Wall clock time and date at job start Mon Mar 30 2020 02:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99873 * 2 1 4 4 H 1.48497 * 109.47422 * 85.00932 * 3 2 1 5 5 H 1.48499 * 109.46986 * 205.00760 * 3 2 1 6 6 H 1.48502 * 109.47269 * 325.00652 * 3 2 1 7 7 C 1.38809 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00189 * 187.32952 * 7 2 1 9 9 N 1.36936 * 120.00090 * 7.33747 * 7 2 1 10 10 C 1.47425 * 125.64977 * 185.52815 * 9 7 2 11 11 C 1.55124 * 104.72444 * 155.81615 * 10 9 7 12 12 C 1.55160 * 101.48722 * 37.29072 * 11 10 9 13 13 H 1.08998 * 110.71894 * 82.69997 * 12 11 10 14 14 O 1.42903 * 110.87199 * 205.90541 * 12 11 10 15 15 C 1.35696 * 116.99969 * 205.06738 * 14 12 11 16 16 C 1.39266 * 120.13990 * 179.72114 * 15 14 12 17 17 C 1.38637 * 117.91443 * 179.73463 * 16 15 14 18 18 C 1.38761 * 118.02798 * 0.52469 * 17 16 15 19 19 C 1.50695 * 120.02098 * 179.74998 * 18 17 16 20 20 C 1.53004 * 117.49450 * 343.72493 * 19 18 17 21 21 C 1.52997 * 117.49779 * 275.07214 * 19 18 17 22 22 N 1.31820 * 119.96647 * 359.73255 * 18 17 16 23 23 N 1.28346 * 122.26502 * 359.97438 * 22 18 17 24 24 C 1.47019 * 125.64551 * 5.82617 * 9 7 2 25 25 H 0.97002 * 120.00013 * 0.02562 * 1 2 3 26 26 H 1.09007 * 110.36357 * 274.73816 * 10 9 7 27 27 H 1.08993 * 110.36752 * 37.06556 * 10 9 7 28 28 H 1.09004 * 111.19034 * 279.18732 * 11 10 9 29 29 H 1.09001 * 110.94455 * 155.28780 * 11 10 9 30 30 H 1.07994 * 121.03831 * 359.97179 * 16 15 14 31 31 H 1.08007 * 120.98879 * 180.23078 * 17 16 15 32 32 H 1.08995 * 115.55264 * 129.39634 * 19 18 17 33 33 H 1.08999 * 117.50303 * 0.02562 * 20 19 18 34 34 H 1.09005 * 117.49454 * 145.01799 * 20 19 18 35 35 H 1.09003 * 117.49779 * 214.97855 * 21 19 18 36 36 H 1.09008 * 117.50042 * 359.96914 * 21 19 18 37 37 H 1.08997 * 109.88756 * 300.44606 * 24 9 7 38 38 H 1.09007 * 109.88075 * 61.45565 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 1.3947 5 1 3.5964 1.4120 -0.5919 6 1 1.5043 2.6200 -0.8029 7 6 2.0102 -1.2021 0.0005 8 1 3.0836 -1.2059 0.1199 9 7 1.3340 -2.3832 -0.1504 10 6 1.9254 -3.7302 -0.0542 11 6 0.7394 -4.6554 0.3248 12 6 -0.4173 -4.0274 -0.4969 13 1 -0.3994 -4.3876 -1.5255 14 8 -1.6811 -4.3016 0.1111 15 6 -2.7690 -4.2959 -0.6999 16 6 -4.0324 -4.5607 -0.1770 17 6 -5.1124 -4.5374 -1.0460 18 6 -4.8670 -4.2629 -2.3839 19 6 -6.0073 -4.2319 -3.3686 20 6 -7.3294 -4.8707 -2.9387 21 6 -6.4480 -5.5628 -3.9813 22 7 -3.6359 -4.0290 -2.7930 23 7 -2.6333 -4.0437 -1.9920 24 6 -0.1008 -2.5180 -0.4413 25 1 -0.4850 0.8401 -0.0004 26 1 2.3499 -4.0275 -1.0132 27 1 2.6887 -3.7548 0.7235 28 1 0.5294 -4.6091 1.3934 29 1 0.9297 -5.6816 0.0103 30 1 -4.1669 -4.7736 0.8731 31 1 -6.1144 -4.7319 -0.6930 32 1 -6.0587 -3.3454 -4.0006 33 1 -7.3746 -5.3130 -1.9435 34 1 -8.2507 -4.4045 -3.2882 35 1 -6.7896 -5.5518 -5.0163 36 1 -5.9128 -6.4608 -3.6724 37 1 -0.6851 -2.0455 0.3483 38 1 -0.3298 -2.0533 -1.4004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231026078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:43 Heat of formation + Delta-G solvation = 56.234884 kcal Electronic energy + Delta-G solvation = -20805.589110 eV Core-core repulsion = 17650.013526 eV Total energy + Delta-G solvation = -3155.575584 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.33257 -40.28974 -38.40274 -37.70154 -34.51165 -33.99867 -32.34829 -30.90499 -29.30131 -26.77035 -26.03397 -25.48754 -23.17529 -22.35765 -22.09237 -21.98999 -19.61398 -19.01773 -18.56829 -17.52088 -17.28274 -16.65033 -16.15649 -15.90747 -15.70171 -15.39161 -14.73593 -14.52764 -14.45661 -14.37782 -13.67209 -13.50077 -13.32322 -13.00715 -12.71399 -12.60884 -12.30297 -12.21189 -12.04569 -11.99858 -11.83568 -11.65152 -11.52037 -11.43924 -11.06284 -10.81258 -10.49996 -9.90692 -8.98735 -7.88234 -5.29491 -0.22518 -0.02793 1.42323 1.45572 1.55046 1.79948 2.42426 2.46358 2.79032 3.07536 3.26124 3.30092 3.59914 3.65805 3.73047 3.86889 3.92543 3.93527 4.04556 4.15778 4.19441 4.29246 4.51313 4.57191 4.61797 4.82262 4.83886 4.91385 4.92083 5.03254 5.10593 5.22719 5.23192 5.29578 5.30911 5.43233 5.59921 6.08865 6.13649 6.99785 7.67337 7.69058 8.33177 9.19915 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.004170 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.681032 B = 6712.642387 C = 7410.620513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.984 3.016 4 H -0.282 1.282 5 H -0.264 1.264 6 H -0.297 1.297 7 C -0.245 4.245 8 H 0.092 0.908 9 N -0.626 5.626 10 C 0.127 3.873 11 C -0.109 4.109 12 C 0.074 3.926 13 H 0.085 0.915 14 O -0.294 6.294 15 C 0.242 3.758 16 C -0.132 4.132 17 C -0.070 4.070 18 C 0.060 3.940 19 C -0.127 4.127 20 C -0.144 4.144 21 C -0.161 4.161 22 N -0.244 5.244 23 N -0.332 5.332 24 C 0.179 3.821 25 H 0.245 0.755 26 H 0.037 0.963 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.187 0.813 31 H 0.204 0.796 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.029 0.971 38 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.999 -14.402 -2.021 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.811 3.189 4 H -0.209 1.209 5 H -0.188 1.188 6 H -0.224 1.224 7 C -0.373 4.373 8 H 0.110 0.890 9 N -0.354 5.354 10 C 0.003 3.997 11 C -0.147 4.147 12 C 0.017 3.983 13 H 0.103 0.897 14 O -0.198 6.198 15 C 0.056 3.944 16 C -0.161 4.161 17 C -0.098 4.098 18 C -0.088 4.088 19 C -0.147 4.147 20 C -0.181 4.181 21 C -0.198 4.198 22 N -0.085 5.085 23 N -0.187 5.187 24 C 0.053 3.947 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.130 0.870 30 H 0.204 0.796 31 H 0.221 0.779 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.108 0.892 37 H 0.047 0.953 38 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges -13.862 -13.891 -2.923 19.841 hybrid contribution -0.149 1.182 0.794 1.432 sum -14.011 -12.709 -2.129 19.036 Atomic orbital electron populations 1.70223 1.06758 1.25236 1.58033 1.25795 0.96521 1.01599 1.02406 0.84987 0.77811 0.78611 0.77480 1.20863 1.18818 1.22363 1.19552 0.91723 0.83624 1.42440 0.89031 1.44682 1.05079 1.01946 1.83692 1.21892 0.95187 0.83591 0.99070 1.22894 0.91779 0.99613 1.00411 1.23597 0.80310 0.96662 0.97757 0.89747 1.86229 1.14594 1.83935 1.35004 1.21977 0.89606 0.92800 0.90032 1.21998 0.88440 1.01320 1.04344 1.22624 1.01633 0.94009 0.91508 1.22435 0.93725 0.97651 0.95019 1.20664 0.92603 1.00066 1.01350 1.23294 0.92797 1.01386 1.00634 1.23083 1.02757 0.93819 1.00180 1.72582 0.97586 1.10028 1.28346 1.73022 1.25493 1.17682 1.02473 1.21115 0.85945 0.90777 0.96832 0.94589 0.94506 0.91889 0.90159 0.87043 0.79562 0.77925 0.86258 0.86583 0.85816 0.86735 0.89205 0.95286 0.99265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.37 10.45 21.65 0.23 -61.15 16 2 C -0.07 -4.23 5.45 84.86 0.46 -3.76 16 3 Si 0.98 47.65 29.56 68.60 2.03 49.67 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 7 C -0.24 -14.35 10.26 84.03 0.86 -13.48 16 8 H 0.09 5.00 7.84 -2.91 -0.02 4.98 16 9 N -0.63 -34.37 3.39 -691.56 -2.35 -36.71 16 10 C 0.13 5.30 7.24 86.93 0.63 5.93 16 11 C -0.11 -3.89 6.83 32.06 0.22 -3.67 16 12 C 0.07 3.17 3.15 31.78 0.10 3.27 16 13 H 0.08 3.65 7.15 -2.39 -0.02 3.63 16 14 O -0.29 -11.79 9.87 -90.15 -0.89 -12.68 16 15 C 0.24 8.98 7.57 84.86 0.64 9.62 16 16 C -0.13 -3.44 10.16 22.61 0.23 -3.21 16 17 C -0.07 -1.46 9.44 22.49 0.21 -1.24 16 18 C 0.06 1.60 6.54 42.68 0.28 1.88 16 19 C -0.13 -2.37 6.23 -11.54 -0.07 -2.44 16 20 C -0.14 -1.44 9.82 30.62 0.30 -1.14 16 21 C -0.16 -2.22 10.24 30.61 0.31 -1.91 16 22 N -0.24 -9.00 11.42 -47.59 -0.54 -9.54 16 23 N -0.33 -13.76 9.90 -170.22 -1.69 -15.45 16 24 C 0.18 9.91 5.22 86.73 0.45 10.36 16 25 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 26 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.08 2.83 8.14 -2.38 -0.02 2.82 16 29 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.19 3.52 8.06 -2.91 -0.02 3.49 16 31 H 0.20 2.02 6.36 -2.91 -0.02 2.00 16 32 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.12 0.76 6.43 -2.39 -0.02 0.74 16 34 H 0.12 0.79 8.14 -2.38 -0.02 0.78 16 35 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.03 1.82 6.80 -2.39 -0.02 1.81 16 38 H -0.01 -0.69 7.97 -2.38 -0.02 -0.71 16 Total: -1.00 -79.90 318.10 2.48 -77.42 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.06 Total: 8.23 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 4.63 Total: 0.21 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -4.35 Total: -122.85 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.89 Total: -12.68 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.67 kcal Total: -79.90 2.48 -77.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231026078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.654 kcal (2) G-P(sol) polarization free energy of solvation -79.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds