Wall clock time and date at job start Mon Mar 30 2020 01:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00235 * 2 1 4 4 O 1.20826 * 119.99713 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00313 * 180.02562 * 3 2 1 6 6 H 1.09002 * 112.75018 * 49.22455 * 5 3 2 7 7 C 1.53512 * 113.47646 * 278.37535 * 5 3 2 8 8 C 1.53506 * 83.57774 * 219.20999 * 7 5 3 9 9 N 1.47481 * 87.93373 * 26.02492 * 8 7 5 10 10 C 1.46903 * 111.00010 * 221.29785 * 9 8 7 11 11 C 1.50702 * 109.46945 * 260.69062 * 10 9 8 12 12 C 1.37639 * 120.12475 * 254.98413 * 11 10 9 13 13 C 1.38613 * 120.24794 * 180.02562 * 12 11 10 14 14 C 1.38654 * 120.50073 * 359.97438 * 13 12 11 15 15 C 1.37602 * 120.25004 * 0.02562 * 14 13 12 16 16 C 1.40693 * 120.12803 * 75.00963 * 11 10 9 17 17 C 1.41397 * 120.24747 * 359.97438 * 16 11 10 18 18 H 1.07998 * 119.99788 * 43.49516 * 17 16 11 19 19 C 1.39947 * 120.00102 * 223.49713 * 17 16 11 20 20 N 1.30818 * 119.99708 * 204.64975 * 19 17 16 21 21 Si 1.86803 * 119.99932 * 24.65048 * 19 17 16 22 22 H 1.48497 * 109.46888 * 91.12275 * 21 19 17 23 23 H 1.48496 * 109.46648 * 211.12036 * 21 19 17 24 24 H 1.48499 * 109.47178 * 331.12241 * 21 19 17 25 25 H 1.09001 * 109.46787 * 300.00284 * 1 2 3 26 26 H 1.09001 * 109.46664 * 60.00311 * 1 2 3 27 27 H 1.09004 * 109.46873 * 180.02562 * 1 2 3 28 28 H 1.09007 * 114.16869 * 332.85930 * 7 5 3 29 29 H 1.08997 * 114.16952 * 105.55963 * 7 5 3 30 30 H 1.09005 * 113.47741 * 271.25687 * 8 7 5 31 31 H 1.09002 * 113.47880 * 140.78900 * 8 7 5 32 32 H 1.09001 * 109.46957 * 140.68806 * 10 9 8 33 33 H 1.09005 * 109.46894 * 20.68670 * 10 9 8 34 34 H 1.08000 * 119.87640 * 0.02562 * 12 11 10 35 35 H 1.07991 * 119.74819 * 180.02562 * 13 12 11 36 36 H 1.07995 * 119.87804 * 180.28280 * 14 13 12 37 37 H 1.07994 * 120.12859 * 179.97438 * 15 14 13 38 38 H 0.96998 * 120.00035 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0213 0.6415 -0.7621 7 6 4.1883 1.1018 1.3922 8 6 5.1477 2.1992 0.9108 9 7 4.0822 2.6565 -0.0006 10 6 4.6315 3.0134 -1.3155 11 6 4.7999 4.5085 -1.4006 12 6 3.9208 5.2614 -2.1455 13 6 4.0736 6.6368 -2.2259 14 6 5.1109 7.2698 -1.5582 15 6 6.0015 6.5372 -0.8076 16 6 5.8565 5.1401 -0.7192 17 6 6.7656 4.3769 0.0491 18 1 7.1539 3.4473 -0.3400 19 6 7.1623 4.8262 1.3137 20 7 8.3050 4.4366 1.8175 21 14 6.0600 5.9822 2.2824 22 1 5.1515 5.1895 3.1491 23 1 6.8968 6.8729 3.1260 24 1 5.2557 6.8032 1.3420 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.5379 1.4058 2.2124 29 1 4.6622 0.1333 1.5521 30 1 6.0255 1.8122 0.3932 31 1 5.3995 2.9255 1.6836 32 1 3.9490 2.6795 -2.0971 33 1 5.5998 2.5306 -1.4480 34 1 3.1090 4.7788 -2.6693 35 1 3.3790 7.2197 -2.8124 36 1 5.2178 8.3425 -1.6241 37 1 6.8089 7.0322 -0.2887 38 1 8.5798 4.7476 2.6942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235514315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:57 Heat of formation + Delta-G solvation = -37.541330 kcal Electronic energy + Delta-G solvation = -21658.448128 eV Core-core repulsion = 18466.513351 eV Total energy + Delta-G solvation = -3191.934777 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.01736 -40.48661 -39.27174 -37.32518 -35.35023 -33.53624 -32.04210 -29.98772 -29.43180 -27.35548 -26.90364 -25.04448 -22.98620 -22.67904 -21.34312 -20.70916 -19.14619 -18.78026 -17.82701 -17.44368 -17.30001 -16.68770 -16.31832 -15.96285 -15.42900 -15.18663 -14.98405 -14.51922 -14.29627 -14.05503 -13.84181 -13.65742 -13.46579 -12.99503 -12.88299 -12.72598 -12.55528 -12.39700 -12.24190 -11.95246 -11.77833 -11.76901 -11.50076 -11.32228 -11.17604 -10.87732 -9.74706 -9.26682 -9.16877 -8.72767 -6.26845 0.84194 0.92111 1.17545 1.30953 1.40161 1.52601 1.67649 2.24628 2.73617 3.11781 3.36245 3.61855 3.79096 3.97194 4.09441 4.31039 4.33687 4.34034 4.37815 4.42817 4.49629 4.53873 4.68040 4.70625 4.83829 4.84539 5.03130 5.08306 5.13055 5.23968 5.33792 5.44456 5.48383 5.70391 5.93182 5.99568 6.10967 6.13697 6.40443 6.55242 6.82590 6.89450 7.04722 8.34752 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.006896 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.840059 B = 4059.535346 C = 4933.247746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.474 3.526 4 O -0.524 6.524 5 C 0.029 3.971 6 H 0.135 0.865 7 C -0.118 4.118 8 C 0.027 3.973 9 N -0.461 5.461 10 C 0.093 3.907 11 C -0.162 4.162 12 C -0.093 4.093 13 C -0.216 4.216 14 C -0.107 4.107 15 C -0.211 4.211 16 C 0.077 3.923 17 C -0.473 4.473 18 H 0.070 0.930 19 C 0.081 3.919 20 N -0.848 5.848 21 Si 0.900 3.100 22 H -0.274 1.274 23 H -0.277 1.277 24 H -0.242 1.242 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.137 0.863 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.870 -9.207 -1.941 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.317 3.683 4 O -0.412 6.412 5 C -0.081 4.081 6 H 0.152 0.848 7 C -0.155 4.155 8 C -0.101 4.101 9 N -0.185 5.185 10 C -0.034 4.034 11 C -0.163 4.163 12 C -0.111 4.111 13 C -0.235 4.235 14 C -0.125 4.125 15 C -0.231 4.231 16 C 0.075 3.925 17 C -0.504 4.504 18 H 0.088 0.912 19 C -0.133 4.133 20 N -0.476 5.476 21 Si 0.724 3.276 22 H -0.200 1.200 23 H -0.202 1.202 24 H -0.165 1.165 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.155 0.845 28 H 0.106 0.894 29 H 0.139 0.861 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.130 0.870 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.107 0.893 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.331 -8.372 -1.608 13.395 hybrid contribution 0.236 0.343 0.306 0.516 sum -10.096 -8.030 -1.303 12.965 Atomic orbital electron populations 1.23534 0.74998 1.05708 1.02228 1.86489 1.24772 1.32370 1.83942 1.23715 0.91773 0.81239 0.71621 1.90662 1.67359 1.37700 1.45458 1.23288 0.87736 0.94665 1.02436 0.84774 1.23239 0.97515 1.01204 0.93555 1.23649 0.93554 0.96173 0.96721 1.68792 1.21545 1.18303 1.09811 1.21204 0.97974 0.93263 0.90973 1.19954 0.96560 0.95238 1.04576 1.20857 0.97665 0.94257 0.98364 1.20888 1.01504 0.94536 1.06586 1.20999 0.95250 0.99094 0.97175 1.21345 1.01769 0.95166 1.04776 1.17735 0.90785 0.91902 0.92075 1.18932 1.22729 1.07800 1.00951 0.91218 1.26034 0.93711 0.95046 0.98488 1.69792 1.18126 1.41522 1.18192 0.86329 0.81142 0.80738 0.79358 1.19970 1.20192 1.16485 0.92419 0.92319 0.84535 0.89445 0.86078 0.90494 0.91857 0.91076 0.92999 0.86968 0.85904 0.86310 0.89319 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -8.88 10.57 -51.39 -0.54 -9.43 16 3 C 0.47 14.74 7.53 71.23 0.54 15.28 16 4 O -0.52 -20.42 16.41 21.96 0.36 -20.06 16 5 C 0.03 0.86 3.54 41.44 0.15 1.01 16 6 H 0.13 3.18 7.91 -2.39 -0.02 3.16 16 7 C -0.12 -3.24 8.00 30.94 0.25 -2.99 16 8 C 0.03 1.00 5.54 83.57 0.46 1.47 16 9 N -0.46 -17.76 5.74 -911.20 -5.23 -22.99 16 10 C 0.09 3.63 4.72 85.56 0.40 4.03 16 11 C -0.16 -7.32 5.52 -19.41 -0.11 -7.43 16 12 C -0.09 -3.90 9.65 22.22 0.21 -3.69 16 13 C -0.22 -8.77 10.05 22.46 0.23 -8.54 16 14 C -0.11 -4.56 10.02 22.22 0.22 -4.34 16 15 C -0.21 -10.16 6.80 22.73 0.15 -10.01 16 16 C 0.08 3.84 4.64 -21.29 -0.10 3.74 16 17 C -0.47 -24.31 6.09 23.46 0.14 -24.16 16 18 H 0.07 3.76 6.42 -2.91 -0.02 3.74 16 19 C 0.08 4.15 4.45 85.26 0.38 4.53 16 20 N -0.85 -44.54 13.93 21.83 0.30 -44.23 16 21 Si 0.90 42.27 26.36 68.60 1.81 44.08 16 22 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.24 -11.77 5.46 99.48 0.54 -11.23 16 25 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 26 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 27 H 0.14 1.40 8.14 -2.39 -0.02 1.39 16 28 H 0.09 2.49 8.11 -2.38 -0.02 2.47 16 29 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.08 2.83 6.56 -2.38 -0.02 2.81 16 31 H 0.06 2.76 6.40 -2.39 -0.02 2.75 16 32 H 0.07 2.47 7.82 -2.39 -0.02 2.45 16 33 H 0.05 2.01 6.28 -2.38 -0.01 1.99 16 34 H 0.11 4.21 8.00 -2.91 -0.02 4.18 16 35 H 0.12 4.18 8.06 -2.92 -0.02 4.16 16 36 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 37 H 0.09 4.30 6.99 -2.91 -0.02 4.28 16 38 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 Total: -1.00 -63.47 311.22 1.72 -61.75 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.90 Total: 20.26 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 4.13 Total: -29.38 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -4.93 Total: -67.22 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.18 Total: -29.49 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.81 Total: 44.08 kcal Total: -63.47 1.72 -61.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235514315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.211 kcal (2) G-P(sol) polarization free energy of solvation -63.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds