Wall clock time and date at job start Mon Mar 30 2020 01:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 116.99718 * 2 1 4 4 O 1.20828 * 119.99988 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00177 * 180.02562 * 3 2 1 6 6 C 1.53515 * 114.17367 * 179.97438 * 5 3 2 7 7 N 1.47480 * 87.93321 * 220.13907 * 6 5 3 8 8 C 1.46895 * 110.99558 * 138.70288 * 7 6 5 9 9 C 1.50703 * 109.47085 * 163.94488 * 8 7 6 10 10 C 1.37645 * 120.12851 * 260.56486 * 9 8 7 11 11 C 1.38606 * 120.24683 * 180.02562 * 10 9 8 12 12 C 1.38659 * 120.50529 * 359.97438 * 11 10 9 13 13 C 1.37592 * 120.24607 * 0.02562 * 12 11 10 14 14 C 1.40692 * 120.12915 * 80.58143 * 9 8 7 15 15 C 1.41400 * 120.24650 * 359.96025 * 14 9 8 16 16 H 1.08004 * 119.99643 * 30.01721 * 15 14 9 17 17 C 1.39939 * 120.00313 * 210.01971 * 15 14 9 18 18 N 1.30826 * 120.00001 * 10.51207 * 17 15 14 19 19 Si 1.86804 * 120.00069 * 190.50647 * 17 15 14 20 20 H 1.48506 * 109.46849 * 60.00261 * 19 17 15 21 21 H 1.48495 * 109.47091 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47211 * 300.00534 * 19 17 15 23 23 C 1.47480 * 87.83471 * 27.00953 * 7 6 5 24 24 H 1.09003 * 109.47095 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47354 * 299.99257 * 1 2 3 26 26 H 1.08997 * 109.47512 * 59.99877 * 1 2 3 27 27 H 1.08995 * 113.25636 * 312.94923 * 5 3 2 28 28 H 1.08998 * 113.47611 * 105.36681 * 6 5 3 29 29 H 1.09000 * 113.52746 * 334.91930 * 6 5 3 30 30 H 1.09006 * 109.47687 * 43.94502 * 8 7 6 31 31 H 1.09002 * 109.47411 * 283.94263 * 8 7 6 32 32 H 1.08000 * 119.87449 * 0.02562 * 10 9 8 33 33 H 1.08009 * 119.74472 * 180.02562 * 11 10 9 34 34 H 1.07999 * 119.87100 * 180.27577 * 12 11 10 35 35 H 1.08004 * 120.12704 * 180.02562 * 13 12 11 36 36 H 0.96999 * 120.00075 * 180.02562 * 18 17 15 37 37 H 1.09004 * 113.47765 * 87.75758 * 23 7 6 38 38 H 1.08997 * 113.47689 * 218.22032 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.1206 2.7066 -0.0011 7 7 5.1517 2.2498 -0.9515 8 6 5.3737 3.2473 -2.0068 9 6 6.6708 2.9501 -2.7142 10 6 7.8108 3.6498 -2.3897 11 6 9.0049 3.3789 -3.0391 12 6 9.0662 2.4017 -4.0209 13 6 7.9392 1.6898 -4.3615 14 6 6.7211 1.9566 -3.7090 15 6 5.5565 1.2309 -4.0505 16 1 4.5851 1.6937 -3.9569 17 6 5.6625 -0.0868 -4.5096 18 7 6.8061 -0.7171 -4.4302 19 14 4.1710 -0.9458 -5.2356 20 1 3.6931 -0.1901 -6.4214 21 1 4.5438 -2.3237 -5.6447 22 1 3.0906 -1.0060 -4.2187 23 6 4.2026 1.2123 -1.3961 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 4.0320 0.6161 0.7321 28 1 4.5248 3.0160 0.9627 29 1 3.4335 3.4391 -0.4247 30 1 5.4216 4.2417 -1.5627 31 1 4.5524 3.2082 -2.7224 32 1 7.7747 4.4129 -1.6262 33 1 9.8947 3.9326 -2.7777 34 1 10.0031 2.1958 -4.5172 35 1 7.9892 0.9287 -5.1262 36 1 6.8797 -1.6304 -4.7487 37 1 3.5368 1.5452 -2.1924 38 1 4.6765 0.2553 -1.6147 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235516040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:13 Heat of formation + Delta-G solvation = -27.240965 kcal Electronic energy + Delta-G solvation = -21349.857633 eV Core-core repulsion = 18158.369513 eV Total energy + Delta-G solvation = -3191.488120 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85285 -39.16009 -37.38995 -36.28573 -33.59724 -31.90560 -29.51103 -28.99059 -27.47017 -25.76759 -25.23729 -24.14246 -21.59172 -20.89792 -19.51327 -19.40754 -17.69871 -17.12238 -16.67737 -16.32288 -15.39058 -15.19722 -14.66489 -14.36601 -14.18312 -13.64004 -13.28327 -12.96847 -12.70333 -12.55674 -12.28885 -12.16868 -12.01398 -11.53400 -11.34909 -11.13582 -10.87303 -10.81184 -10.78286 -10.48063 -10.43952 -10.26604 -10.16752 -9.45411 -9.40952 -9.18572 -8.29465 -7.32962 -7.27514 -6.67767 -4.34518 2.23518 2.72167 2.81950 3.01199 3.05937 3.08201 3.24103 3.93486 4.38474 4.61518 4.69689 4.96803 5.03794 5.10530 5.23025 5.44569 5.47333 5.61280 5.77821 5.82480 5.94040 6.06182 6.26458 6.27741 6.38092 6.38955 6.51241 6.53421 6.67641 6.93905 7.12059 7.28558 7.42243 7.56710 7.65328 7.79739 7.93652 8.04349 8.11446 8.33036 8.64067 8.91910 8.99792 10.26773 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.006866 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.188186 B = 4077.321143 C = 5560.861990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.475 3.525 4 O -0.512 6.512 5 C -0.131 4.131 6 C 0.014 3.986 7 N -0.449 5.449 8 C 0.090 3.910 9 C -0.180 4.180 10 C -0.082 4.082 11 C -0.236 4.236 12 C -0.109 4.109 13 C -0.156 4.156 14 C 0.124 3.876 15 C -0.462 4.462 16 H 0.073 0.927 17 C 0.079 3.921 18 N -0.800 5.800 19 Si 0.895 3.105 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.264 1.264 23 C 0.045 3.955 24 H 0.099 0.901 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.133 0.867 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.279 0.721 37 H 0.072 0.928 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.224 -0.001 6.039 10.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.318 3.682 4 O -0.400 6.400 5 C -0.151 4.151 6 C -0.115 4.115 7 N -0.171 5.171 8 C -0.037 4.037 9 C -0.181 4.181 10 C -0.101 4.101 11 C -0.255 4.255 12 C -0.128 4.128 13 C -0.175 4.175 14 C 0.122 3.878 15 C -0.492 4.492 16 H 0.091 0.909 17 C -0.138 4.138 18 N -0.426 5.426 19 Si 0.720 3.280 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.084 4.084 24 H 0.118 0.882 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.135 0.865 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.666 -0.095 6.195 9.857 hybrid contribution -1.569 -0.254 -0.653 1.718 sum -9.235 -0.349 5.542 10.776 Atomic orbital electron populations 1.23242 0.76870 1.03523 1.02355 1.86560 1.23038 1.33672 1.83905 1.23765 0.91859 0.81108 0.71419 1.90630 1.67114 1.36471 1.45794 1.22941 0.86347 1.01838 1.03960 1.23818 0.94096 0.93539 1.00086 1.69134 1.28429 1.08411 1.11110 1.21219 0.96914 0.93489 0.92111 1.19383 0.93447 1.04532 1.00786 1.20350 0.92954 0.98642 0.98152 1.20370 0.96631 1.04300 1.04238 1.20708 0.97206 0.96842 0.98041 1.21329 0.92859 1.01363 1.01997 1.17393 0.93116 0.89257 0.88059 1.19393 0.93811 0.96742 1.39291 0.90927 1.25756 0.96722 0.97744 0.93564 1.69782 1.25382 1.11835 1.35643 0.86566 0.82296 0.78648 0.80475 1.19064 1.20305 1.18852 1.23770 0.93069 1.00440 0.91105 0.88243 0.92080 0.91975 0.84954 0.89356 0.90494 0.92474 0.93403 0.89590 0.89666 0.89611 0.86488 0.91034 0.90942 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.55 101.05 1.07 1.43 16 2 O -0.36 -5.05 10.57 -39.25 -0.41 -5.47 16 3 C 0.48 7.36 7.53 36.01 0.27 7.63 16 4 O -0.51 -8.83 15.70 -18.75 -0.29 -9.13 16 5 C -0.13 -1.99 4.58 -91.24 -0.42 -2.41 16 6 C 0.01 0.21 6.98 -7.55 -0.05 0.16 16 7 N -0.45 -8.51 6.32 -246.10 -1.55 -10.06 16 8 C 0.09 1.80 4.71 -4.98 -0.02 1.78 16 9 C -0.18 -4.20 5.52 -103.91 -0.57 -4.77 16 10 C -0.08 -1.84 9.65 -39.66 -0.38 -2.23 16 11 C -0.24 -5.32 10.05 -39.29 -0.39 -5.71 16 12 C -0.11 -2.58 10.02 -39.66 -0.40 -2.98 16 13 C -0.16 -4.00 8.65 -38.87 -0.34 -4.34 16 14 C 0.12 3.17 5.54 -106.82 -0.59 2.57 16 15 C -0.46 -11.40 6.59 -37.74 -0.25 -11.65 16 16 H 0.07 1.73 5.36 -52.48 -0.28 1.45 16 17 C 0.08 1.89 5.25 -17.34 -0.09 1.80 16 18 N -0.80 -20.17 10.91 55.55 0.61 -19.56 16 19 Si 0.90 18.21 29.57 -169.99 -5.03 13.18 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 21 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 C 0.05 0.82 5.41 -7.55 -0.04 0.78 16 24 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 26 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 27 H 0.13 1.78 8.14 -51.93 -0.42 1.35 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.08 1.22 7.23 -51.93 -0.38 0.85 16 30 H 0.06 1.04 7.86 -51.93 -0.41 0.63 16 31 H 0.05 0.98 5.86 -51.93 -0.30 0.67 16 32 H 0.09 1.72 8.04 -52.49 -0.42 1.30 16 33 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 35 H 0.12 3.10 6.31 -52.48 -0.33 2.77 16 36 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 37 H 0.07 1.37 6.40 -51.93 -0.33 1.04 16 38 H 0.10 2.09 7.95 -51.93 -0.41 1.68 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -28.02 315.54 -9.10 -37.12 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -4.96 Total: 7.09 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -2.21 Total: -17.93 kcal Atomic # 7 Polarization: -28.68 SS G_CDS: -0.95 Total: -29.63 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.71 Total: -14.59 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.02 -9.10 -37.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235516040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.883 kcal (2) G-P(sol) polarization free energy of solvation -28.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds