70670 -11.44750 -11.09149 -10.99948 -10.94879 -10.74689 -10.66796 -10.60676 -10.47085 -10.27572 -10.09460 -9.62019 -9.27310 -8.58157 -8.47648 -7.09676 -6.19465 -3.23771 0.83957 0.89743 2.96778 3.33708 3.47963 3.50859 3.64367 3.70587 3.86119 4.07707 4.22195 4.50868 4.66604 4.71940 4.82394 4.85126 4.90169 4.97616 5.17835 5.20973 5.26425 5.45255 5.47627 5.56081 5.67033 5.80467 5.89739 5.97360 6.02155 6.09675 6.13484 6.31085 6.39288 6.76899 6.80949 6.84439 7.24369 7.65231 7.97633 8.37484 8.89838 9.70424 10.20533 11.14026 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.031125 B = 0.003576 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.396809 B = 7827.997649 C = 8195.121943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.024 4.024 3 Si 1.071 2.929 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.339 4.339 8 H 0.069 0.931 9 N -0.600 5.600 10 C 0.144 3.856 11 C -0.126 4.126 12 C 0.064 3.936 13 H 0.081 0.919 14 O -0.288 6.288 15 C 0.036 3.964 16 C 0.069 3.931 17 N -0.479 5.479 18 C 0.296 3.704 19 C -0.094 4.094 20 C -0.156 4.156 21 C -0.159 4.159 22 N -0.479 5.479 23 C 0.120 3.880 24 C 0.120 3.880 25 H 0.269 0.731 26 H 0.031 0.969 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.174 0.826 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.176 0.824 37 H 0.039 0.961 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 -18.475 -0.860 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.225 4.225 3 Si 0.900 3.100 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.215 1.215 7 C -0.466 4.466 8 H 0.087 0.913 9 N -0.329 5.329 10 C 0.018 3.982 11 C -0.165 4.165 12 C 0.008 3.992 13 H 0.099 0.901 14 O -0.198 6.198 15 C -0.015 4.015 16 C -0.098 4.098 17 N -0.193 5.193 18 C 0.030 3.970 19 C -0.114 4.114 20 C -0.194 4.194 21 C -0.197 4.197 22 N -0.192 5.192 23 C -0.048 4.048 24 C -0.007 4.007 25 H 0.081 0.919 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.191 0.809 31 H 0.145 0.855 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.193 0.807 37 H 0.057 0.943 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.240 -17.498 -0.611 17.652 hybrid contribution -0.010 -0.737 -0.190 0.761 sum 2.230 -18.235 -0.801 18.389 Atomic orbital electron populations 1.70750 1.06610 1.30305 1.48401 1.25781 0.96450 1.01015 0.99265 0.83451 0.74353 0.75373 0.76782 1.21790 1.22065 1.21518 1.19820 0.99505 0.87421 1.39856 0.91348 1.44458 1.31148 1.00635 1.56610 1.21655 0.90391 0.94092 0.92012 1.23029 1.00063 0.95445 0.97936 1.23771 0.93390 0.85894 0.96192 0.90135 1.86193 1.70348 1.19967 1.43285 1.20958 0.97733 0.89152 0.93702 1.23511 0.98645 0.96073 0.91618 1.67945 1.14917 1.00083 1.36385 1.21935 0.92284 0.94071 0.88713 1.20500 1.08034 0.93248 0.89579 1.23031 0.94437 1.03534 0.98378 1.23003 0.95653 1.03618 0.97435 1.68106 1.19298 1.23996 1.07794 1.22681 0.95539 0.86177 1.00379 1.21700 0.96344 0.86321 0.96287 0.91902 0.95103 0.91817 0.90068 0.90808 0.80906 0.85538 0.87240 0.88283 0.88044 0.88567 0.80655 0.94343 0.95418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.16 12.82 55.49 0.71 -26.45 16 2 C -0.02 -0.67 5.09 -17.43 -0.09 -0.76 16 3 Si 1.07 25.12 30.00 -169.99 -5.10 20.02 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.34 -9.47 10.05 -15.06 -0.15 -9.63 16 8 H 0.07 1.92 7.96 -52.49 -0.42 1.50 16 9 N -0.60 -14.94 3.33 -169.94 -0.57 -15.51 16 10 C 0.14 3.19 5.22 -2.41 -0.01 3.18 16 11 C -0.13 -2.16 6.83 -24.47 -0.17 -2.33 16 12 C 0.06 1.06 2.84 -24.90 -0.07 0.99 16 13 H 0.08 1.21 5.98 -51.93 -0.31 0.90 16 14 O -0.29 -4.47 9.89 -19.47 -0.19 -4.67 16 15 C 0.04 0.51 6.73 -38.95 -0.26 0.25 16 16 C 0.07 0.99 10.28 -17.04 -0.18 0.81 16 17 N -0.48 -6.90 9.34 -10.61 -0.10 -7.00 16 18 C 0.30 4.06 7.31 -157.20 -1.15 2.91 16 19 C -0.09 -1.00 6.23 -91.77 -0.57 -1.57 16 20 C -0.16 -1.43 10.01 -26.69 -0.27 -1.69 16 21 C -0.16 -1.46 10.24 -26.69 -0.27 -1.73 16 22 N -0.48 -6.63 10.33 -10.61 -0.11 -6.74 16 23 C 0.12 1.58 11.27 -17.04 -0.19 1.39 16 24 C 0.12 2.46 7.01 -3.07 -0.02 2.44 16 25 H 0.27 7.88 5.83 -40.82 -0.24 7.64 16 26 H 0.03 0.71 6.84 -51.93 -0.36 0.36 16 27 H 0.06 1.55 7.73 -51.93 -0.40 1.15 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.17 2.34 6.02 -52.49 -0.32 2.03 16 31 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.11 1.15 7.54 -51.93 -0.39 0.76 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.18 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 317.15 15.07 4.78 4.78 Total: -1.00 -31.35 317.15 -9.00 -40.35 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.03 Total: 0.95 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -3.40 Total: -5.74 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.06 Total: -55.69 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.19 Total: -4.67 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.10 Total: 20.02 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.35 -9.00 -40.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230751063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.316 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds