Wall clock time and date at job start Mon Mar 30 2020 02:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86801 * 119.99508 * 2 1 4 4 H 1.48501 * 109.47346 * 239.99746 * 3 2 1 5 5 H 1.48504 * 109.47056 * 119.99766 * 3 2 1 6 6 H 1.48499 * 109.47423 * 0.02562 * 3 2 1 7 7 C 1.38983 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99664 * 355.82840 * 7 2 1 9 9 N 1.37321 * 119.99820 * 175.83311 * 7 2 1 10 10 C 1.36499 * 126.06486 * 185.54142 * 9 7 2 11 11 C 1.35679 * 107.50551 * 179.89538 * 10 9 7 12 12 N 1.40593 * 126.08297 * 180.13700 * 11 10 9 13 13 C 1.34776 * 120.00187 * 180.29938 * 12 11 10 14 14 O 1.21300 * 120.00088 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99886 * 179.97438 * 13 12 11 16 16 H 1.08995 * 115.55762 * 60.31389 * 15 13 12 17 17 C 1.53087 * 117.50975 * 206.09076 * 15 13 12 18 18 C 1.52551 * 117.51002 * 274.58924 * 15 13 12 19 19 C 1.53878 * 120.82239 * 142.33503 * 18 15 13 20 20 C 1.54985 * 104.06102 * 192.36898 * 19 18 15 21 21 C 1.54925 * 102.82537 * 37.56709 * 20 19 18 22 22 C 1.53486 * 121.08839 * 2.97160 * 18 15 13 23 23 C 1.40647 * 107.83701 * 0.36557 * 11 10 9 24 24 N 1.30903 * 108.38966 * 359.77207 * 23 11 10 25 25 H 0.97001 * 119.99497 * 185.04626 * 1 2 3 26 26 H 1.08001 * 126.24680 * 0.03454 * 10 9 7 27 27 H 0.97003 * 119.99837 * 0.29311 * 12 11 10 28 28 H 1.09000 * 117.51333 * 214.91410 * 17 15 13 29 29 H 1.09002 * 117.50881 * 0.02562 * 17 15 13 30 30 H 1.08998 * 110.51004 * 311.01419 * 19 18 15 31 31 H 1.08996 * 110.50934 * 73.72499 * 19 18 15 32 32 H 1.09000 * 110.74415 * 279.22948 * 20 19 18 33 33 H 1.09002 * 110.74094 * 155.89954 * 20 19 18 34 34 H 1.09004 * 110.48029 * 203.59448 * 21 20 19 35 35 H 1.08998 * 110.48289 * 80.96138 * 21 20 19 36 36 H 1.08998 * 110.06711 * 263.29931 * 22 18 15 37 37 H 1.08998 * 110.06759 * 24.77433 * 22 18 15 38 38 H 1.08003 * 125.80633 * 179.74859 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1007 1.6966 -1.2125 5 1 3.1006 1.6966 1.2126 6 1 1.2818 2.7465 0.0006 7 6 2.0080 -1.2036 0.0005 8 1 1.4701 -2.1376 0.0690 9 7 3.3785 -1.2051 -0.0859 10 6 4.1751 -2.3073 -0.2023 11 6 5.4607 -1.8775 -0.2598 12 7 6.6009 -2.6906 -0.3841 13 6 7.8265 -2.1313 -0.4236 14 8 7.9458 -0.9263 -0.3525 15 6 9.0487 -3.0030 -0.5562 16 1 9.0939 -3.6155 -1.4566 17 6 10.3685 -2.4593 -0.0030 18 6 9.6404 -3.5862 0.7232 19 6 10.2191 -5.0118 0.7458 20 6 10.4052 -5.3188 2.2535 21 6 9.1654 -4.6484 2.8966 22 6 8.9729 -3.3493 2.0849 23 6 5.4503 -0.4741 -0.1677 24 7 4.2075 -0.0763 -0.0641 25 1 -0.4849 -0.8368 0.0739 26 1 3.8426 -3.3341 -0.2436 27 1 6.5055 -3.6543 -0.4413 28 1 11.2824 -2.7139 -0.5397 29 1 10.3525 -1.4712 0.4571 30 1 9.5185 -5.7156 0.2964 31 1 11.1780 -5.0430 0.2285 32 1 11.3249 -4.8696 2.6283 33 1 10.3989 -6.3941 2.4322 34 1 9.3569 -4.4184 3.9448 35 1 8.2908 -5.2917 2.7999 36 1 9.4521 -2.5144 2.5961 37 1 7.9107 -3.1453 1.9503 38 1 6.3198 0.1664 -0.1800 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252474505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:30 Heat of formation + Delta-G solvation = 28.346972 kcal Electronic energy + Delta-G solvation = -20901.269084 eV Core-core repulsion = 17744.484189 eV Total energy + Delta-G solvation = -3156.784895 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.12490 -41.03930 -39.13502 -36.14853 -35.23041 -35.01476 -32.63405 -30.32061 -29.62024 -27.04399 -26.29899 -24.89008 -23.06382 -21.84095 -21.69242 -21.13589 -20.11602 -19.56182 -18.22310 -17.68498 -16.90526 -16.84066 -16.22590 -15.90515 -15.50784 -15.40471 -15.25120 -15.01437 -14.39229 -14.24108 -13.83766 -13.59727 -13.29703 -13.06428 -12.87357 -12.74681 -12.02379 -11.99188 -11.97943 -11.87377 -11.82071 -11.44659 -11.40060 -11.25372 -10.89728 -10.59882 -10.46332 -10.30806 -9.41011 -8.79399 -6.53817 0.98069 1.39954 1.48170 1.69247 1.88036 1.96128 2.24119 2.27372 2.52586 2.77369 2.84359 3.48804 3.65575 3.82124 3.90091 4.03783 4.22181 4.28658 4.29247 4.39284 4.57523 4.75871 4.80010 4.82332 4.86498 4.92274 4.93628 5.02437 5.09714 5.15138 5.25093 5.26482 5.28873 5.35814 5.39836 5.51679 5.78215 6.07856 6.35995 6.65866 6.99369 7.17701 7.37244 8.07294 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033545 B = 0.004088 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.509473 B = 6846.848162 C = 7186.959690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.010 3.990 3 Si 1.154 2.846 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.308 1.308 7 C -0.392 4.392 8 H 0.117 0.883 9 N -0.181 5.181 10 C -0.044 4.044 11 C -0.032 4.032 12 N -0.614 5.614 13 C 0.531 3.469 14 O -0.577 6.577 15 C -0.176 4.176 16 H 0.157 0.843 17 C -0.135 4.135 18 C -0.095 4.095 19 C -0.084 4.084 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.103 4.103 23 C -0.010 4.010 24 N -0.389 5.389 25 H 0.281 0.719 26 H 0.192 0.808 27 H 0.422 0.578 28 H 0.131 0.869 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.973 -14.808 1.657 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.201 4.201 3 Si 0.986 3.014 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.238 1.238 7 C -0.523 4.523 8 H 0.135 0.865 9 N 0.051 4.949 10 C -0.196 4.196 11 C -0.138 4.138 12 N -0.259 5.259 13 C 0.320 3.680 14 O -0.456 6.456 15 C -0.197 4.197 16 H 0.174 0.826 17 C -0.173 4.173 18 C -0.095 4.095 19 C -0.121 4.121 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.140 4.140 23 C -0.183 4.183 24 N -0.224 5.224 25 H 0.092 0.908 26 H 0.209 0.791 27 H 0.259 0.741 28 H 0.149 0.851 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 19.976 -11.405 1.759 23.070 hybrid contribution -0.115 -2.468 -0.029 2.471 sum 19.861 -13.874 1.730 24.289 Atomic orbital electron populations 1.70913 1.06439 1.31894 1.39510 1.27390 0.96074 1.05432 0.91178 0.82023 0.70529 0.70142 0.78695 1.21831 1.21831 1.23820 1.21160 0.77361 0.98111 1.55702 0.86509 1.44802 1.05373 1.03367 1.41379 1.22051 0.89011 0.93908 1.14628 1.17268 0.86734 0.90199 1.19598 1.42497 1.02685 1.09790 1.70893 1.20361 0.84108 0.88121 0.75436 1.90563 1.86538 1.17111 1.51402 1.22273 0.91858 1.03877 1.01682 0.82555 1.23128 0.94322 0.97902 1.01910 1.21939 1.00564 0.96589 0.90431 1.21982 1.01292 0.91458 0.97348 1.22478 0.97452 1.01035 0.94545 1.22343 0.99235 0.95292 0.98947 1.21749 0.99175 0.99008 0.94097 1.23900 0.94027 0.94602 1.05782 1.75952 1.02292 1.10476 1.33726 0.90818 0.79115 0.74102 0.85102 0.90069 0.89755 0.89605 0.91106 0.89851 0.91450 0.91243 0.92590 0.93627 0.79981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.57 13.68 21.66 0.30 -48.27 16 2 C 0.01 0.56 5.50 84.95 0.47 1.03 16 3 Si 1.15 60.45 25.66 68.60 1.76 62.21 16 4 H -0.29 -15.56 6.91 99.48 0.69 -14.87 16 5 H -0.29 -15.48 7.03 99.48 0.70 -14.78 16 6 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 7 C -0.39 -21.52 10.59 84.01 0.89 -20.63 16 8 H 0.12 6.15 8.05 -2.91 -0.02 6.13 16 9 N -0.18 -9.51 3.69 -190.01 -0.70 -10.21 16 10 C -0.04 -1.87 11.49 83.37 0.96 -0.92 16 11 C -0.03 -1.34 6.90 37.73 0.26 -1.08 16 12 N -0.61 -18.92 5.41 -303.93 -1.64 -20.56 16 13 C 0.53 16.57 6.25 87.66 0.55 17.12 16 14 O -0.58 -23.31 13.73 -3.09 -0.04 -23.35 16 15 C -0.18 -3.58 6.04 -11.66 -0.07 -3.65 16 16 H 0.16 2.25 8.14 -2.39 -0.02 2.24 16 17 C -0.14 -2.54 9.75 30.48 0.30 -2.24 16 18 C -0.09 -1.63 2.44 -52.02 -0.13 -1.75 16 19 C -0.08 -0.92 6.58 31.57 0.21 -0.71 16 20 C -0.12 -1.31 6.91 31.93 0.22 -1.09 16 21 C -0.12 -1.87 6.84 31.72 0.22 -1.65 16 22 C -0.10 -2.15 6.19 31.23 0.19 -1.96 16 23 C -0.01 -0.49 10.85 85.42 0.93 0.43 16 24 N -0.39 -21.15 7.15 -56.47 -0.40 -21.55 16 25 H 0.28 15.10 8.72 -92.71 -0.81 14.29 16 26 H 0.19 6.48 8.06 -2.91 -0.02 6.46 16 27 H 0.42 9.41 8.83 -92.71 -0.82 8.59 16 28 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.08 1.95 7.91 -2.39 -0.02 1.93 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.70 8.11 -2.39 -0.02 0.68 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.04 1.18 7.20 -2.39 -0.02 1.17 16 38 H 0.18 8.92 5.92 -2.91 -0.02 8.91 16 Total: -1.00 -70.15 314.64 4.44 -65.70 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.19 Total: 13.14 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 4.99 Total: -17.10 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -2.45 Total: -100.60 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.04 Total: -23.35 kcal Atomic # 14 Polarization: 60.45 SS G_CDS: 1.76 Total: 62.21 kcal Total: -70.15 4.44 -65.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252474505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.051 kcal (2) G-P(sol) polarization free energy of solvation -70.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds