Wall clock time and date at job start Mon Mar 30 2020 01:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99501 * 2 1 4 4 H 1.08997 * 109.79145 * 330.49471 * 3 2 1 5 5 C 1.53007 * 109.63269 * 90.99556 * 3 2 1 6 6 C 1.50091 * 110.19057 * 169.20589 * 5 3 2 7 7 C 1.31211 * 123.83711 * 343.28628 * 6 5 3 8 8 C 1.47680 * 118.07844 * 180.19447 * 7 6 5 9 9 C 1.39633 * 119.66765 * 185.20539 * 8 7 6 10 10 C 1.38169 * 119.13094 * 179.97438 * 9 8 7 11 11 C 1.39449 * 118.46990 * 0.02562 * 10 9 8 12 12 O 1.35710 * 120.36731 * 180.02562 * 11 10 9 13 13 C 1.34804 * 116.99771 * 354.49061 * 12 11 10 14 14 H 1.07997 * 120.00212 * 5.05591 * 13 12 11 15 15 C 1.38651 * 119.99704 * 185.06230 * 13 12 11 16 16 N 1.31556 * 120.00065 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99946 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47124 * 89.99582 * 17 15 13 19 19 H 1.48497 * 109.47184 * 209.99728 * 17 15 13 20 20 H 1.48494 * 109.47149 * 329.99725 * 17 15 13 21 21 C 1.38993 * 119.26499 * 0.27671 * 11 10 9 22 22 N 1.31631 * 120.80435 * 359.42403 * 21 11 10 23 23 C 1.50084 * 123.83846 * 359.91593 * 7 6 5 24 24 C 1.53017 * 110.13671 * 343.09488 * 23 7 6 25 25 H 1.09006 * 109.46766 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47212 * 300.00211 * 1 2 3 27 27 H 1.09000 * 109.46957 * 60.00374 * 1 2 3 28 28 H 1.08998 * 109.36197 * 289.60063 * 5 3 2 29 29 H 1.08997 * 109.36324 * 49.33062 * 5 3 2 30 30 H 1.07998 * 118.08191 * 163.05372 * 6 5 3 31 31 H 1.07993 * 120.43647 * 0.02562 * 9 8 7 32 32 H 1.08002 * 120.76119 * 179.97438 * 10 9 8 33 33 H 0.97008 * 120.00050 * 180.02562 * 16 15 13 34 34 H 1.07999 * 119.59530 * 179.72951 * 21 11 10 35 35 H 1.09002 * 109.35959 * 103.29865 * 23 7 6 36 36 H 1.09001 * 109.36215 * 223.02207 * 23 7 6 37 37 H 1.08999 * 109.62800 * 169.40119 * 24 23 7 38 38 H 1.08992 * 109.63196 * 289.79654 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3448 2.0057 -0.5051 5 6 2.2421 1.7650 1.4409 6 6 3.0842 3.0073 1.4593 7 6 3.8000 3.4199 0.4400 8 6 4.5863 4.6598 0.5993 9 6 5.2725 5.1885 -0.4959 10 6 6.0043 6.3493 -0.3345 11 6 6.0289 6.9502 0.9237 12 8 6.7349 8.0915 1.1252 13 6 7.4860 8.5360 0.0979 14 1 7.4437 8.0355 -0.8582 15 6 8.3130 9.6356 0.2687 16 7 8.3643 10.2456 1.4332 17 14 9.3545 10.2511 -1.1547 18 1 8.5878 11.2600 -1.9290 19 1 10.5965 10.8711 -0.6274 20 1 9.7070 9.1116 -2.0391 21 6 5.3267 6.3642 1.9703 22 7 4.6340 5.2607 1.7830 23 6 3.8712 2.7024 -0.8763 24 6 3.3626 1.2674 -0.7222 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.2817 1.9698 1.9139 29 1 2.7562 0.9782 1.9928 30 1 3.0990 3.5981 2.3632 31 1 5.2312 4.6970 -1.4566 32 1 6.5455 6.7809 -1.1635 33 1 8.9426 11.0152 1.5526 34 1 5.3457 6.8226 2.9480 35 1 3.2563 3.2271 -1.6076 36 1 4.9049 2.6822 -1.2214 37 1 3.2398 0.8149 -1.7062 38 1 4.0766 0.6866 -0.1385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243808887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:38 Heat of formation + Delta-G solvation = -53.766983 kcal Electronic energy + Delta-G solvation = -20260.803127 eV Core-core repulsion = 17068.164752 eV Total energy + Delta-G solvation = -3192.638374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42687 -40.14724 -39.01677 -37.24053 -34.43847 -33.20104 -32.56572 -31.61996 -29.47413 -27.61995 -27.06157 -25.06245 -24.17826 -23.21151 -22.40008 -20.11831 -19.23553 -18.70498 -17.87279 -17.31914 -17.01621 -16.29482 -16.10908 -15.90843 -15.65800 -15.26816 -15.16796 -14.78336 -14.29655 -14.15115 -14.10454 -13.81138 -13.62136 -13.44131 -13.11688 -13.03440 -12.74009 -12.49169 -12.15955 -11.97972 -11.69996 -11.59776 -11.51980 -10.99381 -10.60077 -10.51673 -10.32891 -10.20803 -8.79601 -8.53704 -6.21312 0.08098 0.38235 1.35613 1.40237 1.53015 1.58415 2.13360 2.82329 2.85468 3.13449 3.23526 3.50673 3.74199 3.86350 3.95371 4.03436 4.20479 4.24407 4.33029 4.44543 4.49685 4.54743 4.58357 4.65346 4.79681 4.83457 4.87760 4.92685 4.93550 5.00171 5.07132 5.14849 5.30332 5.31411 5.40712 5.67877 5.81137 5.91778 6.07760 6.31804 6.88938 7.09188 7.62912 8.67932 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.048696 B = 0.003141 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.858467 B = 8912.507608 C = 9371.303976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.089 3.911 4 H 0.072 0.928 5 C -0.102 4.102 6 C -0.133 4.133 7 C -0.078 4.078 8 C 0.055 3.945 9 C -0.101 4.101 10 C -0.198 4.198 11 C 0.074 3.926 12 O -0.213 6.213 13 C -0.418 4.418 14 H 0.107 0.893 15 C -0.018 4.018 16 N -0.913 5.913 17 Si 1.021 2.979 18 H -0.262 1.262 19 H -0.272 1.272 20 H -0.250 1.250 21 C 0.022 3.978 22 N -0.449 5.449 23 C -0.073 4.073 24 C -0.109 4.109 25 H 0.097 0.903 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.166 0.834 32 H 0.142 0.858 33 H 0.276 0.724 34 H 0.151 0.849 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.613 -17.003 -7.534 21.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C 0.031 3.969 4 H 0.090 0.910 5 C -0.139 4.139 6 C -0.153 4.153 7 C -0.079 4.079 8 C -0.081 4.081 9 C -0.120 4.120 10 C -0.224 4.224 11 C 0.020 3.980 12 O -0.117 6.117 13 C -0.494 4.494 14 H 0.125 0.875 15 C -0.217 4.217 16 N -0.550 5.550 17 Si 0.840 3.160 18 H -0.187 1.187 19 H -0.197 1.197 20 H -0.173 1.173 21 C -0.139 4.139 22 N -0.159 5.159 23 C -0.110 4.110 24 C -0.146 4.146 25 H 0.115 0.885 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.183 0.817 32 H 0.160 0.840 33 H 0.085 0.915 34 H 0.168 0.832 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.814 -17.175 -6.541 21.848 hybrid contribution 0.894 1.501 -0.529 1.825 sum -10.920 -15.674 -7.069 20.369 Atomic orbital electron populations 1.22970 0.79901 1.03729 1.00698 1.87882 1.21107 1.28042 1.95133 1.22210 0.95389 0.84350 0.94944 0.91044 1.20894 0.99618 0.95089 0.98269 1.22471 0.97025 0.97406 0.98362 1.19536 0.97871 0.92885 0.97564 1.20189 1.01164 0.97579 0.89198 1.22180 0.94833 0.94448 1.00517 1.21726 1.04606 0.98824 0.97228 1.20942 0.93664 0.87830 0.95583 1.83943 1.53255 1.33590 1.40924 1.21896 1.21748 1.14290 0.91462 0.87535 1.26648 0.98120 0.95582 1.01354 1.70177 1.38463 1.20919 1.25444 0.84553 0.76754 0.79047 0.75683 1.18696 1.19692 1.17337 1.21839 0.99573 0.94368 0.98126 1.67489 1.16091 1.07439 1.24854 1.20394 1.03125 0.94173 0.93333 1.21616 0.95198 0.96089 1.01717 0.88451 0.93592 0.93155 0.90027 0.89956 0.87880 0.81696 0.83997 0.91524 0.83175 0.89066 0.89326 0.89213 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.83 113.37 1.23 1.53 16 2 O -0.40 -7.71 10.36 -148.98 -1.54 -9.25 16 3 C 0.09 1.66 2.65 30.72 0.08 1.74 16 4 H 0.07 1.23 7.78 -2.39 -0.02 1.21 16 5 C -0.10 -2.11 5.75 29.66 0.17 -1.94 16 6 C -0.13 -3.57 9.39 25.25 0.24 -3.34 16 7 C -0.08 -2.16 5.79 -17.81 -0.10 -2.27 16 8 C 0.05 1.95 6.68 41.83 0.28 2.23 16 9 C -0.10 -3.42 9.30 22.59 0.21 -3.21 16 10 C -0.20 -8.22 9.25 22.55 0.21 -8.01 16 11 C 0.07 3.61 6.67 22.74 0.15 3.76 16 12 O -0.21 -12.35 9.76 -22.04 -0.22 -12.57 16 13 C -0.42 -23.22 9.49 67.92 0.64 -22.57 16 14 H 0.11 5.31 5.25 -2.91 -0.02 5.30 16 15 C -0.02 -0.99 5.49 84.83 0.47 -0.52 16 16 N -0.91 -54.23 13.67 21.61 0.30 -53.93 16 17 Si 1.02 40.76 29.55 68.60 2.03 42.79 16 18 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 19 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 20 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 21 C 0.02 0.98 11.14 84.90 0.95 1.92 16 22 N -0.45 -18.39 9.04 -184.63 -1.67 -20.06 16 23 C -0.07 -1.46 4.77 29.66 0.14 -1.32 16 24 C -0.11 -1.95 5.66 30.72 0.17 -1.78 16 25 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.05 0.56 8.09 -2.39 -0.02 0.54 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.10 3.22 7.03 -2.91 -0.02 3.20 16 31 H 0.17 4.13 6.63 -2.91 -0.02 4.11 16 32 H 0.14 5.68 5.75 -2.91 -0.02 5.66 16 33 H 0.28 14.96 8.31 -92.70 -0.77 14.19 16 34 H 0.15 6.56 8.06 -2.91 -0.02 6.53 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.65 7.25 -2.39 -0.02 1.63 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.30 8.12 -2.39 -0.02 1.28 16 Total: -1.00 -67.95 317.69 4.79 -63.16 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 1.06 Total: 23.65 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 4.84 Total: -33.78 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -1.37 Total: -73.99 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -1.76 Total: -21.82 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -67.95 4.79 -63.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243808887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.388 kcal (2) G-P(sol) polarization free energy of solvation -67.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds