Wall clock time and date at job start Mon Mar 30 2020 02:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86798 * 120.00131 * 2 1 4 4 H 1.48493 * 109.47260 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46946 * 119.99836 * 3 2 1 6 6 H 1.48500 * 109.47206 * 239.99752 * 3 2 1 7 7 C 1.38993 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99954 * 2.00181 * 7 2 1 9 9 N 1.37323 * 119.99969 * 181.99941 * 7 2 1 10 10 C 1.36488 * 126.06802 * 186.38445 * 9 7 2 11 11 C 1.35684 * 107.50684 * 179.84167 * 10 9 7 12 12 N 1.40594 * 126.08271 * 180.15932 * 11 10 9 13 13 C 1.34777 * 120.00093 * 180.28400 * 12 11 10 14 14 O 1.21309 * 119.99472 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99974 * 179.97438 * 13 12 11 16 16 H 1.09000 * 115.55449 * 34.41917 * 15 13 12 17 17 C 1.53085 * 117.51247 * 248.69495 * 15 13 12 18 18 C 1.52555 * 117.50696 * 180.13536 * 15 13 12 19 19 C 1.53870 * 120.82799 * 357.25466 * 18 15 13 20 20 C 1.54988 * 104.06054 * 192.35108 * 19 18 15 21 21 C 1.54926 * 102.82321 * 37.56937 * 20 19 18 22 22 C 1.53488 * 121.08896 * 217.87696 * 18 15 13 23 23 C 1.40651 * 107.83282 * 0.41761 * 11 10 9 24 24 N 1.30906 * 108.39176 * 359.74075 * 23 11 10 25 25 H 0.96997 * 120.00075 * 174.76008 * 1 2 3 26 26 H 1.07996 * 126.24707 * 359.97438 * 10 9 7 27 27 H 0.97002 * 119.99574 * 0.27869 * 12 11 10 28 28 H 1.09005 * 117.50516 * 359.97438 * 17 15 13 29 29 H 1.08990 * 117.51055 * 145.04698 * 17 15 13 30 30 H 1.08998 * 110.50979 * 310.99416 * 19 18 15 31 31 H 1.08994 * 110.51464 * 73.70669 * 19 18 15 32 32 H 1.08994 * 110.74501 * 279.23570 * 20 19 18 33 33 H 1.09006 * 110.89826 * 155.97479 * 20 19 18 34 34 H 1.08997 * 110.47991 * 203.59048 * 21 20 19 35 35 H 1.09006 * 110.59094 * 81.01738 * 21 20 19 36 36 H 1.08991 * 110.07269 * 263.32311 * 22 18 15 37 37 H 1.08999 * 110.06990 * 24.85888 * 22 18 15 38 38 H 1.08001 * 125.80626 * 179.71869 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 1.2821 2.7464 0.0006 5 1 3.1007 1.6963 1.2126 6 1 3.1008 1.6963 -1.2125 7 6 2.0079 -1.2038 0.0005 8 1 1.4683 -2.1388 -0.0317 9 7 3.3805 -1.2042 0.0420 10 6 4.1876 -2.2986 -0.0749 11 6 5.4719 -1.8701 0.0157 12 7 6.6210 -2.6768 -0.0582 13 6 7.8434 -2.1201 0.0533 14 8 7.9520 -0.9230 0.2169 15 6 9.0751 -2.9848 -0.0253 16 1 9.0093 -3.8365 -0.7024 17 6 9.8991 -3.1598 1.2529 18 6 10.4294 -2.2960 0.1111 19 6 10.5254 -0.7673 0.2579 20 6 12.0297 -0.4621 0.0433 21 6 12.4290 -1.4655 -1.0675 22 6 11.6347 -2.7447 -0.7267 23 6 5.4488 -0.4763 0.2026 24 7 4.2005 -0.0823 0.2179 25 1 -0.4850 -0.8365 -0.0767 26 1 3.8634 -3.3190 -0.2162 27 1 6.5340 -3.6339 -0.1893 28 1 9.5503 -2.6490 2.1505 29 1 10.3752 -4.1264 1.4167 30 1 9.9228 -0.2720 -0.5034 31 1 10.2116 -0.4590 1.2551 32 1 12.5958 -0.6506 0.9555 33 1 12.1739 0.5645 -0.2936 34 1 13.5007 -1.6622 -1.0364 35 1 12.1400 -1.0869 -2.0480 36 1 12.2571 -3.4289 -0.1501 37 1 11.2946 -3.2287 -1.6421 38 1 6.3137 0.1606 0.3149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252474506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:34 Heat of formation + Delta-G solvation = 50.204612 kcal Electronic energy + Delta-G solvation = -20777.544297 eV Core-core repulsion = 17621.707221 eV Total energy + Delta-G solvation = -3155.837077 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.48238 -39.70521 -37.84959 -34.41150 -34.16230 -33.37392 -30.65925 -28.76695 -28.52494 -25.87699 -24.79874 -23.52383 -21.34553 -20.78673 -20.13204 -19.82955 -18.72126 -18.06762 -16.64891 -16.26601 -15.49259 -15.42248 -14.82184 -14.60895 -14.00980 -13.67859 -13.51467 -13.41522 -13.29465 -12.86881 -12.48610 -12.36394 -12.21131 -11.74484 -11.23794 -11.08973 -10.94681 -10.91213 -10.77088 -10.63288 -10.34977 -10.06307 -9.93462 -9.81767 -9.46281 -9.13118 -8.52150 -8.28501 -7.32069 -7.02320 -4.47309 2.60258 3.06782 3.38268 3.56493 3.68304 3.75423 3.93016 4.08541 4.22332 4.35077 4.44451 4.53624 4.73968 4.79195 4.94207 5.04106 5.07262 5.21157 5.42176 5.54173 5.58610 5.66308 5.68903 5.79415 5.89474 5.90230 5.98401 6.04577 6.11495 6.13397 6.33509 6.50684 6.65749 6.73050 6.93475 7.35913 7.69943 8.00968 8.08497 8.31765 8.71716 8.93499 9.19900 10.13142 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.038472 B = 0.003865 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.633725 B = 7242.906389 C = 7767.310838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.038 3.962 3 Si 1.122 2.878 4 H -0.314 1.314 5 H -0.271 1.271 6 H -0.284 1.284 7 C -0.378 4.378 8 H 0.113 0.887 9 N -0.150 5.150 10 C -0.062 4.062 11 C -0.050 4.050 12 N -0.625 5.625 13 C 0.530 3.470 14 O -0.531 6.531 15 C -0.176 4.176 16 H 0.119 0.881 17 C -0.143 4.143 18 C -0.093 4.093 19 C -0.077 4.077 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.089 4.089 23 C 0.006 3.994 24 N -0.359 5.359 25 H 0.279 0.721 26 H 0.152 0.848 27 H 0.400 0.600 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.590 -8.025 -0.688 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.176 4.176 3 Si 0.953 3.047 4 H -0.245 1.245 5 H -0.198 1.198 6 H -0.212 1.212 7 C -0.510 4.510 8 H 0.131 0.869 9 N 0.085 4.915 10 C -0.215 4.215 11 C -0.155 4.155 12 N -0.267 5.267 13 C 0.317 3.683 14 O -0.408 6.408 15 C -0.198 4.198 16 H 0.137 0.863 17 C -0.181 4.181 18 C -0.093 4.093 19 C -0.114 4.114 20 C -0.166 4.166 21 C -0.160 4.160 22 C -0.126 4.126 23 C -0.166 4.166 24 N -0.194 5.194 25 H 0.090 0.910 26 H 0.169 0.831 27 H 0.233 0.767 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 19.590 -4.598 -0.397 20.127 hybrid contribution 0.341 -3.513 -0.287 3.541 sum 19.932 -8.111 -0.683 21.530 Atomic orbital electron populations 1.70911 1.06258 1.31692 1.37156 1.26999 0.95741 1.04152 0.90740 0.82535 0.71495 0.70733 0.79909 1.24516 1.19805 1.21156 1.21162 0.76506 0.98075 1.55288 0.86907 1.44769 1.05404 1.03223 1.38141 1.21317 0.89070 0.93416 1.17705 1.17177 0.84982 0.91210 1.22177 1.42497 1.03782 1.09918 1.70490 1.19470 0.83107 0.88015 0.77718 1.90567 1.85879 1.15084 1.49284 1.22225 0.91361 1.02425 1.03750 0.86317 1.23051 1.01511 1.01478 0.92027 1.21763 0.92005 0.95752 0.99818 1.21869 0.94807 0.91505 1.03201 1.22565 0.96881 0.98833 0.98300 1.22336 0.99143 0.95372 0.99152 1.21672 0.94470 0.97706 0.98761 1.23712 0.94610 0.92992 1.05294 1.76216 1.01515 1.09294 1.32408 0.90984 0.83061 0.76708 0.88165 0.88074 0.89674 0.91356 0.91842 0.91638 0.91868 0.91571 0.91436 0.91542 0.79841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.24 13.68 55.50 0.76 -22.48 16 2 C 0.04 1.06 5.50 -17.50 -0.10 0.97 16 3 Si 1.12 28.89 25.74 -169.99 -4.38 24.51 16 4 H -0.31 -7.87 7.11 56.52 0.40 -7.46 16 5 H -0.27 -7.07 6.75 56.52 0.38 -6.69 16 6 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.38 -10.33 10.60 -14.81 -0.16 -10.49 16 8 H 0.11 2.98 8.05 -52.49 -0.42 2.56 16 9 N -0.15 -3.95 3.67 -11.41 -0.04 -3.99 16 10 C -0.06 -1.40 11.49 -16.39 -0.19 -1.59 16 11 C -0.05 -1.09 6.90 -83.84 -0.58 -1.66 16 12 N -0.62 -10.32 5.47 -10.00 -0.05 -10.37 16 13 C 0.53 8.54 7.58 -10.99 -0.08 8.46 16 14 O -0.53 -10.21 10.86 5.53 0.06 -10.15 16 15 C -0.18 -2.04 6.05 -91.96 -0.56 -2.60 16 16 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 17 C -0.14 -1.45 9.95 -26.85 -0.27 -1.72 16 18 C -0.09 -1.01 2.45 -154.19 -0.38 -1.39 16 19 C -0.08 -0.95 4.77 -25.23 -0.12 -1.07 16 20 C -0.13 -1.25 6.91 -24.67 -0.17 -1.42 16 21 C -0.12 -1.06 6.84 -24.99 -0.17 -1.23 16 22 C -0.09 -0.78 6.55 -25.75 -0.17 -0.95 16 23 C 0.01 0.14 10.85 -17.04 -0.18 -0.04 16 24 N -0.36 -9.64 7.15 30.80 0.22 -9.42 16 25 H 0.28 7.39 8.72 -40.82 -0.36 7.03 16 26 H 0.15 2.86 8.06 -52.49 -0.42 2.43 16 27 H 0.40 5.07 8.83 -40.82 -0.36 4.71 16 28 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.26 6.97 -51.93 -0.36 0.90 16 31 H 0.07 0.93 8.01 -51.93 -0.42 0.51 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.18 4.33 5.92 -52.49 -0.31 4.02 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -31.32 311.80 -7.12 -38.45 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.27 Total: 3.48 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -3.12 Total: -14.73 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.88 Total: -46.27 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.06 Total: -10.15 kcal Atomic # 14 Polarization: 28.89 SS G_CDS: -4.38 Total: 24.51 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.32 -7.12 -38.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252474506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.653 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds