Wall clock time and date at job start Mon Mar 30 2020 02:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99547 * 2 1 4 4 H 1.48502 * 109.47307 * 239.99912 * 3 2 1 5 5 H 1.48499 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47147 * 119.99832 * 3 2 1 7 7 C 1.38812 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99876 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64542 * 0.04312 * 9 7 2 11 11 C 1.54913 * 104.82956 * 204.09150 * 10 9 7 12 12 C 1.55163 * 101.58046 * 322.99107 * 11 10 9 13 13 H 1.09001 * 110.71963 * 277.13639 * 12 11 10 14 14 O 1.42897 * 110.87191 * 153.93621 * 12 11 10 15 15 C 1.35922 * 117.00325 * 161.43319 * 14 12 11 16 16 C 1.39094 * 120.84981 * 4.98413 * 15 14 12 17 17 N 1.32291 * 119.03218 * 179.71725 * 16 15 14 18 18 C 1.31795 * 120.87247 * 0.56822 * 17 16 15 19 19 C 1.50698 * 119.05157 * 179.68412 * 18 17 16 20 20 C 1.52999 * 117.50030 * 8.76793 * 19 18 17 21 21 C 1.52998 * 117.50000 * 300.10646 * 19 18 17 22 22 N 1.31784 * 121.88973 * 359.70877 * 18 17 16 23 23 C 1.32294 * 120.87841 * 359.97438 * 22 18 17 24 24 C 1.47022 * 125.64912 * 179.97438 * 9 7 2 25 25 H 0.96998 * 120.00442 * 0.02562 * 1 2 3 26 26 H 1.08999 * 110.36851 * 322.93313 * 10 9 7 27 27 H 1.09000 * 110.36587 * 85.25274 * 10 9 7 28 28 H 1.08996 * 111.00346 * 204.91973 * 11 10 9 29 29 H 1.08997 * 111.00193 * 81.06412 * 11 10 9 30 30 H 1.07996 * 120.48586 * 0.02562 * 16 15 14 31 31 H 1.09002 * 115.55169 * 154.44016 * 19 18 17 32 32 H 1.08997 * 117.49939 * 359.97438 * 20 19 18 33 33 H 1.09002 * 117.49552 * 145.02164 * 20 19 18 34 34 H 1.08999 * 117.50413 * 214.98470 * 21 19 18 35 35 H 1.09008 * 117.49686 * 0.02562 * 21 19 18 36 36 H 1.07999 * 120.47890 * 180.02562 * 23 22 18 37 37 H 1.08995 * 109.87818 * 59.55909 * 24 9 7 38 38 H 1.08997 * 110.00950 * 298.46822 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3258 -2.3881 0.0005 10 6 -0.1413 -2.5332 -0.0009 11 6 -0.4019 -3.9323 0.6110 12 6 0.7788 -4.7524 0.0271 13 1 0.5472 -5.0982 -0.9803 14 8 1.1017 -5.8553 0.8764 15 6 1.8277 -6.8649 0.3277 16 6 2.3184 -6.7669 -0.9701 17 7 3.0255 -7.7688 -1.4665 18 6 3.2568 -8.8522 -0.7526 19 6 4.0614 -9.9717 -1.3613 20 6 4.7409 -9.7034 -2.7056 21 6 3.5175 -10.6208 -2.6355 22 7 2.8043 -8.9849 0.4780 23 6 2.0944 -8.0248 1.0475 24 6 1.9321 -3.7274 0.0005 25 1 -0.4851 0.8400 -0.0004 26 1 -0.5998 -1.7588 0.6141 27 1 -0.5261 -2.4870 -1.0197 28 1 -1.3589 -4.3328 0.2766 29 1 -0.3533 -3.8979 1.6993 30 1 2.1291 -5.8838 -1.5622 31 1 4.5839 -10.6144 -0.6527 32 1 4.6056 -8.7174 -3.1500 33 1 5.7102 -10.1699 -2.8815 34 1 3.6824 -11.6904 -2.7654 35 1 2.5779 -10.2378 -3.0338 36 1 1.7270 -8.1401 2.0565 37 1 2.5580 -3.8509 0.8843 38 1 2.5306 -3.8659 -0.8998 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230751064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:46 Heat of formation + Delta-G solvation = 52.913978 kcal Electronic energy + Delta-G solvation = -20658.274020 eV Core-core repulsion = 17502.554431 eV Total energy + Delta-G solvation = -3155.719590 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.45680 -40.43857 -38.30928 -37.55772 -34.86219 -34.36365 -31.94856 -30.99825 -29.28732 -26.75541 -26.05637 -25.43769 -23.21851 -22.44189 -22.17101 -21.90809 -19.40936 -19.26281 -18.60420 -17.86065 -17.06421 -16.76077 -16.24768 -16.06324 -15.67653 -15.35428 -14.94313 -14.82998 -14.34943 -14.24955 -13.76286 -13.48255 -13.14884 -12.99061 -12.71267 -12.53072 -12.38129 -12.25758 -12.12315 -12.07308 -11.99889 -11.84640 -11.50284 -11.42530 -11.36679 -10.79028 -10.31083 -9.58480 -8.98131 -7.83154 -5.28804 -0.19167 -0.11493 1.46466 1.49026 1.55501 1.83403 2.43745 2.47037 2.81818 2.93261 3.17132 3.24803 3.28132 3.51856 3.59540 3.80129 3.84579 3.95138 3.96368 4.04544 4.13233 4.33791 4.53891 4.61656 4.64438 4.80058 4.81087 4.81395 4.94644 4.96100 5.15484 5.21666 5.33449 5.40498 5.53811 5.70456 5.74115 6.11159 6.25036 6.96457 7.04515 7.69289 8.30954 9.18679 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.030549 B = 0.003625 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.336972 B = 7722.713917 C = 8234.501161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.981 3.019 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.622 5.622 10 C 0.153 3.847 11 C -0.118 4.118 12 C 0.082 3.918 13 H 0.098 0.902 14 O -0.290 6.290 15 C 0.020 3.980 16 C 0.065 3.935 17 N -0.495 5.495 18 C 0.290 3.710 19 C -0.112 4.112 20 C -0.151 4.151 21 C -0.147 4.147 22 N -0.489 5.489 23 C 0.127 3.873 24 C 0.115 3.885 25 H 0.251 0.749 26 H 0.083 0.917 27 H 0.003 0.997 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.176 0.824 31 H 0.140 0.860 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.083 0.917 36 H 0.202 0.798 37 H 0.026 0.974 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 -19.503 -2.145 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.809 3.191 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.350 5.350 10 C 0.028 3.972 11 C -0.156 4.156 12 C 0.025 3.975 13 H 0.116 0.884 14 O -0.201 6.201 15 C -0.030 4.030 16 C -0.101 4.101 17 N -0.209 5.209 18 C 0.024 3.976 19 C -0.132 4.132 20 C -0.189 4.189 21 C -0.185 4.185 22 N -0.203 5.203 23 C -0.041 4.041 24 C -0.011 4.011 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.020 0.980 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.193 0.807 31 H 0.158 0.842 32 H 0.110 0.890 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.101 0.899 36 H 0.219 0.781 37 H 0.044 0.956 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.310 -19.969 -2.328 20.561 hybrid contribution -0.181 2.133 0.218 2.152 sum 4.129 -17.836 -2.110 18.429 Atomic orbital electron populations 1.69971 1.06087 1.25475 1.57920 1.25616 0.96692 1.00886 1.02085 0.85115 0.77191 0.78613 0.78168 1.20425 1.21602 1.20383 1.19376 0.90999 0.83581 1.43637 0.90358 1.44628 1.02856 1.00337 1.87164 1.21820 0.83904 0.93988 0.97470 1.23003 0.96569 0.94709 1.01362 1.23520 0.95838 0.83765 0.94380 0.88421 1.86180 1.66764 1.27629 1.39478 1.21045 0.95629 0.91434 0.94932 1.23651 0.94741 0.98617 0.93118 1.68013 1.13636 1.01027 1.38216 1.22575 0.95205 0.92684 0.87127 1.20713 1.03349 0.97054 0.92085 1.23081 0.97883 1.01644 0.96254 1.23068 0.98276 1.00254 0.96868 1.68226 1.10148 1.29763 1.12152 1.23144 0.93865 0.85707 1.01381 1.21847 0.94884 0.85828 0.98563 0.93961 0.89889 0.97950 0.88011 0.90753 0.80742 0.84216 0.88963 0.85871 0.85437 0.89886 0.78132 0.95586 0.94954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.74 10.09 21.65 0.22 -54.52 16 2 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 3 Si 0.98 44.91 29.55 68.60 2.03 46.93 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.25 -13.76 10.27 84.03 0.86 -12.90 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.62 -31.58 3.39 -692.01 -2.35 -33.93 16 10 C 0.15 7.19 5.89 86.86 0.51 7.70 16 11 C -0.12 -4.15 6.82 31.99 0.22 -3.93 16 12 C 0.08 2.68 2.77 31.78 0.09 2.77 16 13 H 0.10 2.85 6.62 -2.39 -0.02 2.83 16 14 O -0.29 -8.80 9.91 -92.67 -0.92 -9.72 16 15 C 0.02 0.56 6.67 22.68 0.15 0.71 16 16 C 0.07 1.85 10.05 84.83 0.85 2.71 16 17 N -0.49 -14.04 9.34 -187.49 -1.75 -15.79 16 18 C 0.29 7.67 7.31 138.75 1.01 8.68 16 19 C -0.11 -2.21 6.23 -11.54 -0.07 -2.28 16 20 C -0.15 -2.52 10.01 30.62 0.31 -2.21 16 21 C -0.15 -2.30 10.24 30.62 0.31 -1.99 16 22 N -0.49 -12.93 10.33 -187.49 -1.94 -14.87 16 23 C 0.13 3.17 11.27 84.83 0.96 4.13 16 24 C 0.11 4.68 6.55 86.73 0.57 5.25 16 25 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 26 H 0.08 4.47 5.87 -2.39 -0.01 4.45 16 27 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 29 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.18 4.77 5.52 -2.91 -0.02 4.76 16 31 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.09 1.89 7.54 -2.39 -0.02 1.87 16 33 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.20 3.78 8.06 -2.91 -0.02 3.76 16 37 H 0.03 1.11 8.06 -2.39 -0.02 1.09 16 38 H 0.03 1.29 7.48 -2.39 -0.02 1.27 16 Total: -1.00 -64.81 315.77 2.60 -62.22 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.07 Total: 13.91 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 6.24 Total: 5.78 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -5.82 Total: -119.12 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.92 Total: -9.72 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.81 2.60 -62.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230751064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.131 kcal (2) G-P(sol) polarization free energy of solvation -64.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds