Wall clock time and date at job start Mon Mar 30 2020 01:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99501 * 2 1 4 4 H 1.08997 * 109.79145 * 330.49471 * 3 2 1 5 5 C 1.53007 * 109.63269 * 90.99556 * 3 2 1 6 6 C 1.50091 * 110.19057 * 169.20589 * 5 3 2 7 7 C 1.31211 * 123.83711 * 343.28628 * 6 5 3 8 8 C 1.47680 * 118.07844 * 180.19447 * 7 6 5 9 9 C 1.39633 * 119.66765 * 185.20539 * 8 7 6 10 10 C 1.38169 * 119.13094 * 179.97438 * 9 8 7 11 11 C 1.39449 * 118.46990 * 0.02562 * 10 9 8 12 12 O 1.35710 * 120.36731 * 180.02562 * 11 10 9 13 13 C 1.34804 * 116.99771 * 354.49061 * 12 11 10 14 14 H 1.07997 * 120.00212 * 5.05591 * 13 12 11 15 15 C 1.38651 * 119.99704 * 185.06230 * 13 12 11 16 16 N 1.31556 * 120.00065 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99946 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47124 * 89.99582 * 17 15 13 19 19 H 1.48497 * 109.47184 * 209.99728 * 17 15 13 20 20 H 1.48494 * 109.47149 * 329.99725 * 17 15 13 21 21 C 1.38993 * 119.26499 * 0.27671 * 11 10 9 22 22 N 1.31631 * 120.80435 * 359.42403 * 21 11 10 23 23 C 1.50084 * 123.83846 * 359.91593 * 7 6 5 24 24 C 1.53017 * 110.13671 * 343.09488 * 23 7 6 25 25 H 1.09006 * 109.46766 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47212 * 300.00211 * 1 2 3 27 27 H 1.09000 * 109.46957 * 60.00374 * 1 2 3 28 28 H 1.08998 * 109.36197 * 289.60063 * 5 3 2 29 29 H 1.08997 * 109.36324 * 49.33062 * 5 3 2 30 30 H 1.07998 * 118.08191 * 163.05372 * 6 5 3 31 31 H 1.07993 * 120.43647 * 0.02562 * 9 8 7 32 32 H 1.08002 * 120.76119 * 179.97438 * 10 9 8 33 33 H 0.97008 * 120.00050 * 180.02562 * 16 15 13 34 34 H 1.07999 * 119.59530 * 179.72951 * 21 11 10 35 35 H 1.09002 * 109.35959 * 103.29865 * 23 7 6 36 36 H 1.09001 * 109.36215 * 223.02207 * 23 7 6 37 37 H 1.08999 * 109.62800 * 169.40119 * 24 23 7 38 38 H 1.08992 * 109.63196 * 289.79654 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3448 2.0057 -0.5051 5 6 2.2421 1.7650 1.4409 6 6 3.0842 3.0073 1.4593 7 6 3.8000 3.4199 0.4400 8 6 4.5863 4.6598 0.5993 9 6 5.2725 5.1885 -0.4959 10 6 6.0043 6.3493 -0.3345 11 6 6.0289 6.9502 0.9237 12 8 6.7349 8.0915 1.1252 13 6 7.4860 8.5360 0.0979 14 1 7.4437 8.0355 -0.8582 15 6 8.3130 9.6356 0.2687 16 7 8.3643 10.2456 1.4332 17 14 9.3545 10.2511 -1.1547 18 1 8.5878 11.2600 -1.9290 19 1 10.5965 10.8711 -0.6274 20 1 9.7070 9.1116 -2.0391 21 6 5.3267 6.3642 1.9703 22 7 4.6340 5.2607 1.7830 23 6 3.8712 2.7024 -0.8763 24 6 3.3626 1.2674 -0.7222 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.2817 1.9698 1.9139 29 1 2.7562 0.9782 1.9928 30 1 3.0990 3.5981 2.3632 31 1 5.2312 4.6970 -1.4566 32 1 6.5455 6.7809 -1.1635 33 1 8.9426 11.0152 1.5526 34 1 5.3457 6.8226 2.9480 35 1 3.2563 3.2271 -1.6076 36 1 4.9049 2.6822 -1.2214 37 1 3.2398 0.8149 -1.7062 38 1 4.0766 0.6866 -0.1385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243808887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:39 Heat of formation + Delta-G solvation = -35.777110 kcal Electronic energy + Delta-G solvation = -20260.023027 eV Core-core repulsion = 17068.164752 eV Total energy + Delta-G solvation = -3191.858275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.86225 -39.03011 -37.46102 -36.13292 -32.57035 -31.65426 -31.27328 -30.50752 -28.10369 -26.58404 -25.47623 -23.77491 -22.78510 -21.86454 -21.18340 -18.43408 -17.77815 -17.24537 -16.77573 -16.06592 -15.49575 -15.24146 -14.78989 -14.60239 -14.15446 -13.86274 -13.79491 -13.37532 -13.19662 -12.94214 -12.65899 -12.55303 -12.12951 -12.12387 -11.90161 -11.82775 -11.43955 -11.14695 -11.03067 -10.71607 -10.60262 -10.54108 -9.83593 -9.58886 -9.25035 -9.03199 -8.77631 -8.69794 -7.17600 -6.63010 -4.19796 1.59641 2.06108 2.88753 3.03791 3.07681 3.09847 3.58346 3.82200 4.59293 4.62945 4.73554 4.82559 4.96010 5.05858 5.11513 5.15632 5.20321 5.25828 5.33086 5.43618 5.46020 5.53398 5.70615 5.77368 5.81967 5.86629 5.88790 5.96004 6.02460 6.16812 6.26702 6.53219 6.74049 6.90222 7.01286 7.06518 7.13440 7.28804 7.47729 7.79486 8.74345 8.81808 9.46425 10.53483 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.048696 B = 0.003141 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.858467 B = 8912.507608 C = 9371.303976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.087 3.913 4 H 0.064 0.936 5 C -0.104 4.104 6 C -0.149 4.149 7 C -0.059 4.059 8 C 0.039 3.961 9 C -0.106 4.106 10 C -0.202 4.202 11 C 0.105 3.895 12 O -0.162 6.162 13 C -0.394 4.394 14 H 0.094 0.906 15 C 0.042 3.958 16 N -0.853 5.853 17 Si 0.944 3.056 18 H -0.271 1.271 19 H -0.275 1.275 20 H -0.266 1.266 21 C 0.033 3.967 22 N -0.436 5.436 23 C -0.077 4.077 24 C -0.112 4.112 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.136 0.864 33 H 0.274 0.726 34 H 0.151 0.849 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.372 -14.392 -4.962 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.029 3.971 4 H 0.082 0.918 5 C -0.141 4.141 6 C -0.169 4.169 7 C -0.060 4.060 8 C -0.095 4.095 9 C -0.125 4.125 10 C -0.228 4.228 11 C 0.048 3.952 12 O -0.062 6.062 13 C -0.470 4.470 14 H 0.111 0.889 15 C -0.164 4.164 16 N -0.486 5.486 17 Si 0.768 3.232 18 H -0.197 1.197 19 H -0.200 1.200 20 H -0.190 1.190 21 C -0.131 4.131 22 N -0.146 5.146 23 C -0.115 4.115 24 C -0.150 4.150 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.154 0.846 33 H 0.084 0.916 34 H 0.169 0.831 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.535 -14.522 -3.982 18.378 hybrid contribution 0.830 1.080 -1.407 1.958 sum -9.705 -13.442 -5.388 17.433 Atomic orbital electron populations 1.22763 0.81417 1.02436 0.99968 1.87900 1.19395 1.28202 1.95100 1.22252 0.94969 0.83988 0.95849 0.91834 1.20879 0.99636 0.96641 0.96972 1.22312 0.97916 0.97085 0.99573 1.19296 0.97627 0.93725 0.95316 1.19358 1.02967 0.97347 0.89856 1.21766 0.96403 0.95656 0.98719 1.21480 1.04852 0.98302 0.98153 1.20551 0.93095 0.87653 0.93918 1.83956 1.50981 1.31398 1.39882 1.21385 1.21173 1.13588 0.90884 0.88881 1.25360 0.97010 0.95681 0.98348 1.70034 1.36340 1.19556 1.22671 0.85657 0.78862 0.79286 0.79351 1.19671 1.20029 1.19041 1.21744 0.99367 0.93855 0.98101 1.67375 1.15846 1.07753 1.23613 1.20355 1.02111 0.93775 0.95232 1.21642 0.95556 0.96964 1.00812 0.89881 0.94067 0.94155 0.91326 0.90187 0.85861 0.86168 0.84597 0.91628 0.83144 0.90735 0.90143 0.90995 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.83 101.05 1.09 1.34 16 2 O -0.39 -4.36 10.36 -35.23 -0.37 -4.73 16 3 C 0.09 0.97 2.65 -26.54 -0.07 0.90 16 4 H 0.06 0.68 7.78 -51.93 -0.40 0.28 16 5 C -0.10 -1.23 5.75 -28.17 -0.16 -1.40 16 6 C -0.15 -2.18 9.39 -36.38 -0.34 -2.52 16 7 C -0.06 -0.90 5.79 -102.84 -0.60 -1.50 16 8 C 0.04 0.73 6.68 -83.06 -0.55 0.18 16 9 C -0.11 -1.93 9.30 -39.09 -0.36 -2.30 16 10 C -0.20 -4.26 9.25 -39.16 -0.36 -4.62 16 11 C 0.11 2.49 6.67 -38.85 -0.26 2.23 16 12 O -0.16 -4.43 9.76 0.25 0.00 -4.43 16 13 C -0.39 -10.55 9.49 30.88 0.29 -10.26 16 14 H 0.09 2.29 5.25 -52.49 -0.28 2.01 16 15 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 16 N -0.85 -24.05 13.67 55.48 0.76 -23.29 16 17 Si 0.94 19.61 29.55 -169.99 -5.02 14.59 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 C 0.03 0.71 11.14 -17.36 -0.19 0.52 16 22 N -0.44 -8.97 9.04 -9.71 -0.09 -9.05 16 23 C -0.08 -0.94 4.77 -28.17 -0.13 -1.07 16 24 C -0.11 -1.23 5.66 -26.53 -0.15 -1.38 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.12 1.99 7.03 -52.49 -0.37 1.62 16 31 H 0.12 1.79 6.63 -52.49 -0.35 1.44 16 32 H 0.14 2.77 5.75 -52.49 -0.30 2.47 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.15 3.07 8.06 -52.49 -0.42 2.65 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.94 7.25 -51.93 -0.38 0.56 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 LS Contribution 317.69 15.07 4.79 4.79 Total: -1.00 -29.79 317.69 -6.83 -36.63 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.01 Total: 4.35 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -1.90 Total: -18.86 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.67 Total: -32.34 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.36 Total: -9.16 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.79 -6.83 -36.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243808887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.849 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds