Wall clock time and date at job start Mon Mar 30 2020 02:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42895 * 114.17025 * 139.67367 * 12 11 10 14 14 C 1.35693 * 117.00501 * 116.15494 * 13 12 11 15 15 C 1.39267 * 120.14463 * 179.72766 * 14 13 12 16 16 C 1.38639 * 117.92119 * 179.73847 * 15 14 13 17 17 C 1.38763 * 118.01735 * 0.52547 * 16 15 14 18 18 C 1.50705 * 120.00884 * 179.75105 * 17 16 15 19 19 C 1.52994 * 117.49944 * 343.59655 * 18 17 16 20 20 C 1.52995 * 117.49715 * 274.97147 * 18 17 16 21 21 N 1.31808 * 119.97772 * 359.72517 * 17 16 15 22 22 N 1.28350 * 122.26098 * 0.02562 * 21 17 16 23 23 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 26 26 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 27 27 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 28 28 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 29 29 H 1.09011 * 114.34125 * 272.36207 * 12 11 10 30 30 H 1.08004 * 121.03374 * 359.96727 * 15 14 13 31 31 H 1.07999 * 120.98935 * 180.27120 * 16 15 14 32 32 H 1.09001 * 115.54841 * 129.30808 * 18 17 16 33 33 H 1.08992 * 117.50207 * 0.02562 * 19 18 17 34 34 H 1.09006 * 117.49546 * 145.02432 * 19 18 17 35 35 H 1.08999 * 117.50184 * 214.98029 * 20 18 17 36 36 H 1.08992 * 117.50364 * 359.97438 * 20 18 17 37 37 H 1.09000 * 113.47556 * 253.46531 * 23 10 9 38 38 H 1.08997 * 113.47949 * 23.93922 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 1.7491 -6.4380 -1.7035 14 6 2.4915 -7.4485 -2.2221 15 6 1.9034 -8.3856 -3.0680 16 6 2.7059 -9.3955 -3.5760 17 6 4.0420 -9.4168 -3.2018 18 6 4.9535 -10.4978 -3.7231 19 6 4.3002 -11.7404 -4.3313 20 6 4.9809 -11.8257 -2.9637 21 7 4.5136 -8.4910 -2.3909 22 7 3.7763 -7.5511 -1.9216 23 6 1.5184 -4.8986 0.2386 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6240 -2.5568 -0.8903 27 1 1.6756 -3.8466 -2.0765 28 1 3.4598 -3.7930 -1.7440 29 1 3.3701 -5.8955 -0.4633 30 1 0.8556 -8.3252 -3.3232 31 1 2.3023 -10.1457 -4.2398 32 1 5.8875 -10.1521 -4.1660 33 1 3.2111 -11.7759 -4.3548 34 1 4.8043 -12.2123 -5.1747 35 1 5.9327 -12.3539 -2.9073 36 1 4.3400 -11.9174 -2.0869 37 1 1.6915 -5.3047 1.2352 38 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231028866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:41 Heat of formation + Delta-G solvation = 91.834054 kcal Electronic energy + Delta-G solvation = -20039.621232 eV Core-core repulsion = 16885.589343 eV Total energy + Delta-G solvation = -3154.031889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.43875 -39.80092 -37.96524 -36.97520 -33.27880 -32.87029 -31.40859 -29.26714 -25.84040 -25.44339 -25.20412 -24.44650 -22.72326 -21.74201 -21.47718 -19.64806 -18.65462 -17.60299 -16.91555 -16.36480 -15.97048 -15.30736 -15.23348 -14.85960 -14.47916 -14.24390 -14.15413 -13.76993 -13.02635 -12.75603 -12.52283 -12.19009 -12.07609 -11.92597 -11.49377 -11.37470 -11.15718 -10.95672 -10.94085 -10.64155 -10.50117 -10.27842 -10.09897 -9.81454 -9.63479 -9.26803 -8.89432 -8.45207 -8.00668 -6.05053 -4.06490 0.58084 0.82516 2.83236 3.18654 3.34329 3.37412 3.41454 3.46217 3.78078 4.11371 4.34362 4.41934 4.45266 4.53305 4.65295 4.70474 4.72609 4.84890 4.96612 5.18145 5.30242 5.31096 5.38394 5.49317 5.55176 5.63374 5.68609 5.80356 5.94671 5.98623 6.08926 6.22785 6.30070 6.51815 7.11445 7.20407 7.59373 7.80790 8.05252 8.40385 8.56857 9.00534 9.57567 11.06058 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.048790 B = 0.002830 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.753971 B = 9892.283367 C =10093.421613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.064 0.936 9 C 0.161 3.839 10 N -0.457 5.457 11 C 0.001 3.999 12 C 0.045 3.955 13 O -0.286 6.286 14 C 0.270 3.730 15 C -0.136 4.136 16 C -0.084 4.084 17 C 0.057 3.943 18 C -0.098 4.098 19 C -0.173 4.173 20 C -0.161 4.161 21 N -0.196 5.196 22 N -0.294 5.294 23 C 0.000 4.000 24 H 0.262 0.738 25 H 0.032 0.968 26 H 0.006 0.994 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.127 0.873 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.814 -24.166 -9.115 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.729 3.271 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.036 3.964 10 N -0.182 5.182 11 C -0.128 4.128 12 C -0.011 4.011 13 O -0.189 6.189 14 C 0.085 3.915 15 C -0.166 4.166 16 C -0.112 4.112 17 C -0.090 4.090 18 C -0.118 4.118 19 C -0.211 4.211 20 C -0.199 4.199 21 N -0.040 5.040 22 N -0.150 5.150 23 C -0.130 4.130 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.024 0.976 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.144 0.856 30 H 0.175 0.825 31 H 0.172 0.828 32 H 0.143 0.857 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.121 -22.990 -7.823 25.044 hybrid contribution -1.561 0.396 -1.223 2.022 sum 4.560 -22.593 -9.046 24.760 Atomic orbital electron populations 1.69948 1.06087 1.27003 1.50937 1.25011 0.94918 0.99445 0.95335 0.86501 0.79394 0.82433 0.78754 1.21325 1.20068 1.20217 1.21053 0.93647 0.89635 1.50189 0.91766 1.20293 0.90494 0.88726 0.96933 1.69048 1.33685 1.01321 1.14142 1.24240 1.02941 0.91203 0.94438 1.24692 0.98254 0.87022 0.91123 1.86372 1.36582 1.35574 1.60362 1.21579 0.90256 0.88721 0.90926 1.21602 1.02740 0.94155 0.98078 1.22123 0.93380 0.97739 0.97975 1.21787 0.92959 0.96959 0.97310 1.20581 1.00008 0.86566 1.04656 1.23103 1.00548 1.00043 0.97391 1.22996 1.03079 0.98223 0.95608 1.72678 1.28077 0.97813 1.05385 1.73101 1.03111 1.17036 1.21775 1.24129 0.97855 0.92897 0.98082 0.92806 0.95014 0.97620 0.90902 0.89756 0.85566 0.82537 0.82816 0.85653 0.88340 0.87776 0.87869 0.88609 0.89596 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.67 9.39 -34.44 -0.32 -14.99 16 8 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.16 4.28 4.57 -4.98 -0.02 4.26 16 10 N -0.46 -10.27 6.32 -246.08 -1.55 -11.82 16 11 C 0.00 0.02 7.55 -7.54 -0.06 -0.04 16 12 C 0.05 0.78 4.54 -26.20 -0.12 0.66 16 13 O -0.29 -4.58 10.18 -18.78 -0.19 -4.77 16 14 C 0.27 3.91 7.57 -16.95 -0.13 3.78 16 15 C -0.14 -1.45 10.16 -39.05 -0.40 -1.85 16 16 C -0.08 -0.75 9.44 -39.24 -0.37 -1.12 16 17 C 0.06 0.61 6.54 -82.41 -0.54 0.07 16 18 C -0.10 -0.76 6.23 -91.78 -0.57 -1.33 16 19 C -0.17 -0.88 9.82 -26.73 -0.26 -1.14 16 20 C -0.16 -1.02 10.23 -26.73 -0.27 -1.29 16 21 N -0.20 -2.81 11.42 33.61 0.38 -2.43 16 22 N -0.29 -4.63 9.78 30.50 0.30 -4.33 16 23 C 0.00 -0.01 7.52 -7.53 -0.06 -0.06 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.89 8.08 -51.92 -0.42 0.47 16 26 H 0.01 0.17 7.30 -51.93 -0.38 -0.21 16 27 H 0.07 1.48 7.42 -51.93 -0.39 1.10 16 28 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 29 H 0.13 2.17 6.89 -51.92 -0.36 1.81 16 30 H 0.16 1.28 8.06 -52.48 -0.42 0.85 16 31 H 0.15 0.80 6.36 -52.49 -0.33 0.46 16 32 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 0.41 6.44 -51.93 -0.33 0.07 16 34 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 LS Contribution 324.29 15.07 4.89 4.89 Total: -1.00 -32.45 324.29 -8.80 -41.25 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -5.12 Total: -1.95 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -3.22 Total: -11.58 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.14 Total: -44.87 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.19 Total: -4.77 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.45 -8.80 -41.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231028866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.085 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds