Wall clock time and date at job start Mon Mar 30 2020 02:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99873 * 2 1 4 4 H 1.48497 * 109.47422 * 85.00932 * 3 2 1 5 5 H 1.48499 * 109.46986 * 205.00760 * 3 2 1 6 6 H 1.48502 * 109.47269 * 325.00652 * 3 2 1 7 7 C 1.38809 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00189 * 187.32952 * 7 2 1 9 9 N 1.36936 * 120.00090 * 7.33747 * 7 2 1 10 10 C 1.47425 * 125.64977 * 185.52815 * 9 7 2 11 11 C 1.55124 * 104.72444 * 155.81615 * 10 9 7 12 12 C 1.55160 * 101.48722 * 37.29072 * 11 10 9 13 13 H 1.08998 * 110.71894 * 82.69997 * 12 11 10 14 14 O 1.42903 * 110.87199 * 205.90541 * 12 11 10 15 15 C 1.35696 * 116.99969 * 205.06738 * 14 12 11 16 16 C 1.39266 * 120.13990 * 179.72114 * 15 14 12 17 17 C 1.38637 * 117.91443 * 179.73463 * 16 15 14 18 18 C 1.38761 * 118.02798 * 0.52469 * 17 16 15 19 19 C 1.50695 * 120.02098 * 179.74998 * 18 17 16 20 20 C 1.53004 * 117.49450 * 343.72493 * 19 18 17 21 21 C 1.52997 * 117.49779 * 275.07214 * 19 18 17 22 22 N 1.31820 * 119.96647 * 359.73255 * 18 17 16 23 23 N 1.28346 * 122.26502 * 359.97438 * 22 18 17 24 24 C 1.47019 * 125.64551 * 5.82617 * 9 7 2 25 25 H 0.97002 * 120.00013 * 0.02562 * 1 2 3 26 26 H 1.09007 * 110.36357 * 274.73816 * 10 9 7 27 27 H 1.08993 * 110.36752 * 37.06556 * 10 9 7 28 28 H 1.09004 * 111.19034 * 279.18732 * 11 10 9 29 29 H 1.09001 * 110.94455 * 155.28780 * 11 10 9 30 30 H 1.07994 * 121.03831 * 359.97179 * 16 15 14 31 31 H 1.08007 * 120.98879 * 180.23078 * 17 16 15 32 32 H 1.08995 * 115.55264 * 129.39634 * 19 18 17 33 33 H 1.08999 * 117.50303 * 0.02562 * 20 19 18 34 34 H 1.09005 * 117.49454 * 145.01799 * 20 19 18 35 35 H 1.09003 * 117.49779 * 214.97855 * 21 19 18 36 36 H 1.09008 * 117.50042 * 359.96914 * 21 19 18 37 37 H 1.08997 * 109.88756 * 300.44606 * 24 9 7 38 38 H 1.09007 * 109.88075 * 61.45565 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 1.3947 5 1 3.5964 1.4120 -0.5919 6 1 1.5043 2.6200 -0.8029 7 6 2.0102 -1.2021 0.0005 8 1 3.0836 -1.2059 0.1199 9 7 1.3340 -2.3832 -0.1504 10 6 1.9254 -3.7302 -0.0542 11 6 0.7394 -4.6554 0.3248 12 6 -0.4173 -4.0274 -0.4969 13 1 -0.3994 -4.3876 -1.5255 14 8 -1.6811 -4.3016 0.1111 15 6 -2.7690 -4.2959 -0.6999 16 6 -4.0324 -4.5607 -0.1770 17 6 -5.1124 -4.5374 -1.0460 18 6 -4.8670 -4.2629 -2.3839 19 6 -6.0073 -4.2319 -3.3686 20 6 -7.3294 -4.8707 -2.9387 21 6 -6.4480 -5.5628 -3.9813 22 7 -3.6359 -4.0290 -2.7930 23 7 -2.6333 -4.0437 -1.9920 24 6 -0.1008 -2.5180 -0.4413 25 1 -0.4850 0.8401 -0.0004 26 1 2.3499 -4.0275 -1.0132 27 1 2.6887 -3.7548 0.7235 28 1 0.5294 -4.6091 1.3934 29 1 0.9297 -5.6816 0.0103 30 1 -4.1669 -4.7736 0.8731 31 1 -6.1144 -4.7319 -0.6930 32 1 -6.0587 -3.3454 -4.0006 33 1 -7.3746 -5.3130 -1.9435 34 1 -8.2507 -4.4045 -3.2882 35 1 -6.7896 -5.5518 -5.0163 36 1 -5.9128 -6.4608 -3.6724 37 1 -0.6851 -2.0455 0.3483 38 1 -0.3298 -2.0533 -1.4004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231026078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:44 Heat of formation + Delta-G solvation = 79.813365 kcal Electronic energy + Delta-G solvation = -20804.566671 eV Core-core repulsion = 17650.013526 eV Total energy + Delta-G solvation = -3154.553145 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.12439 -38.83707 -37.32853 -36.19375 -33.00944 -32.35574 -31.08173 -28.99695 -27.49068 -25.00150 -24.92885 -24.03688 -22.51772 -21.32775 -20.45610 -20.28708 -18.15964 -17.41143 -16.87063 -16.64533 -15.71895 -15.11547 -14.80350 -14.46048 -14.37333 -14.02081 -13.58269 -13.18358 -12.77756 -12.52057 -12.45776 -11.88528 -11.75032 -11.54841 -11.21075 -11.07562 -10.96859 -10.78995 -10.76364 -10.69174 -10.22940 -10.05716 -10.00528 -9.92804 -9.62804 -9.31798 -8.66085 -8.54430 -6.83235 -5.67857 -3.05632 0.87304 1.13008 3.15339 3.42020 3.43930 3.47203 3.49877 3.73244 4.02673 4.41095 4.51791 4.56883 4.65323 4.77376 4.88983 4.94604 5.21271 5.26984 5.35078 5.42610 5.51210 5.54302 5.69672 5.74815 5.77487 5.82098 5.85562 5.94830 6.08602 6.21302 6.30096 6.43323 6.58885 6.82659 7.26013 7.52655 7.71344 7.85764 8.26514 8.88532 9.20157 9.82332 10.46722 11.41407 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.004170 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.681032 B = 6712.642387 C = 7410.620513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.603 5.603 10 C 0.135 3.865 11 C -0.126 4.126 12 C 0.058 3.942 13 H 0.088 0.912 14 O -0.287 6.287 15 C 0.276 3.724 16 C -0.138 4.138 17 C -0.086 4.086 18 C 0.052 3.948 19 C -0.095 4.095 20 C -0.174 4.174 21 C -0.163 4.163 22 N -0.196 5.196 23 N -0.288 5.288 24 C 0.163 3.837 25 H 0.252 0.748 26 H 0.024 0.976 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.541 -12.694 -2.726 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.205 1.205 6 H -0.216 1.216 7 C -0.359 4.359 8 H 0.098 0.902 9 N -0.330 5.330 10 C 0.009 3.991 11 C -0.165 4.165 12 C 0.001 3.999 13 H 0.106 0.894 14 O -0.190 6.190 15 C 0.091 3.909 16 C -0.168 4.168 17 C -0.114 4.114 18 C -0.095 4.095 19 C -0.115 4.115 20 C -0.212 4.212 21 C -0.200 4.200 22 N -0.040 5.040 23 N -0.144 5.144 24 C 0.037 3.963 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.173 0.827 31 H 0.169 0.831 32 H 0.142 0.858 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.434 -12.146 -3.607 17.752 hybrid contribution -0.449 0.702 1.097 1.378 sum -12.883 -11.444 -2.510 17.414 Atomic orbital electron populations 1.69952 1.05010 1.25072 1.56523 1.24839 0.95651 0.97841 1.02076 0.86092 0.78698 0.83475 0.77450 1.21621 1.20549 1.21618 1.19057 0.90919 0.82440 1.43479 0.90168 1.44338 1.04627 1.00212 1.83846 1.21621 0.93844 0.85690 0.97948 1.22930 0.94643 0.98243 1.00666 1.24004 0.78394 1.00511 0.96966 0.89427 1.86263 1.14725 1.83240 1.34737 1.21543 0.88661 0.90746 0.89922 1.21544 0.89957 1.02781 1.02480 1.22058 1.00016 0.96430 0.92918 1.21741 0.94234 1.00497 0.93063 1.20559 0.91668 0.98826 1.00407 1.23099 0.94012 1.03879 1.00171 1.22991 1.02782 0.95456 0.98794 1.72679 0.96127 1.07377 1.27781 1.73189 1.23667 1.16169 1.01366 1.21539 0.86237 0.87347 1.01143 0.93739 0.95810 0.93396 0.90436 0.91432 0.82743 0.83054 0.85752 0.88385 0.87898 0.88013 0.88697 0.91145 0.94243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.07 10.45 55.49 0.58 -27.49 16 2 C -0.01 -0.22 5.45 -17.43 -0.10 -0.31 16 3 Si 0.91 22.63 29.56 -169.99 -5.02 17.61 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.23 -6.63 10.26 -15.06 -0.15 -6.78 16 8 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 9 N -0.60 -16.07 3.39 -169.94 -0.58 -16.65 16 10 C 0.14 2.86 7.24 -2.41 -0.02 2.84 16 11 C -0.13 -2.34 6.83 -24.46 -0.17 -2.50 16 12 C 0.06 1.20 3.15 -24.89 -0.08 1.12 16 13 H 0.09 1.81 7.15 -51.93 -0.37 1.44 16 14 O -0.29 -5.62 9.87 -18.79 -0.19 -5.80 16 15 C 0.28 5.00 7.57 -16.95 -0.13 4.87 16 16 C -0.14 -1.90 10.16 -39.05 -0.40 -2.29 16 17 C -0.09 -1.01 9.44 -39.24 -0.37 -1.38 16 18 C 0.05 0.71 6.54 -82.41 -0.54 0.17 16 19 C -0.09 -0.97 6.23 -91.77 -0.57 -1.54 16 20 C -0.17 -1.23 9.82 -26.70 -0.26 -1.49 16 21 C -0.16 -1.33 10.24 -26.70 -0.27 -1.60 16 22 N -0.20 -3.47 11.42 33.61 0.38 -3.09 16 23 N -0.29 -5.64 9.90 30.50 0.30 -5.34 16 24 C 0.16 4.23 5.22 -3.06 -0.02 4.21 16 25 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.15 1.16 6.36 -52.48 -0.33 0.83 16 32 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.10 0.60 6.43 -51.93 -0.33 0.26 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.07 2.06 6.80 -51.93 -0.35 1.71 16 38 H 0.04 1.15 7.97 -51.93 -0.41 0.73 16 LS Contribution 318.10 15.07 4.79 4.79 Total: -1.00 -33.57 318.10 -7.95 -41.53 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.16 Total: -0.89 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -3.07 Total: -4.67 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.69 Total: -52.57 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.19 Total: -5.80 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.57 -7.95 -41.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231026078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.338 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds