Wall clock time and date at job start Mon Mar 30 2020 01:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00235 * 2 1 4 4 O 1.20826 * 119.99713 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00313 * 180.02562 * 3 2 1 6 6 H 1.09002 * 112.75018 * 49.22455 * 5 3 2 7 7 C 1.53512 * 113.47646 * 278.37535 * 5 3 2 8 8 C 1.53506 * 83.57774 * 219.20999 * 7 5 3 9 9 N 1.47481 * 87.93373 * 26.02492 * 8 7 5 10 10 C 1.46903 * 111.00010 * 221.29785 * 9 8 7 11 11 C 1.50702 * 109.46945 * 260.69062 * 10 9 8 12 12 C 1.37639 * 120.12475 * 254.98413 * 11 10 9 13 13 C 1.38613 * 120.24794 * 180.02562 * 12 11 10 14 14 C 1.38654 * 120.50073 * 359.97438 * 13 12 11 15 15 C 1.37602 * 120.25004 * 0.02562 * 14 13 12 16 16 C 1.40693 * 120.12803 * 75.00963 * 11 10 9 17 17 C 1.41397 * 120.24747 * 359.97438 * 16 11 10 18 18 H 1.07998 * 119.99788 * 43.49516 * 17 16 11 19 19 C 1.39947 * 120.00102 * 223.49713 * 17 16 11 20 20 N 1.30818 * 119.99708 * 204.64975 * 19 17 16 21 21 Si 1.86803 * 119.99932 * 24.65048 * 19 17 16 22 22 H 1.48497 * 109.46888 * 91.12275 * 21 19 17 23 23 H 1.48496 * 109.46648 * 211.12036 * 21 19 17 24 24 H 1.48499 * 109.47178 * 331.12241 * 21 19 17 25 25 H 1.09001 * 109.46787 * 300.00284 * 1 2 3 26 26 H 1.09001 * 109.46664 * 60.00311 * 1 2 3 27 27 H 1.09004 * 109.46873 * 180.02562 * 1 2 3 28 28 H 1.09007 * 114.16869 * 332.85930 * 7 5 3 29 29 H 1.08997 * 114.16952 * 105.55963 * 7 5 3 30 30 H 1.09005 * 113.47741 * 271.25687 * 8 7 5 31 31 H 1.09002 * 113.47880 * 140.78900 * 8 7 5 32 32 H 1.09001 * 109.46957 * 140.68806 * 10 9 8 33 33 H 1.09005 * 109.46894 * 20.68670 * 10 9 8 34 34 H 1.08000 * 119.87640 * 0.02562 * 12 11 10 35 35 H 1.07991 * 119.74819 * 180.02562 * 13 12 11 36 36 H 1.07995 * 119.87804 * 180.28280 * 14 13 12 37 37 H 1.07994 * 120.12859 * 179.97438 * 15 14 13 38 38 H 0.96998 * 120.00035 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0213 0.6415 -0.7621 7 6 4.1883 1.1018 1.3922 8 6 5.1477 2.1992 0.9108 9 7 4.0822 2.6565 -0.0006 10 6 4.6315 3.0134 -1.3155 11 6 4.7999 4.5085 -1.4006 12 6 3.9208 5.2614 -2.1455 13 6 4.0736 6.6368 -2.2259 14 6 5.1109 7.2698 -1.5582 15 6 6.0015 6.5372 -0.8076 16 6 5.8565 5.1401 -0.7192 17 6 6.7656 4.3769 0.0491 18 1 7.1539 3.4473 -0.3400 19 6 7.1623 4.8262 1.3137 20 7 8.3050 4.4366 1.8175 21 14 6.0600 5.9822 2.2824 22 1 5.1515 5.1895 3.1491 23 1 6.8968 6.8729 3.1260 24 1 5.2557 6.8032 1.3420 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.5379 1.4058 2.2124 29 1 4.6622 0.1333 1.5521 30 1 6.0255 1.8122 0.3932 31 1 5.3995 2.9255 1.6836 32 1 3.9490 2.6795 -2.0971 33 1 5.5998 2.5306 -1.4480 34 1 3.1090 4.7788 -2.6693 35 1 3.3790 7.2197 -2.8124 36 1 5.2178 8.3425 -1.6241 37 1 6.8089 7.0322 -0.2887 38 1 8.5798 4.7476 2.6942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235514315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:57 Heat of formation + Delta-G solvation = -19.134017 kcal Electronic energy + Delta-G solvation = -21657.649927 eV Core-core repulsion = 18466.513351 eV Total energy + Delta-G solvation = -3191.136576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.71282 -39.13518 -37.59364 -36.07883 -33.47586 -31.93439 -30.21786 -28.65769 -28.10420 -26.16487 -25.18697 -23.47008 -21.49330 -21.09461 -19.68341 -19.37968 -17.55732 -17.26150 -16.60433 -16.22643 -15.65080 -15.20369 -14.68267 -14.28815 -14.09004 -13.59607 -13.35607 -13.14286 -12.72565 -12.66802 -12.33914 -11.99280 -11.86420 -11.73048 -11.46112 -11.17446 -10.94641 -10.77325 -10.69808 -10.64769 -10.38933 -10.04226 -9.87969 -9.64670 -9.60930 -8.99548 -8.30178 -7.51379 -7.33763 -6.81478 -4.35609 2.43087 2.60165 2.71805 2.83404 3.19081 3.29031 3.43217 4.14265 4.47106 4.61325 4.66463 4.94230 5.08904 5.10987 5.17637 5.37034 5.47583 5.57751 5.66070 5.79403 5.91591 6.01104 6.09021 6.23601 6.25524 6.40325 6.43912 6.52036 6.67068 6.83894 6.89199 7.03498 7.28768 7.44824 7.54681 7.71894 7.79218 7.97198 8.04650 8.21004 8.43642 8.74894 8.93690 10.21318 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.006896 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.840059 B = 4059.535346 C = 4933.247746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.468 3.532 4 O -0.482 6.482 5 C 0.025 3.975 6 H 0.106 0.894 7 C -0.138 4.138 8 C 0.029 3.971 9 N -0.430 5.430 10 C 0.088 3.912 11 C -0.155 4.155 12 C -0.079 4.079 13 C -0.224 4.224 14 C -0.098 4.098 15 C -0.193 4.193 16 C 0.101 3.899 17 C -0.471 4.471 18 H 0.089 0.911 19 C 0.100 3.900 20 N -0.816 5.816 21 Si 0.863 3.137 22 H -0.269 1.269 23 H -0.284 1.284 24 H -0.228 1.228 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.165 -8.222 -1.211 11.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.309 3.691 4 O -0.366 6.366 5 C -0.086 4.086 6 H 0.123 0.877 7 C -0.175 4.175 8 C -0.099 4.099 9 N -0.153 5.153 10 C -0.039 4.039 11 C -0.156 4.156 12 C -0.098 4.098 13 C -0.244 4.244 14 C -0.117 4.117 15 C -0.212 4.212 16 C 0.099 3.901 17 C -0.501 4.501 18 H 0.106 0.894 19 C -0.117 4.117 20 N -0.442 5.442 21 Si 0.687 3.313 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.151 1.151 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.624 -7.369 -0.879 11.378 hybrid contribution -0.139 0.049 0.207 0.254 sum -8.763 -7.320 -0.673 11.438 Atomic orbital electron populations 1.23184 0.77033 1.03157 1.02407 1.86505 1.22871 1.34149 1.84753 1.23638 0.91594 0.81123 0.72775 1.90675 1.66467 1.36213 1.43257 1.23202 0.87785 0.96466 1.01104 0.87677 1.23301 0.99138 1.00864 0.94238 1.23810 0.92987 0.95667 0.97420 1.68916 1.21023 1.15332 1.10059 1.21260 0.97565 0.95059 0.90002 1.19516 0.97177 0.93329 1.05621 1.20510 0.97245 0.93732 0.98342 1.20445 1.01849 0.94328 1.07738 1.20670 0.95591 0.97594 0.97816 1.21223 1.01091 0.94984 1.03901 1.17548 0.89963 0.91432 0.91197 1.19075 1.22076 1.08321 1.00629 0.89355 1.25763 0.93356 0.94372 0.98190 1.69782 1.17233 1.39772 1.17429 0.86881 0.82201 0.81858 0.80372 1.19487 1.21029 1.15055 0.92115 0.92157 0.88457 0.89057 0.89799 0.90207 0.88364 0.92646 0.92820 0.89044 0.89016 0.89037 0.88517 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -5.03 10.57 -39.25 -0.41 -5.44 16 3 C 0.47 7.73 7.53 36.00 0.27 8.00 16 4 O -0.48 -9.64 16.41 -18.75 -0.31 -9.95 16 5 C 0.03 0.40 3.54 -72.59 -0.26 0.14 16 6 H 0.11 1.41 7.91 -51.93 -0.41 1.00 16 7 C -0.14 -2.03 8.00 -26.20 -0.21 -2.23 16 8 C 0.03 0.54 5.54 -7.55 -0.04 0.49 16 9 N -0.43 -8.42 5.74 -239.36 -1.37 -9.80 16 10 C 0.09 1.75 4.72 -4.97 -0.02 1.73 16 11 C -0.15 -3.54 5.52 -103.91 -0.57 -4.12 16 12 C -0.08 -1.75 9.65 -39.66 -0.38 -2.13 16 13 C -0.22 -4.83 10.05 -39.29 -0.39 -5.23 16 14 C -0.10 -2.18 10.02 -39.66 -0.40 -2.57 16 15 C -0.19 -4.64 6.80 -38.87 -0.26 -4.90 16 16 C 0.10 2.49 4.64 -106.82 -0.50 1.99 16 17 C -0.47 -11.77 6.09 -37.74 -0.23 -12.00 16 18 H 0.09 2.29 6.42 -52.49 -0.34 1.95 16 19 C 0.10 2.50 4.45 -17.34 -0.08 2.43 16 20 N -0.82 -20.88 13.93 55.55 0.77 -20.11 16 21 Si 0.86 20.12 26.36 -169.99 -4.48 15.64 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.23 -5.52 5.46 56.52 0.31 -5.22 16 25 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.45 6.56 -51.93 -0.34 1.11 16 31 H 0.10 2.08 6.40 -51.93 -0.33 1.75 16 32 H 0.06 1.01 7.82 -51.93 -0.41 0.60 16 33 H 0.05 1.04 6.28 -51.93 -0.33 0.71 16 34 H 0.09 1.83 8.00 -52.49 -0.42 1.41 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 37 H 0.10 2.31 6.99 -52.49 -0.37 1.94 16 38 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 311.22 15.07 4.69 4.69 Total: -1.00 -29.17 311.22 -8.25 -37.42 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.12 Total: 4.50 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -2.01 Total: -16.95 kcal Atomic # 7 Polarization: -29.30 SS G_CDS: -0.60 Total: -29.91 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.72 Total: -15.39 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.48 Total: 15.64 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.17 -8.25 -37.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235514315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.285 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds