Wall clock time and date at job start Mon Mar 30 2020 02:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46883 * 59.99842 * 3 2 1 6 6 H 1.48496 * 109.47035 * 300.00140 * 3 2 1 7 7 C 1.38805 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99876 * 207.28212 * 7 2 1 9 9 N 1.36938 * 120.00326 * 27.28488 * 7 2 1 10 10 C 1.47423 * 125.64840 * 13.30689 * 9 7 2 11 11 C 1.55125 * 104.72395 * 155.81746 * 10 9 7 12 12 C 1.55154 * 101.48572 * 37.29433 * 11 10 9 13 13 H 1.09003 * 110.71834 * 82.69257 * 12 11 10 14 14 O 1.42899 * 110.87555 * 205.89627 * 12 11 10 15 15 C 1.35915 * 117.00441 * 205.06538 * 14 12 11 16 16 C 1.39094 * 120.85339 * 359.72350 * 15 14 12 17 17 N 1.32292 * 119.03211 * 179.71914 * 16 15 14 18 18 C 1.31791 * 120.87507 * 0.56494 * 17 16 15 19 19 C 1.50704 * 119.05404 * 179.68375 * 18 17 16 20 20 C 1.53001 * 117.49683 * 8.76727 * 19 18 17 21 21 C 1.53002 * 117.49550 * 300.10684 * 19 18 17 22 22 N 1.31785 * 121.88793 * 359.70550 * 18 17 16 23 23 C 1.32281 * 120.87911 * 0.02562 * 22 18 17 24 24 C 1.47022 * 125.65145 * 193.61334 * 9 7 2 25 25 H 0.96994 * 120.00297 * 185.84782 * 1 2 3 26 26 H 1.09002 * 110.36499 * 274.75332 * 10 9 7 27 27 H 1.09005 * 110.36367 * 37.06338 * 10 9 7 28 28 H 1.09001 * 111.19051 * 279.19096 * 11 10 9 29 29 H 1.09003 * 110.90391 * 155.27343 * 11 10 9 30 30 H 1.07998 * 120.48681 * 359.97438 * 16 15 14 31 31 H 1.08998 * 115.54879 * 154.44143 * 19 18 17 32 32 H 1.08996 * 117.50307 * 359.97438 * 20 19 18 33 33 H 1.08996 * 117.49692 * 145.02102 * 20 19 18 34 34 H 1.09002 * 117.49770 * 214.97535 * 21 19 18 35 35 H 1.08997 * 117.50254 * 359.97438 * 21 19 18 36 36 H 1.07996 * 120.48402 * 179.97438 * 23 22 18 37 37 H 1.08999 * 109.88184 * 300.44569 * 24 9 7 38 38 H 1.09000 * 109.87675 * 61.44592 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 1.2125 6 1 1.8915 2.3964 -1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0000 -1.2540 0.4293 9 7 1.4397 -2.3223 -0.5426 10 6 0.2378 -2.3469 -1.3960 11 6 0.3682 -3.6527 -2.2231 12 6 0.9848 -4.6199 -1.1784 13 1 0.2095 -5.0425 -0.5393 14 8 1.7283 -5.6572 -1.8213 15 6 1.8759 -6.8239 -1.1399 16 6 1.3270 -6.9838 0.1281 17 7 1.4879 -8.1367 0.7566 18 6 2.1664 -9.1208 0.2014 19 6 2.3304 -10.4143 0.9571 20 6 1.5243 -10.5864 2.2461 21 6 3.0361 -10.3553 2.3135 22 7 2.7059 -9.0059 -0.9955 23 6 2.5850 -7.8866 -1.6901 24 6 1.9207 -3.7004 -0.3661 25 1 -0.4850 -0.8356 0.0856 26 1 -0.6627 -2.3720 -0.7823 27 1 0.2237 -1.4797 -2.0563 28 1 1.0380 -3.5161 -3.0722 29 1 -0.6099 -4.0043 -2.5516 30 1 0.7740 -6.1800 0.5911 31 1 2.4932 -11.3000 0.3432 32 1 0.8757 -9.7640 2.5478 33 1 1.1570 -11.5856 2.4803 34 1 3.6627 -11.2026 2.5920 35 1 3.3820 -9.3812 2.6590 36 1 3.0300 -7.7993 -2.6702 37 1 2.9412 -3.7874 -0.7390 38 1 1.8874 -3.9723 0.6889 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230751063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:43 Heat of formation + Delta-G solvation = 49.301052 kcal Electronic energy + Delta-G solvation = -20664.804149 eV Core-core repulsion = 17508.927891 eV Total energy + Delta-G solvation = -3155.876258 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.51023 -40.55332 -38.52383 -37.64703 -34.91633 -34.56795 -31.94082 -31.02958 -29.40172 -26.62464 -26.14094 -25.54155 -23.25304 -22.52574 -22.22248 -21.99606 -19.76596 -19.57021 -18.87283 -17.90786 -17.01902 -16.63375 -16.26136 -15.92658 -15.75606 -15.34361 -15.19320 -15.05056 -14.77566 -14.34958 -14.11581 -13.52859 -13.14475 -12.78885 -12.64034 -12.56193 -12.53266 -12.33783 -12.18065 -12.05125 -11.89736 -11.77366 -11.65662 -11.49452 -11.39717 -10.61577 -10.34675 -9.63113 -9.13627 -8.39425 -5.40170 -0.24245 -0.15715 1.56857 1.64399 1.73172 1.81637 2.39364 2.59610 2.77484 2.89580 3.08458 3.13066 3.21019 3.40157 3.43592 3.68026 3.70173 3.82477 3.92376 4.00237 4.10097 4.24864 4.32377 4.43907 4.56071 4.68805 4.72681 4.78067 4.80254 4.91958 4.96277 5.10629 5.16060 5.18336 5.30774 5.57185 5.67450 6.04026 6.25090 6.80839 6.92229 7.61465 8.15339 8.94216 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.031125 B = 0.003576 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.396809 B = 7827.997649 C = 8195.121943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.073 4.073 3 Si 1.120 2.880 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.352 4.352 8 H 0.059 0.941 9 N -0.624 5.624 10 C 0.145 3.855 11 C -0.110 4.110 12 C 0.082 3.918 13 H 0.101 0.899 14 O -0.287 6.287 15 C 0.020 3.980 16 C 0.063 3.937 17 N -0.494 5.494 18 C 0.291 3.709 19 C -0.111 4.111 20 C -0.148 4.148 21 C -0.152 4.152 22 N -0.489 5.489 23 C 0.129 3.871 24 C 0.117 3.883 25 H 0.259 0.741 26 H 0.020 0.980 27 H 0.034 0.966 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.176 0.824 31 H 0.142 0.858 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.079 0.921 36 H 0.203 0.797 37 H 0.030 0.970 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.668 -20.273 -1.276 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.269 4.269 3 Si 0.944 3.056 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.480 4.480 8 H 0.077 0.923 9 N -0.352 5.352 10 C 0.020 3.980 11 C -0.148 4.148 12 C 0.025 3.975 13 H 0.118 0.882 14 O -0.198 6.198 15 C -0.031 4.031 16 C -0.103 4.103 17 N -0.209 5.209 18 C 0.025 3.975 19 C -0.131 4.131 20 C -0.185 4.185 21 C -0.190 4.190 22 N -0.202 5.202 23 C -0.040 4.040 24 C -0.009 4.009 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.102 0.898 29 H 0.128 0.872 30 H 0.193 0.807 31 H 0.160 0.840 32 H 0.111 0.889 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.097 0.903 36 H 0.220 0.780 37 H 0.048 0.952 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.737 -19.335 -1.027 19.555 hybrid contribution -0.112 -0.302 -0.014 0.322 sum 2.625 -19.637 -1.041 19.839 Atomic orbital electron populations 1.70850 1.07427 1.29822 1.50615 1.27128 0.96602 1.04215 0.98927 0.82797 0.74053 0.71813 0.76903 1.20096 1.21564 1.21025 1.20045 0.99293 0.89052 1.39625 0.92316 1.44702 1.31855 1.01681 1.57008 1.21587 0.89052 0.95768 0.91611 1.22893 1.02199 0.92651 0.97073 1.23458 0.92677 0.85729 0.95634 0.88160 1.86170 1.70557 1.20054 1.42973 1.21034 0.98982 0.89095 0.93968 1.23616 0.98612 0.96313 0.91796 1.68016 1.15745 1.00377 1.36714 1.22593 0.91219 0.94837 0.88857 1.20727 1.09708 0.92414 0.90212 1.23084 0.94176 1.04353 0.96922 1.23067 0.96175 1.03781 0.95949 1.68230 1.19730 1.24179 1.08059 1.23152 0.94277 0.85419 1.01104 1.21781 0.96825 0.85374 0.96887 0.92971 0.96223 0.94781 0.89790 0.87210 0.80686 0.83988 0.88925 0.85644 0.85435 0.90281 0.78049 0.95218 0.95779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.96 12.82 21.65 0.28 -56.69 16 2 C -0.07 -4.14 5.09 84.86 0.43 -3.71 16 3 Si 1.12 51.05 30.00 68.60 2.06 53.11 16 4 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.35 -20.09 10.05 84.03 0.84 -19.25 16 8 H 0.06 3.37 7.96 -2.91 -0.02 3.35 16 9 N -0.62 -31.62 3.33 -691.57 -2.30 -33.92 16 10 C 0.14 6.51 5.22 86.93 0.45 6.97 16 11 C -0.11 -3.60 6.83 32.06 0.22 -3.38 16 12 C 0.08 2.61 2.84 31.78 0.09 2.70 16 13 H 0.10 2.84 5.98 -2.39 -0.01 2.82 16 14 O -0.29 -8.40 9.89 -92.60 -0.92 -9.31 16 15 C 0.02 0.53 6.73 22.68 0.15 0.69 16 16 C 0.06 1.75 10.28 84.83 0.87 2.62 16 17 N -0.49 -13.83 9.34 -187.49 -1.75 -15.58 16 18 C 0.29 7.57 7.31 138.76 1.01 8.59 16 19 C -0.11 -2.14 6.23 -11.54 -0.07 -2.22 16 20 C -0.15 -2.40 10.01 30.62 0.31 -2.09 16 21 C -0.15 -2.48 10.24 30.62 0.31 -2.17 16 22 N -0.49 -12.68 10.33 -187.49 -1.94 -14.61 16 23 C 0.13 3.13 11.27 84.83 0.96 4.08 16 24 C 0.12 4.83 7.01 86.73 0.61 5.43 16 25 H 0.26 15.66 5.83 -92.71 -0.54 15.12 16 26 H 0.02 0.93 6.84 -2.39 -0.02 0.92 16 27 H 0.03 1.70 7.73 -2.38 -0.02 1.68 16 28 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.18 4.63 6.02 -2.91 -0.02 4.61 16 31 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.09 1.85 7.54 -2.39 -0.02 1.83 16 33 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.20 3.66 8.06 -2.91 -0.02 3.64 16 37 H 0.03 1.27 8.06 -2.39 -0.02 1.26 16 38 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -68.48 317.15 2.92 -65.56 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.29 Total: 13.18 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 6.19 Total: -1.74 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -5.71 Total: -120.79 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.92 Total: -9.31 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.06 Total: 53.11 kcal Total: -68.48 2.92 -65.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230751063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.861 kcal (2) G-P(sol) polarization free energy of solvation -68.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds