Wall clock time and date at job start Mon Mar 30 2020 02:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42895 * 114.17025 * 139.67367 * 12 11 10 14 14 C 1.35693 * 117.00501 * 116.15494 * 13 12 11 15 15 C 1.39267 * 120.14463 * 179.72766 * 14 13 12 16 16 C 1.38639 * 117.92119 * 179.73847 * 15 14 13 17 17 C 1.38763 * 118.01735 * 0.52547 * 16 15 14 18 18 C 1.50705 * 120.00884 * 179.75105 * 17 16 15 19 19 C 1.52994 * 117.49944 * 343.59655 * 18 17 16 20 20 C 1.52995 * 117.49715 * 274.97147 * 18 17 16 21 21 N 1.31808 * 119.97772 * 359.72517 * 17 16 15 22 22 N 1.28350 * 122.26098 * 0.02562 * 21 17 16 23 23 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 26 26 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 27 27 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 28 28 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 29 29 H 1.09011 * 114.34125 * 272.36207 * 12 11 10 30 30 H 1.08004 * 121.03374 * 359.96727 * 15 14 13 31 31 H 1.07999 * 120.98935 * 180.27120 * 16 15 14 32 32 H 1.09001 * 115.54841 * 129.30808 * 18 17 16 33 33 H 1.08992 * 117.50207 * 0.02562 * 19 18 17 34 34 H 1.09006 * 117.49546 * 145.02432 * 19 18 17 35 35 H 1.08999 * 117.50184 * 214.98029 * 20 18 17 36 36 H 1.08992 * 117.50364 * 359.97438 * 20 18 17 37 37 H 1.09000 * 113.47556 * 253.46531 * 23 10 9 38 38 H 1.08997 * 113.47949 * 23.93922 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 1.7491 -6.4380 -1.7035 14 6 2.4915 -7.4485 -2.2221 15 6 1.9034 -8.3856 -3.0680 16 6 2.7059 -9.3955 -3.5760 17 6 4.0420 -9.4168 -3.2018 18 6 4.9535 -10.4978 -3.7231 19 6 4.3002 -11.7404 -4.3313 20 6 4.9809 -11.8257 -2.9637 21 7 4.5136 -8.4910 -2.3909 22 7 3.7763 -7.5511 -1.9216 23 6 1.5184 -4.8986 0.2386 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6240 -2.5568 -0.8903 27 1 1.6756 -3.8466 -2.0765 28 1 3.4598 -3.7930 -1.7440 29 1 3.3701 -5.8955 -0.4633 30 1 0.8556 -8.3252 -3.3232 31 1 2.3023 -10.1457 -4.2398 32 1 5.8875 -10.1521 -4.1660 33 1 3.2111 -11.7759 -4.3548 34 1 4.8043 -12.2123 -5.1747 35 1 5.9327 -12.3539 -2.9073 36 1 4.3400 -11.9174 -2.0869 37 1 1.6915 -5.3047 1.2352 38 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231028866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:40 Heat of formation + Delta-G solvation = 67.361286 kcal Electronic energy + Delta-G solvation = -20040.682451 eV Core-core repulsion = 16885.589343 eV Total energy + Delta-G solvation = -3155.093107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.42168 -41.22985 -39.00787 -37.85933 -35.08297 -34.09645 -32.41033 -31.13246 -27.54391 -26.99802 -26.07579 -25.69154 -23.63173 -23.03235 -22.22416 -21.17695 -19.88331 -18.68328 -18.44341 -17.56982 -17.12892 -16.95089 -16.39878 -15.97267 -15.95259 -15.46675 -15.34641 -14.59408 -14.43966 -14.24022 -13.99269 -13.78637 -13.50503 -13.20481 -12.89008 -12.52294 -12.31095 -12.27924 -12.22138 -11.91751 -11.77507 -11.57513 -11.44848 -11.31277 -11.08375 -10.65031 -10.55106 -9.95432 -9.84333 -8.26425 -6.37086 -0.26367 -0.08211 1.38527 1.42188 1.50337 1.69300 2.36688 2.37770 2.74357 3.04132 3.05729 3.16993 3.24554 3.28423 3.62633 3.77233 3.91258 3.95023 4.04412 4.14360 4.15436 4.35412 4.37569 4.52014 4.55788 4.59977 4.71238 4.78990 4.82473 4.89019 4.98813 5.04620 5.13977 5.22142 5.29126 5.49566 5.67740 5.97060 5.99189 6.32288 6.75780 7.32235 7.61833 8.84776 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.048790 B = 0.002830 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.753971 B = 9892.283367 C =10093.421613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.973 3.027 4 H -0.279 1.279 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.177 3.823 10 N -0.476 5.476 11 C -0.002 4.002 12 C 0.075 3.925 13 O -0.293 6.293 14 C 0.242 3.758 15 C -0.130 4.130 16 C -0.069 4.069 17 C 0.064 3.936 18 C -0.123 4.123 19 C -0.147 4.147 20 C -0.165 4.165 21 N -0.238 5.238 22 N -0.329 5.329 23 C 0.001 3.999 24 H 0.267 0.733 25 H 0.009 0.991 26 H -0.016 1.016 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.185 0.815 31 H 0.201 0.799 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.111 -26.135 -10.611 28.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.050 3.950 10 N -0.200 5.200 11 C -0.132 4.132 12 C 0.017 3.983 13 O -0.196 6.196 14 C 0.056 3.944 15 C -0.159 4.159 16 C -0.097 4.097 17 C -0.085 4.085 18 C -0.143 4.143 19 C -0.184 4.184 20 C -0.203 4.203 21 N -0.080 5.080 22 N -0.184 5.184 23 C -0.128 4.128 24 H 0.076 0.924 25 H 0.027 0.973 26 H 0.002 0.998 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.145 0.855 30 H 0.202 0.798 31 H 0.218 0.782 32 H 0.143 0.857 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.446 -24.986 -9.318 27.435 hybrid contribution -1.622 0.793 -0.849 1.996 sum 4.823 -24.193 -10.167 26.682 Atomic orbital electron populations 1.70063 1.07642 1.28214 1.51303 1.25942 0.95857 1.03281 0.94494 0.85390 0.78178 0.77643 0.79143 1.20358 1.19267 1.19352 1.21373 0.93617 0.91138 1.50817 0.92307 1.19953 0.90445 0.89922 0.94669 1.68926 1.33162 1.01859 1.16024 1.24231 1.02465 0.93342 0.93123 1.24139 0.97800 0.86111 0.90200 1.86326 1.36608 1.36114 1.60600 1.21907 0.90499 0.89416 0.92616 1.21996 1.04232 0.93150 0.96569 1.22626 0.92205 0.97613 0.97214 1.22390 0.94480 0.96197 0.95384 1.20686 1.00321 0.86635 1.06667 1.23278 1.01509 0.96662 0.96931 1.23073 1.03914 0.96954 0.96344 1.72600 1.28745 0.99080 1.07549 1.72954 1.03919 1.18367 1.23120 1.24154 0.97857 0.91014 0.99755 0.92437 0.97333 0.99817 0.91788 0.89789 0.85472 0.79782 0.78216 0.85746 0.86736 0.85875 0.86823 0.89389 0.87752 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 2 C 0.00 0.15 5.46 84.66 0.46 0.62 16 3 Si 0.97 45.43 29.54 68.60 2.03 47.45 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.53 -31.54 9.39 25.60 0.24 -31.30 16 8 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 9 C 0.18 9.78 4.57 85.55 0.39 10.17 16 10 N -0.48 -22.04 6.32 -932.85 -5.89 -27.93 16 11 C 0.00 -0.09 7.55 83.58 0.63 0.54 16 12 C 0.07 2.62 4.54 30.94 0.14 2.76 16 13 O -0.29 -9.39 10.18 -90.12 -0.92 -10.31 16 14 C 0.24 6.89 7.57 84.86 0.64 7.54 16 15 C -0.13 -2.50 10.16 22.61 0.23 -2.27 16 16 C -0.07 -1.00 9.44 22.49 0.21 -0.79 16 17 C 0.06 1.26 6.54 42.69 0.28 1.54 16 18 C -0.12 -1.63 6.23 -11.54 -0.07 -1.70 16 19 C -0.15 -0.88 9.82 30.59 0.30 -0.58 16 20 C -0.17 -1.67 10.23 30.59 0.31 -1.35 16 21 N -0.24 -6.82 11.42 -47.59 -0.54 -7.36 16 22 N -0.33 -10.51 9.78 -170.22 -1.66 -12.18 16 23 C 0.00 0.04 7.52 83.58 0.63 0.67 16 24 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 25 H 0.01 0.50 8.08 -2.38 -0.02 0.48 16 26 H -0.02 -0.93 7.30 -2.39 -0.02 -0.95 16 27 H 0.06 2.72 7.42 -2.39 -0.02 2.71 16 28 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 29 H 0.13 4.47 6.89 -2.38 -0.02 4.46 16 30 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.20 0.97 6.36 -2.91 -0.02 0.96 16 32 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.11 0.33 6.44 -2.39 -0.02 0.32 16 34 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 35 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 38 H 0.07 2.69 7.91 -2.39 -0.02 2.67 16 Total: -1.00 -72.85 324.29 -1.24 -74.09 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.06 Total: 7.02 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 4.40 Total: -14.16 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -7.81 Total: -104.09 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.92 Total: -10.31 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -72.85 -1.24 -74.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231028866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.454 kcal (2) G-P(sol) polarization free energy of solvation -72.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds