Wall clock time and date at job start Mon Mar 30 2020 01:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00069 * 2 1 4 4 H 1.09002 * 109.62694 * 30.39583 * 3 2 1 5 5 C 1.53015 * 109.63402 * 270.00694 * 3 2 1 6 6 C 1.50082 * 110.13837 * 190.40044 * 5 3 2 7 7 C 1.31219 * 123.83717 * 17.15367 * 6 5 3 8 8 C 1.47686 * 118.07885 * 179.57500 * 7 6 5 9 9 C 1.39635 * 119.66463 * 184.94090 * 8 7 6 10 10 C 1.38163 * 119.13095 * 180.02562 * 9 8 7 11 11 C 1.39463 * 118.46753 * 0.02562 * 10 9 8 12 12 O 1.35705 * 120.36660 * 180.02562 * 11 10 9 13 13 C 1.34806 * 116.99947 * 354.51008 * 12 11 10 14 14 H 1.08006 * 120.00137 * 5.05166 * 13 12 11 15 15 C 1.38649 * 119.99986 * 185.04676 * 13 12 11 16 16 N 1.31557 * 120.00171 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00085 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46998 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46964 * 120.00096 * 17 15 13 20 20 H 1.48499 * 109.47451 * 240.00352 * 17 15 13 21 21 C 1.38984 * 119.26778 * 0.02562 * 11 10 9 22 22 N 1.31636 * 120.80479 * 359.97438 * 21 11 10 23 23 C 1.50088 * 123.83619 * 359.85724 * 7 6 5 24 24 C 1.52838 * 110.22681 * 16.68945 * 23 7 6 25 25 H 1.08996 * 109.47111 * 299.99386 * 1 2 3 26 26 H 1.08994 * 109.47346 * 59.99760 * 1 2 3 27 27 H 1.09002 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.36346 * 70.18989 * 5 3 2 29 29 H 1.09005 * 109.24734 * 310.53077 * 5 3 2 30 30 H 1.08007 * 118.08384 * 197.14130 * 6 5 3 31 31 H 1.07994 * 120.43681 * 0.03821 * 9 8 7 32 32 H 1.07992 * 120.76304 * 180.29492 * 10 9 8 33 33 H 0.96994 * 119.99886 * 179.97438 * 16 15 13 34 34 H 1.08002 * 119.60051 * 180.02562 * 21 11 10 35 35 H 1.08999 * 109.35481 * 137.08401 * 23 7 6 36 36 H 1.08999 * 109.35741 * 256.67754 * 23 7 6 37 37 H 1.09007 * 109.69684 * 190.83746 * 24 23 7 38 38 H 1.08998 * 109.42266 * 70.34326 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3502 2.0001 0.5195 5 6 2.2192 1.7752 -1.4412 6 6 3.0531 3.0228 -1.4622 7 6 3.7865 3.4286 -0.4526 8 6 4.5659 4.6725 -0.6152 9 6 5.4368 5.0797 0.3975 10 6 6.1602 6.2454 0.2341 11 6 5.9903 6.9737 -0.9431 12 8 6.6818 8.1239 -1.1440 13 6 7.4345 8.5724 -0.1196 14 1 7.5324 7.9803 0.7784 15 6 8.0832 9.7938 -0.2187 16 7 7.9637 10.5153 -1.3123 17 14 9.1257 10.4156 1.2012 18 1 9.0972 9.4250 2.3072 19 1 10.5254 10.6042 0.7422 20 1 8.5838 11.7116 1.6828 21 6 5.1048 6.5085 -1.9081 22 7 4.4300 5.3936 -1.7224 23 6 3.8842 2.6995 0.8557 24 6 3.3733 1.2673 0.7018 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.2512 1.9798 -1.8985 29 1 2.7266 0.9920 -2.0044 30 1 3.0497 3.6217 -2.3611 31 1 5.5437 4.4911 1.2966 32 1 6.8447 6.5824 0.9983 33 1 8.4172 11.3699 -1.3814 34 1 4.9694 7.0680 -2.8219 35 1 4.9240 2.6812 1.1823 36 1 3.2817 3.2159 1.6030 37 1 3.2666 0.8077 1.6845 38 1 4.0787 0.6934 0.1008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243808879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:36 Heat of formation + Delta-G solvation = -35.412626 kcal Electronic energy + Delta-G solvation = -20261.689804 eV Core-core repulsion = 17069.847334 eV Total energy + Delta-G solvation = -3191.842470 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.86666 -39.03291 -37.46338 -36.13568 -32.57210 -31.66460 -31.27656 -30.50997 -28.10260 -26.58801 -25.47883 -23.77896 -22.78479 -21.86698 -21.18121 -18.43889 -17.78224 -17.25402 -16.76710 -16.07068 -15.49435 -15.26232 -14.76215 -14.60322 -14.16127 -13.92376 -13.78313 -13.34020 -13.19321 -12.95183 -12.66769 -12.55690 -12.13884 -12.10073 -11.94152 -11.81484 -11.41450 -11.16531 -11.03121 -10.70842 -10.57620 -10.54288 -9.83261 -9.59171 -9.25826 -9.03809 -8.77036 -8.70018 -7.17557 -6.63307 -4.20000 1.59467 2.05886 2.88374 3.03852 3.07808 3.10054 3.57978 3.81930 4.60056 4.61887 4.73567 4.82882 4.95382 5.05759 5.11879 5.15763 5.20272 5.25732 5.33416 5.42658 5.45897 5.54791 5.69519 5.77466 5.81639 5.85829 5.89118 5.95960 6.03084 6.16685 6.26474 6.53275 6.74133 6.90334 7.01131 7.06524 7.13438 7.28727 7.47557 7.79389 8.74106 8.81671 9.46337 10.53309 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.048155 B = 0.003143 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.314767 B = 8906.262282 C = 9359.244862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.087 3.913 4 H 0.063 0.937 5 C -0.104 4.104 6 C -0.149 4.149 7 C -0.059 4.059 8 C 0.039 3.961 9 C -0.106 4.106 10 C -0.202 4.202 11 C 0.105 3.895 12 O -0.162 6.162 13 C -0.394 4.394 14 H 0.094 0.906 15 C 0.042 3.958 16 N -0.853 5.853 17 Si 0.944 3.056 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.274 1.274 21 C 0.033 3.967 22 N -0.437 5.437 23 C -0.078 4.078 24 C -0.112 4.112 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.137 0.863 33 H 0.273 0.727 34 H 0.151 0.849 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 -14.954 4.685 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.029 3.971 4 H 0.081 0.919 5 C -0.142 4.142 6 C -0.169 4.169 7 C -0.059 4.059 8 C -0.095 4.095 9 C -0.126 4.126 10 C -0.228 4.228 11 C 0.048 3.952 12 O -0.062 6.062 13 C -0.470 4.470 14 H 0.112 0.888 15 C -0.164 4.164 16 N -0.486 5.486 17 Si 0.769 3.231 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.131 4.131 22 N -0.146 5.146 23 C -0.115 4.115 24 C -0.149 4.149 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.154 0.846 33 H 0.083 0.917 34 H 0.169 0.831 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.856 -14.986 3.774 18.329 hybrid contribution 0.971 0.994 1.336 1.928 sum -8.885 -13.992 5.110 17.344 Atomic orbital electron populations 1.22761 0.81394 1.02433 0.99986 1.87890 1.19408 1.28218 1.95103 1.22248 0.94985 0.83954 0.95885 0.91888 1.20884 0.99742 0.96519 0.97005 1.22310 0.97855 0.96941 0.99810 1.19296 0.97610 0.93650 0.95376 1.19356 1.00975 0.96943 0.92238 1.21780 0.96031 0.96053 0.98724 1.21483 1.04523 0.97090 0.99674 1.20553 0.91933 0.88618 0.94103 1.83956 1.51378 1.31847 1.39063 1.21436 1.26250 1.03880 0.95406 0.88825 1.25363 0.97655 0.94937 0.98468 1.70040 1.40112 1.12489 1.25956 0.85593 0.79000 0.79123 0.79420 1.18961 1.19921 1.19918 1.21743 0.96638 0.94909 0.99779 1.67377 1.21183 1.04703 1.21329 1.20329 1.02107 0.93746 0.95336 1.21600 0.95401 0.96998 1.00926 0.94158 0.94048 0.89877 0.91327 0.90188 0.85855 0.86119 0.84588 0.91679 0.83142 0.90088 0.90754 0.90950 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.83 101.05 1.09 1.35 16 2 O -0.39 -4.37 10.37 -35.23 -0.37 -4.73 16 3 C 0.09 0.97 2.65 -26.54 -0.07 0.90 16 4 H 0.06 0.68 7.78 -51.93 -0.40 0.28 16 5 C -0.10 -1.24 5.74 -28.17 -0.16 -1.40 16 6 C -0.15 -2.18 9.39 -36.38 -0.34 -2.52 16 7 C -0.06 -0.90 5.79 -102.84 -0.60 -1.50 16 8 C 0.04 0.74 6.68 -83.05 -0.55 0.18 16 9 C -0.11 -1.94 9.34 -39.09 -0.37 -2.31 16 10 C -0.20 -4.26 9.25 -39.15 -0.36 -4.62 16 11 C 0.11 2.49 6.67 -38.85 -0.26 2.23 16 12 O -0.16 -4.44 9.76 0.26 0.00 -4.43 16 13 C -0.39 -10.53 9.49 30.88 0.29 -10.24 16 14 H 0.09 2.30 5.25 -52.48 -0.28 2.03 16 15 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 16 N -0.85 -24.03 13.67 55.48 0.76 -23.28 16 17 Si 0.94 19.62 29.55 -169.99 -5.02 14.59 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 C 0.03 0.71 11.14 -17.36 -0.19 0.52 16 22 N -0.44 -8.96 9.04 -9.71 -0.09 -9.05 16 23 C -0.08 -0.94 5.03 -28.26 -0.14 -1.08 16 24 C -0.11 -1.22 5.66 -26.63 -0.15 -1.37 16 25 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.12 1.99 7.03 -52.48 -0.37 1.63 16 31 H 0.12 1.80 6.36 -52.49 -0.33 1.46 16 32 H 0.14 2.78 5.75 -52.49 -0.30 2.48 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.15 3.07 8.06 -52.49 -0.42 2.65 16 35 H 0.08 0.93 6.77 -51.93 -0.35 0.58 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -29.79 317.24 -6.81 -36.60 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -4.97 Total: 4.37 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -1.91 Total: -18.86 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.67 Total: -32.32 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.36 Total: -9.17 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.79 -6.81 -36.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243808879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.189 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds