Wall clock time and date at job start Mon Mar 30 2020 02:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86801 * 119.99508 * 2 1 4 4 H 1.48501 * 109.47346 * 239.99746 * 3 2 1 5 5 H 1.48504 * 109.47056 * 119.99766 * 3 2 1 6 6 H 1.48499 * 109.47423 * 0.02562 * 3 2 1 7 7 C 1.38983 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99664 * 355.82840 * 7 2 1 9 9 N 1.37321 * 119.99820 * 175.83311 * 7 2 1 10 10 C 1.36499 * 126.06486 * 185.54142 * 9 7 2 11 11 C 1.35679 * 107.50551 * 179.89538 * 10 9 7 12 12 N 1.40593 * 126.08297 * 180.13700 * 11 10 9 13 13 C 1.34776 * 120.00187 * 180.29938 * 12 11 10 14 14 O 1.21300 * 120.00088 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99886 * 179.97438 * 13 12 11 16 16 H 1.08995 * 115.55762 * 60.31389 * 15 13 12 17 17 C 1.53087 * 117.50975 * 206.09076 * 15 13 12 18 18 C 1.52551 * 117.51002 * 274.58924 * 15 13 12 19 19 C 1.53878 * 120.82239 * 142.33503 * 18 15 13 20 20 C 1.54985 * 104.06102 * 192.36898 * 19 18 15 21 21 C 1.54925 * 102.82537 * 37.56709 * 20 19 18 22 22 C 1.53486 * 121.08839 * 2.97160 * 18 15 13 23 23 C 1.40647 * 107.83701 * 0.36557 * 11 10 9 24 24 N 1.30903 * 108.38966 * 359.77207 * 23 11 10 25 25 H 0.97001 * 119.99497 * 185.04626 * 1 2 3 26 26 H 1.08001 * 126.24680 * 0.03454 * 10 9 7 27 27 H 0.97003 * 119.99837 * 0.29311 * 12 11 10 28 28 H 1.09000 * 117.51333 * 214.91410 * 17 15 13 29 29 H 1.09002 * 117.50881 * 0.02562 * 17 15 13 30 30 H 1.08998 * 110.51004 * 311.01419 * 19 18 15 31 31 H 1.08996 * 110.50934 * 73.72499 * 19 18 15 32 32 H 1.09000 * 110.74415 * 279.22948 * 20 19 18 33 33 H 1.09002 * 110.74094 * 155.89954 * 20 19 18 34 34 H 1.09004 * 110.48029 * 203.59448 * 21 20 19 35 35 H 1.08998 * 110.48289 * 80.96138 * 21 20 19 36 36 H 1.08998 * 110.06711 * 263.29931 * 22 18 15 37 37 H 1.08998 * 110.06759 * 24.77433 * 22 18 15 38 38 H 1.08003 * 125.80633 * 179.74859 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1007 1.6966 -1.2125 5 1 3.1006 1.6966 1.2126 6 1 1.2818 2.7465 0.0006 7 6 2.0080 -1.2036 0.0005 8 1 1.4701 -2.1376 0.0690 9 7 3.3785 -1.2051 -0.0859 10 6 4.1751 -2.3073 -0.2023 11 6 5.4607 -1.8775 -0.2598 12 7 6.6009 -2.6906 -0.3841 13 6 7.8265 -2.1313 -0.4236 14 8 7.9458 -0.9263 -0.3525 15 6 9.0487 -3.0030 -0.5562 16 1 9.0939 -3.6155 -1.4566 17 6 10.3685 -2.4593 -0.0030 18 6 9.6404 -3.5862 0.7232 19 6 10.2191 -5.0118 0.7458 20 6 10.4052 -5.3188 2.2535 21 6 9.1654 -4.6484 2.8966 22 6 8.9729 -3.3493 2.0849 23 6 5.4503 -0.4741 -0.1677 24 7 4.2075 -0.0763 -0.0641 25 1 -0.4849 -0.8368 0.0739 26 1 3.8426 -3.3341 -0.2436 27 1 6.5055 -3.6543 -0.4413 28 1 11.2824 -2.7139 -0.5397 29 1 10.3525 -1.4712 0.4571 30 1 9.5185 -5.7156 0.2964 31 1 11.1780 -5.0430 0.2285 32 1 11.3249 -4.8696 2.6283 33 1 10.3989 -6.3941 2.4322 34 1 9.3569 -4.4184 3.9448 35 1 8.2908 -5.2917 2.7999 36 1 9.4521 -2.5144 2.5961 37 1 7.9107 -3.1453 1.9503 38 1 6.3198 0.1664 -0.1800 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252474505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:31 Heat of formation + Delta-G solvation = 47.916548 kcal Electronic energy + Delta-G solvation = -20900.420484 eV Core-core repulsion = 17744.484189 eV Total energy + Delta-G solvation = -3155.936295 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49647 -39.69521 -37.97350 -34.49296 -34.11960 -33.38322 -30.66418 -28.96574 -28.47047 -25.95021 -24.88048 -23.49699 -21.31971 -20.98001 -20.00058 -19.85321 -18.83282 -17.98767 -16.64841 -16.25680 -15.95814 -15.49478 -15.01155 -14.30817 -14.09938 -13.57612 -13.52635 -13.44611 -13.34297 -12.97517 -12.49807 -12.38523 -12.12856 -11.76592 -11.33052 -11.23785 -11.11955 -10.90012 -10.78685 -10.76667 -10.38591 -10.11229 -9.92833 -9.86821 -9.46190 -9.27164 -8.55241 -8.27288 -7.32711 -7.03787 -4.47524 2.63503 3.08603 3.34334 3.56730 3.65504 3.74670 3.93126 4.04830 4.20157 4.32328 4.40507 4.44942 4.64962 4.71151 4.93138 4.95807 5.04595 5.25720 5.27865 5.43821 5.55068 5.61758 5.66954 5.70106 5.77502 5.92553 5.94150 5.97547 6.02067 6.12422 6.14778 6.17778 6.64848 6.72580 6.91627 7.35290 7.69396 8.00163 8.07716 8.31023 8.70210 8.92880 9.19225 10.12564 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033545 B = 0.004088 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.509473 B = 6846.848162 C = 7186.959690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.038 3.962 3 Si 1.125 2.875 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.315 1.315 7 C -0.378 4.378 8 H 0.114 0.886 9 N -0.149 5.149 10 C -0.062 4.062 11 C -0.051 4.051 12 N -0.622 5.622 13 C 0.533 3.467 14 O -0.535 6.535 15 C -0.173 4.173 16 H 0.125 0.875 17 C -0.134 4.134 18 C -0.108 4.108 19 C -0.089 4.089 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.096 4.096 23 C 0.006 3.994 24 N -0.360 5.360 25 H 0.279 0.721 26 H 0.152 0.848 27 H 0.400 0.600 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.373 -11.940 2.059 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.177 4.177 3 Si 0.956 3.044 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.246 1.246 7 C -0.510 4.510 8 H 0.131 0.869 9 N 0.086 4.914 10 C -0.215 4.215 11 C -0.156 4.156 12 N -0.265 5.265 13 C 0.319 3.681 14 O -0.412 6.412 15 C -0.194 4.194 16 H 0.143 0.857 17 C -0.171 4.171 18 C -0.108 4.108 19 C -0.126 4.126 20 C -0.159 4.159 21 C -0.159 4.159 22 C -0.133 4.133 23 C -0.166 4.166 24 N -0.195 5.195 25 H 0.090 0.910 26 H 0.170 0.830 27 H 0.234 0.766 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 17.387 -8.497 2.159 19.472 hybrid contribution 0.420 -3.281 -0.185 3.313 sum 17.808 -11.778 1.974 21.441 Atomic orbital electron populations 1.70923 1.06254 1.31681 1.37080 1.27002 0.95731 1.04168 0.90755 0.82473 0.71350 0.70666 0.79884 1.20545 1.20681 1.24608 1.21170 0.76655 0.98153 1.55033 0.86872 1.44761 1.05459 1.02640 1.38586 1.21298 0.89268 0.92958 1.17933 1.17167 0.85227 0.90756 1.22442 1.42495 1.03952 1.09095 1.70918 1.19429 0.83138 0.88068 0.77485 1.90578 1.85887 1.14779 1.49944 1.22265 0.94047 1.03660 0.99444 0.85719 1.23028 0.93653 0.98668 1.01801 1.21854 1.01741 0.95119 0.92121 1.21928 1.00277 0.93487 0.96943 1.22469 0.98369 1.00157 0.94934 1.22342 0.98101 0.96455 0.99043 1.21713 1.00919 0.97997 0.92681 1.23684 0.94661 0.92832 1.05426 1.76083 1.01264 1.08960 1.33190 0.90985 0.83050 0.76640 0.88124 0.87627 0.90972 0.91435 0.91417 0.91537 0.91595 0.91472 0.91278 0.90980 0.79906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.19 13.68 55.49 0.76 -22.43 16 2 C 0.04 1.06 5.50 -17.50 -0.10 0.96 16 3 Si 1.12 29.01 25.66 -169.99 -4.36 24.65 16 4 H -0.28 -7.30 6.91 56.52 0.39 -6.91 16 5 H -0.28 -7.29 7.03 56.52 0.40 -6.89 16 6 H -0.32 -7.90 7.11 56.52 0.40 -7.50 16 7 C -0.38 -10.31 10.59 -14.82 -0.16 -10.46 16 8 H 0.11 2.98 8.05 -52.49 -0.42 2.56 16 9 N -0.15 -3.92 3.69 -11.41 -0.04 -3.96 16 10 C -0.06 -1.39 11.49 -16.39 -0.19 -1.57 16 11 C -0.05 -1.10 6.90 -83.84 -0.58 -1.67 16 12 N -0.62 -10.31 5.41 -10.00 -0.05 -10.37 16 13 C 0.53 8.75 6.25 -10.98 -0.07 8.68 16 14 O -0.53 -10.86 13.73 5.54 0.08 -10.79 16 15 C -0.17 -2.03 6.04 -91.95 -0.56 -2.58 16 16 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 17 C -0.13 -1.44 9.75 -26.91 -0.26 -1.70 16 18 C -0.11 -1.09 2.44 -154.25 -0.38 -1.47 16 19 C -0.09 -0.70 6.58 -25.23 -0.17 -0.86 16 20 C -0.12 -0.91 6.91 -24.67 -0.17 -1.08 16 21 C -0.12 -1.09 6.84 -24.99 -0.17 -1.26 16 22 C -0.10 -1.07 6.19 -25.75 -0.16 -1.23 16 23 C 0.01 0.14 10.85 -17.04 -0.18 -0.04 16 24 N -0.36 -9.68 7.15 30.80 0.22 -9.46 16 25 H 0.28 7.37 8.72 -40.82 -0.36 7.01 16 26 H 0.15 2.85 8.06 -52.49 -0.42 2.43 16 27 H 0.40 5.17 8.83 -40.82 -0.36 4.81 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.11 1.31 7.91 -51.93 -0.41 0.90 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.97 7.20 -51.93 -0.37 0.59 16 38 H 0.18 4.39 5.92 -52.48 -0.31 4.08 16 LS Contribution 314.64 15.07 4.74 4.74 Total: -1.00 -31.66 314.64 -7.07 -38.73 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.27 Total: 3.18 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -3.14 Total: -14.29 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.88 Total: -46.22 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 29.01 SS G_CDS: -4.36 Total: 24.65 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.66 -7.07 -38.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252474505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.644 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds