Wall clock time and date at job start Mon Mar 30 2020 02:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99547 * 2 1 4 4 H 1.48502 * 109.47307 * 239.99912 * 3 2 1 5 5 H 1.48499 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47147 * 119.99832 * 3 2 1 7 7 C 1.38812 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99876 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64542 * 0.04312 * 9 7 2 11 11 C 1.54913 * 104.82956 * 204.09150 * 10 9 7 12 12 C 1.55163 * 101.58046 * 322.99107 * 11 10 9 13 13 H 1.09001 * 110.71963 * 277.13639 * 12 11 10 14 14 O 1.42897 * 110.87191 * 153.93621 * 12 11 10 15 15 C 1.35922 * 117.00325 * 161.43319 * 14 12 11 16 16 C 1.39094 * 120.84981 * 4.98413 * 15 14 12 17 17 N 1.32291 * 119.03218 * 179.71725 * 16 15 14 18 18 C 1.31795 * 120.87247 * 0.56822 * 17 16 15 19 19 C 1.50698 * 119.05157 * 179.68412 * 18 17 16 20 20 C 1.52999 * 117.50030 * 8.76793 * 19 18 17 21 21 C 1.52998 * 117.50000 * 300.10646 * 19 18 17 22 22 N 1.31784 * 121.88973 * 359.70877 * 18 17 16 23 23 C 1.32294 * 120.87841 * 359.97438 * 22 18 17 24 24 C 1.47022 * 125.64912 * 179.97438 * 9 7 2 25 25 H 0.96998 * 120.00442 * 0.02562 * 1 2 3 26 26 H 1.08999 * 110.36851 * 322.93313 * 10 9 7 27 27 H 1.09000 * 110.36587 * 85.25274 * 10 9 7 28 28 H 1.08996 * 111.00346 * 204.91973 * 11 10 9 29 29 H 1.08997 * 111.00193 * 81.06412 * 11 10 9 30 30 H 1.07996 * 120.48586 * 0.02562 * 16 15 14 31 31 H 1.09002 * 115.55169 * 154.44016 * 19 18 17 32 32 H 1.08997 * 117.49939 * 359.97438 * 20 19 18 33 33 H 1.09002 * 117.49552 * 145.02164 * 20 19 18 34 34 H 1.08999 * 117.50413 * 214.98470 * 21 19 18 35 35 H 1.09008 * 117.49686 * 0.02562 * 21 19 18 36 36 H 1.07999 * 120.47890 * 180.02562 * 23 22 18 37 37 H 1.08995 * 109.87818 * 59.55909 * 24 9 7 38 38 H 1.08997 * 110.00950 * 298.46822 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3258 -2.3881 0.0005 10 6 -0.1413 -2.5332 -0.0009 11 6 -0.4019 -3.9323 0.6110 12 6 0.7788 -4.7524 0.0271 13 1 0.5472 -5.0982 -0.9803 14 8 1.1017 -5.8553 0.8764 15 6 1.8277 -6.8649 0.3277 16 6 2.3184 -6.7669 -0.9701 17 7 3.0255 -7.7688 -1.4665 18 6 3.2568 -8.8522 -0.7526 19 6 4.0614 -9.9717 -1.3613 20 6 4.7409 -9.7034 -2.7056 21 6 3.5175 -10.6208 -2.6355 22 7 2.8043 -8.9849 0.4780 23 6 2.0944 -8.0248 1.0475 24 6 1.9321 -3.7274 0.0005 25 1 -0.4851 0.8400 -0.0004 26 1 -0.5998 -1.7588 0.6141 27 1 -0.5261 -2.4870 -1.0197 28 1 -1.3589 -4.3328 0.2766 29 1 -0.3533 -3.8979 1.6993 30 1 2.1291 -5.8838 -1.5622 31 1 4.5839 -10.6144 -0.6527 32 1 4.6056 -8.7174 -3.1500 33 1 5.7102 -10.1699 -2.8815 34 1 3.6824 -11.6904 -2.7654 35 1 2.5779 -10.2378 -3.0338 36 1 1.7270 -8.1401 2.0565 37 1 2.5580 -3.8509 0.8843 38 1 2.5306 -3.8659 -0.8998 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230751064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:47 Heat of formation + Delta-G solvation = 70.216828 kcal Electronic energy + Delta-G solvation = -20657.523712 eV Core-core repulsion = 17502.554431 eV Total energy + Delta-G solvation = -3154.969282 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.35593 -39.14359 -37.13286 -36.28132 -33.76688 -32.47510 -30.69296 -29.31404 -27.66949 -25.14315 -24.91728 -24.08383 -22.50814 -21.38663 -20.55487 -20.39932 -18.16963 -17.85319 -16.96320 -16.86002 -15.72216 -15.24435 -14.95534 -14.67725 -14.36624 -14.16518 -13.69937 -13.48035 -12.84801 -12.64240 -12.42492 -11.99294 -11.76711 -11.64041 -11.37838 -11.10452 -10.98310 -10.91966 -10.83910 -10.65012 -10.60237 -10.38325 -10.18137 -9.96313 -9.72027 -9.21319 -8.76324 -8.45827 -6.99040 -5.76746 -3.19750 0.90997 0.96247 3.08639 3.35816 3.38954 3.40112 3.41376 3.76736 3.90334 4.15573 4.29790 4.41339 4.70840 4.79586 4.86809 4.91116 5.06733 5.13682 5.25172 5.38965 5.42164 5.46700 5.58292 5.61092 5.73807 5.92132 6.02976 6.07421 6.17332 6.28920 6.35034 6.41763 6.47535 6.84841 7.30884 7.34894 7.49867 7.70794 8.03894 8.21801 9.09323 9.69387 10.31294 11.27616 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.030549 B = 0.003625 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.336972 B = 7722.713917 C = 8234.501161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.918 3.082 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.599 5.599 10 C 0.152 3.848 11 C -0.132 4.132 12 C 0.064 3.936 13 H 0.078 0.922 14 O -0.289 6.289 15 C 0.037 3.963 16 C 0.070 3.930 17 N -0.480 5.480 18 C 0.295 3.705 19 C -0.093 4.093 20 C -0.156 4.156 21 C -0.159 4.159 22 N -0.480 5.480 23 C 0.119 3.881 24 C 0.117 3.883 25 H 0.255 0.745 26 H 0.116 0.884 27 H 0.018 0.982 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.175 0.825 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.176 0.824 37 H 0.036 0.964 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.205 -17.657 -2.017 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.748 3.252 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.027 3.973 11 C -0.171 4.171 12 C 0.008 3.992 13 H 0.096 0.904 14 O -0.199 6.199 15 C -0.015 4.015 16 C -0.097 4.097 17 N -0.194 5.194 18 C 0.028 3.972 19 C -0.113 4.113 20 C -0.194 4.194 21 C -0.198 4.198 22 N -0.193 5.193 23 C -0.050 4.050 24 C -0.010 4.010 25 H 0.066 0.934 26 H 0.133 0.867 27 H 0.036 0.964 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.191 0.809 31 H 0.144 0.856 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.193 0.807 37 H 0.054 0.946 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.593 -18.091 -2.197 18.574 hybrid contribution -0.023 1.659 0.191 1.670 sum 3.570 -16.431 -2.005 16.934 Atomic orbital electron populations 1.69729 1.04946 1.25223 1.57198 1.24803 0.95775 0.97835 1.01944 0.86099 0.78415 0.82662 0.78005 1.21083 1.21436 1.21019 1.19035 0.90577 0.82144 1.43809 0.90357 1.44350 1.01849 0.99319 1.87162 1.22036 0.84817 0.91749 0.98675 1.23210 0.94567 0.97540 1.01794 1.23833 0.98069 0.84066 0.93276 0.90441 1.86210 1.66139 1.27758 1.39793 1.20972 0.94688 0.91208 0.94591 1.23571 0.94777 0.98423 0.92941 1.67940 1.13037 1.00626 1.37817 1.21909 0.95819 0.92322 0.87115 1.20490 1.02482 0.97151 0.91139 1.23033 0.96506 1.02117 0.97724 1.22990 0.98988 0.98883 0.98914 1.68099 1.09618 1.29633 1.11941 1.22679 0.95119 0.86575 1.00577 1.21740 0.93659 0.86665 0.98927 0.93434 0.86659 0.96377 0.91250 0.90544 0.80857 0.85577 0.87197 0.88300 0.88112 0.88662 0.80711 0.94620 0.95547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.10 10.09 55.49 0.56 -25.54 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.24 10.27 -15.06 -0.15 -6.39 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -14.99 3.39 -170.08 -0.58 -15.57 16 10 C 0.15 3.52 5.89 -2.53 -0.01 3.50 16 11 C -0.13 -2.40 6.82 -24.58 -0.17 -2.57 16 12 C 0.06 1.09 2.77 -24.90 -0.07 1.02 16 13 H 0.08 1.20 6.62 -51.93 -0.34 0.86 16 14 O -0.29 -4.63 9.91 -19.49 -0.19 -4.82 16 15 C 0.04 0.54 6.67 -38.95 -0.26 0.28 16 16 C 0.07 1.03 10.05 -17.04 -0.17 0.86 16 17 N -0.48 -7.04 9.34 -10.61 -0.10 -7.14 16 18 C 0.29 4.10 7.31 -157.20 -1.15 2.96 16 19 C -0.09 -1.00 6.23 -91.77 -0.57 -1.58 16 20 C -0.16 -1.46 10.01 -26.69 -0.27 -1.73 16 21 C -0.16 -1.44 10.24 -26.69 -0.27 -1.72 16 22 N -0.48 -6.76 10.33 -10.61 -0.11 -6.87 16 23 C 0.12 1.59 11.27 -17.04 -0.19 1.40 16 24 C 0.12 2.39 6.55 -3.07 -0.02 2.37 16 25 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.12 3.01 5.87 -51.93 -0.30 2.70 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.17 2.44 5.52 -52.49 -0.29 2.15 16 31 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.11 1.18 7.54 -51.93 -0.39 0.79 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.18 1.88 8.06 -52.49 -0.42 1.45 16 37 H 0.04 0.76 8.06 -51.93 -0.42 0.34 16 38 H 0.03 0.53 7.48 -51.93 -0.39 0.14 16 LS Contribution 315.77 15.07 4.76 4.76 Total: -1.00 -29.88 315.77 -9.16 -39.03 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.06 Total: 1.44 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -3.41 Total: -1.90 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.23 Total: -55.12 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.19 Total: -4.82 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.88 -9.16 -39.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230751064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.249 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds