Wall clock time and date at job start Mon Mar 30 2020 02:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86798 * 120.00131 * 2 1 4 4 H 1.48493 * 109.47260 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46946 * 119.99836 * 3 2 1 6 6 H 1.48500 * 109.47206 * 239.99752 * 3 2 1 7 7 C 1.38993 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99954 * 2.00181 * 7 2 1 9 9 N 1.37323 * 119.99969 * 181.99941 * 7 2 1 10 10 C 1.36488 * 126.06802 * 186.38445 * 9 7 2 11 11 C 1.35684 * 107.50684 * 179.84167 * 10 9 7 12 12 N 1.40594 * 126.08271 * 180.15932 * 11 10 9 13 13 C 1.34777 * 120.00093 * 180.28400 * 12 11 10 14 14 O 1.21309 * 119.99472 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99974 * 179.97438 * 13 12 11 16 16 H 1.09000 * 115.55449 * 34.41917 * 15 13 12 17 17 C 1.53085 * 117.51247 * 248.69495 * 15 13 12 18 18 C 1.52555 * 117.50696 * 180.13536 * 15 13 12 19 19 C 1.53870 * 120.82799 * 357.25466 * 18 15 13 20 20 C 1.54988 * 104.06054 * 192.35108 * 19 18 15 21 21 C 1.54926 * 102.82321 * 37.56937 * 20 19 18 22 22 C 1.53488 * 121.08896 * 217.87696 * 18 15 13 23 23 C 1.40651 * 107.83282 * 0.41761 * 11 10 9 24 24 N 1.30906 * 108.39176 * 359.74075 * 23 11 10 25 25 H 0.96997 * 120.00075 * 174.76008 * 1 2 3 26 26 H 1.07996 * 126.24707 * 359.97438 * 10 9 7 27 27 H 0.97002 * 119.99574 * 0.27869 * 12 11 10 28 28 H 1.09005 * 117.50516 * 359.97438 * 17 15 13 29 29 H 1.08990 * 117.51055 * 145.04698 * 17 15 13 30 30 H 1.08998 * 110.50979 * 310.99416 * 19 18 15 31 31 H 1.08994 * 110.51464 * 73.70669 * 19 18 15 32 32 H 1.08994 * 110.74501 * 279.23570 * 20 19 18 33 33 H 1.09006 * 110.89826 * 155.97479 * 20 19 18 34 34 H 1.08997 * 110.47991 * 203.59048 * 21 20 19 35 35 H 1.09006 * 110.59094 * 81.01738 * 21 20 19 36 36 H 1.08991 * 110.07269 * 263.32311 * 22 18 15 37 37 H 1.08999 * 110.06990 * 24.85888 * 22 18 15 38 38 H 1.08001 * 125.80626 * 179.71869 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 1.2821 2.7464 0.0006 5 1 3.1007 1.6963 1.2126 6 1 3.1008 1.6963 -1.2125 7 6 2.0079 -1.2038 0.0005 8 1 1.4683 -2.1388 -0.0317 9 7 3.3805 -1.2042 0.0420 10 6 4.1876 -2.2986 -0.0749 11 6 5.4719 -1.8701 0.0157 12 7 6.6210 -2.6768 -0.0582 13 6 7.8434 -2.1201 0.0533 14 8 7.9520 -0.9230 0.2169 15 6 9.0751 -2.9848 -0.0253 16 1 9.0093 -3.8365 -0.7024 17 6 9.8991 -3.1598 1.2529 18 6 10.4294 -2.2960 0.1111 19 6 10.5254 -0.7673 0.2579 20 6 12.0297 -0.4621 0.0433 21 6 12.4290 -1.4655 -1.0675 22 6 11.6347 -2.7447 -0.7267 23 6 5.4488 -0.4763 0.2026 24 7 4.2005 -0.0823 0.2179 25 1 -0.4850 -0.8365 -0.0767 26 1 3.8634 -3.3190 -0.2162 27 1 6.5340 -3.6339 -0.1893 28 1 9.5503 -2.6490 2.1505 29 1 10.3752 -4.1264 1.4167 30 1 9.9228 -0.2720 -0.5034 31 1 10.2116 -0.4590 1.2551 32 1 12.5958 -0.6506 0.9555 33 1 12.1739 0.5645 -0.2936 34 1 13.5007 -1.6622 -1.0364 35 1 12.1400 -1.0869 -2.0480 36 1 12.2571 -3.4289 -0.1501 37 1 11.2946 -3.2287 -1.6421 38 1 6.3137 0.1606 0.3149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252474506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:33 Heat of formation + Delta-G solvation = 31.029432 kcal Electronic energy + Delta-G solvation = -20778.375796 eV Core-core repulsion = 17621.707221 eV Total energy + Delta-G solvation = -3156.668575 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.09799 -41.05086 -39.00934 -36.08922 -35.24077 -34.99962 -32.62145 -30.29975 -29.55090 -27.07139 -26.18795 -24.85891 -23.09581 -21.74552 -21.55150 -21.38190 -19.92779 -19.67571 -18.16661 -17.74704 -16.87860 -16.40301 -16.12525 -15.94180 -15.50008 -15.41277 -15.22642 -15.06856 -14.39796 -14.29036 -13.78611 -13.59163 -13.34967 -13.04291 -12.88689 -12.70727 -11.99779 -11.94896 -11.92893 -11.87517 -11.71550 -11.44161 -11.35444 -11.21075 -10.77802 -10.55857 -10.33983 -10.31213 -9.39849 -8.76633 -6.53339 0.98597 1.40447 1.48042 1.69556 1.89184 1.98340 2.23525 2.29888 2.54147 2.84239 2.89037 3.52972 3.68777 3.87115 3.98655 4.07599 4.23273 4.29379 4.33593 4.38377 4.65388 4.78171 4.81159 4.83741 4.85830 4.95140 4.96543 5.09534 5.12077 5.15707 5.25301 5.29063 5.37103 5.40358 5.49257 5.56231 5.79578 6.09355 6.37689 6.70799 7.00512 7.19730 7.42275 8.07906 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.038472 B = 0.003865 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.633725 B = 7242.906389 C = 7767.310838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.009 3.991 3 Si 1.152 2.848 4 H -0.307 1.307 5 H -0.283 1.283 6 H -0.295 1.295 7 C -0.393 4.393 8 H 0.116 0.884 9 N -0.183 5.183 10 C -0.045 4.045 11 C -0.032 4.032 12 N -0.618 5.618 13 C 0.525 3.475 14 O -0.566 6.566 15 C -0.179 4.179 16 H 0.153 0.847 17 C -0.127 4.127 18 C -0.099 4.099 19 C -0.081 4.081 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.083 4.083 23 C -0.009 4.009 24 N -0.389 5.389 25 H 0.281 0.719 26 H 0.191 0.809 27 H 0.422 0.578 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.533 -10.762 -0.964 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.201 4.201 3 Si 0.984 3.016 4 H -0.238 1.238 5 H -0.210 1.210 6 H -0.223 1.223 7 C -0.524 4.524 8 H 0.134 0.866 9 N 0.049 4.951 10 C -0.197 4.197 11 C -0.137 4.137 12 N -0.263 5.263 13 C 0.314 3.686 14 O -0.445 6.445 15 C -0.199 4.199 16 H 0.171 0.829 17 C -0.164 4.164 18 C -0.100 4.100 19 C -0.118 4.118 20 C -0.163 4.163 21 C -0.159 4.159 22 C -0.120 4.120 23 C -0.182 4.182 24 N -0.224 5.224 25 H 0.091 0.909 26 H 0.208 0.792 27 H 0.259 0.741 28 H 0.102 0.898 29 H 0.155 0.845 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 22.526 -7.372 -0.678 23.711 hybrid contribution -0.287 -2.721 -0.175 2.742 sum 22.239 -10.092 -0.853 24.437 Atomic orbital electron populations 1.70904 1.06458 1.31874 1.39675 1.27407 0.96088 1.05466 0.91165 0.82076 0.70662 0.70145 0.78749 1.23763 1.21002 1.22315 1.21140 0.77261 0.97994 1.55962 0.86625 1.44806 1.05309 1.04003 1.41010 1.22076 0.88854 0.94295 1.14519 1.17282 0.86552 0.90655 1.19232 1.42518 1.02440 1.10666 1.70706 1.20422 0.84076 0.88167 0.75920 1.90569 1.86448 1.17153 1.50304 1.22259 0.89039 1.02753 1.05895 0.82931 1.23155 1.00072 1.02585 0.90598 1.21902 0.92531 0.94609 1.00954 1.21782 0.96263 0.93080 1.00723 1.22547 0.94907 0.99341 0.99464 1.22356 1.00447 0.94953 0.98150 1.21695 0.93457 0.97891 0.98984 1.23947 0.93965 0.94745 1.05575 1.76084 1.02591 1.10794 1.32948 0.90858 0.79158 0.74068 0.89825 0.84524 0.92890 0.93632 0.90763 0.91891 0.89832 0.92161 0.89278 0.90633 0.79802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.82 13.68 21.66 0.30 -48.52 16 2 C 0.01 0.52 5.50 84.95 0.47 0.99 16 3 Si 1.15 60.28 25.74 68.60 1.77 62.05 16 4 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 5 H -0.28 -15.08 6.75 99.48 0.67 -14.40 16 6 H -0.30 -15.71 7.11 99.48 0.71 -15.01 16 7 C -0.39 -21.60 10.60 84.01 0.89 -20.71 16 8 H 0.12 6.13 8.05 -2.91 -0.02 6.10 16 9 N -0.18 -9.63 3.67 -190.01 -0.70 -10.32 16 10 C -0.05 -1.94 11.49 83.38 0.96 -0.98 16 11 C -0.03 -1.30 6.90 37.73 0.26 -1.04 16 12 N -0.62 -18.72 5.47 -303.92 -1.66 -20.38 16 13 C 0.53 15.93 7.58 87.66 0.66 16.59 16 14 O -0.57 -21.73 10.86 -3.12 -0.03 -21.77 16 15 C -0.18 -3.52 6.05 -11.66 -0.07 -3.59 16 16 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 17 C -0.13 -2.10 9.95 30.52 0.30 -1.80 16 18 C -0.10 -1.89 2.45 -51.98 -0.13 -2.02 16 19 C -0.08 -1.98 4.77 31.57 0.15 -1.83 16 20 C -0.13 -2.25 6.91 31.93 0.22 -2.03 16 21 C -0.12 -1.74 6.84 31.72 0.22 -1.53 16 22 C -0.08 -1.11 6.55 31.23 0.20 -0.91 16 23 C -0.01 -0.44 10.85 85.42 0.93 0.48 16 24 N -0.39 -21.07 7.15 -56.46 -0.40 -21.48 16 25 H 0.28 15.15 8.72 -92.71 -0.81 14.34 16 26 H 0.19 6.47 8.06 -2.91 -0.02 6.45 16 27 H 0.42 8.99 8.83 -92.71 -0.82 8.17 16 28 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.62 6.97 -2.39 -0.02 1.60 16 31 H 0.04 1.27 8.01 -2.39 -0.02 1.25 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.19 8.86 5.92 -2.91 -0.02 8.85 16 Total: -1.00 -69.85 311.80 4.51 -65.34 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.18 Total: 13.46 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 5.07 Total: -18.38 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -2.47 Total: -100.70 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.03 Total: -21.77 kcal Atomic # 14 Polarization: 60.28 SS G_CDS: 1.77 Total: 62.05 kcal Total: -69.85 4.51 -65.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252474506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.367 kcal (2) G-P(sol) polarization free energy of solvation -69.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds