Wall clock time and date at job start Mon Mar 30 2020 02:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86794 * 120.00072 * 2 1 4 4 H 1.48506 * 109.47269 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47435 * 299.99637 * 3 2 1 6 6 H 1.48503 * 109.47346 * 59.99640 * 3 2 1 7 7 C 1.40028 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99770 * 180.02562 * 7 2 1 9 9 C 1.41334 * 120.00227 * 359.73095 * 7 2 1 10 10 C 1.40621 * 119.78965 * 180.27418 * 9 7 2 11 11 C 1.38304 * 119.12692 * 179.97438 * 10 9 7 12 12 C 1.38700 * 118.66907 * 359.97438 * 11 10 9 13 13 C 1.39628 * 119.49944 * 359.97438 * 12 11 10 14 14 N 1.39271 * 119.57345 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99698 * 174.72482 * 14 13 12 16 16 O 1.21272 * 119.99969 * 5.15553 * 15 14 13 17 17 C 1.50700 * 120.00024 * 185.15826 * 15 14 13 18 18 H 1.09000 * 109.50070 * 300.00075 * 17 15 14 19 19 C 1.53120 * 109.50270 * 179.97438 * 17 15 14 20 20 C 1.53126 * 109.15576 * 182.44028 * 19 17 15 21 21 C 1.53046 * 109.30999 * 57.59724 * 20 19 17 22 22 N 1.46847 * 109.52030 * 300.84065 * 21 20 19 23 23 C 1.46847 * 111.19979 * 61.74092 * 22 21 20 24 24 N 1.31934 * 120.84983 * 359.72531 * 13 12 11 25 25 H 0.96998 * 119.99918 * 0.02562 * 1 2 3 26 26 H 1.07991 * 120.43359 * 359.97438 * 10 9 7 27 27 H 1.07996 * 120.66462 * 179.97438 * 11 10 9 28 28 H 1.08003 * 120.25089 * 179.97438 * 12 11 10 29 29 H 0.96993 * 120.00035 * 354.72413 * 14 13 12 30 30 H 1.08999 * 109.52218 * 302.30589 * 19 17 15 31 31 H 1.08993 * 109.52140 * 62.50173 * 19 17 15 32 32 H 1.08997 * 109.47663 * 297.65681 * 20 19 17 33 33 H 1.08996 * 109.53724 * 177.57580 * 20 19 17 34 34 H 1.08993 * 109.46269 * 180.82657 * 21 20 19 35 35 H 1.08997 * 109.45956 * 60.85168 * 21 20 19 36 36 H 1.00897 * 110.99908 * 185.83692 * 22 21 20 37 37 H 1.08996 * 109.46350 * 178.23882 * 23 22 21 38 38 H 1.09001 * 109.45088 * 58.26915 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3009 -2.4367 0.0068 10 6 2.0085 -3.6519 0.0132 11 6 1.3032 -4.8415 0.0199 12 6 -0.0830 -4.7933 0.0206 13 6 -0.7279 -3.5549 0.0151 14 7 -2.1197 -3.5047 0.0153 15 6 -2.7511 -2.3184 0.1174 16 8 -2.1108 -1.2885 0.1150 17 6 -4.2528 -2.2718 0.2347 18 1 -4.7010 -2.7334 -0.6451 19 6 -4.7126 -0.8148 0.3366 20 6 -6.2328 -0.7791 0.5166 21 6 -6.6137 -1.5803 1.7637 22 7 -6.1527 -2.9667 1.6160 23 6 -4.6910 -3.0297 1.4899 24 7 -0.0357 -2.4317 0.0148 25 1 -0.4850 0.8400 -0.0004 26 1 3.0884 -3.6560 0.0129 27 1 1.8214 -5.7890 0.0244 28 1 -0.6592 -5.7068 0.0253 29 1 -2.6345 -4.3234 -0.0581 30 1 -4.2336 -0.3407 1.1933 31 1 -4.4406 -0.2825 -0.5748 32 1 -6.7128 -1.2176 -0.3582 33 1 -6.5619 0.2535 0.6330 34 1 -7.6967 -1.5688 1.8860 35 1 -6.1445 -1.1330 2.6400 36 1 -6.4745 -3.5384 2.3826 37 1 -4.3777 -4.0708 1.4134 38 1 -4.2311 -2.5755 2.3676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262044903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:35 Heat of formation + Delta-G solvation = 14.968665 kcal Electronic energy + Delta-G solvation = -21475.121762 eV Core-core repulsion = 18317.756740 eV Total energy + Delta-G solvation = -3157.365022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.72103 -38.22231 -36.94797 -34.11241 -33.00490 -31.96756 -31.10352 -30.25817 -28.82485 -25.58462 -24.08302 -23.47517 -21.88455 -21.16973 -19.91142 -18.99320 -17.80084 -16.80910 -16.08240 -15.56444 -14.86968 -14.67281 -14.43293 -14.38837 -13.91140 -13.62508 -13.33594 -13.20428 -12.93186 -12.79585 -12.37762 -11.95548 -11.88822 -11.26756 -11.11201 -10.93368 -10.73015 -10.62869 -10.55357 -10.46401 -10.31930 -9.90170 -9.64734 -9.00181 -8.86642 -8.56996 -7.94878 -7.18089 -6.93671 -6.12486 -4.38584 2.78932 3.07940 3.18063 3.21535 3.27415 3.71030 3.88397 4.07214 4.21546 4.83691 4.90912 4.93612 5.04305 5.23504 5.38772 5.45800 5.58040 5.71731 5.82454 5.90997 5.92638 6.06162 6.07741 6.14804 6.36991 6.51119 6.53858 6.71347 6.84810 6.86897 6.90421 7.24951 7.26062 7.57534 7.65352 7.83003 8.09744 8.22500 8.49961 8.76345 9.06819 9.31758 10.26782 10.49552 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.006128 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.748856 B = 4567.894081 C = 5986.883416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.655 5.655 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.426 4.426 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.305 4.305 11 C -0.037 4.037 12 C -0.358 4.358 13 C 0.372 3.628 14 N -0.667 5.667 15 C 0.473 3.527 16 O -0.407 6.407 17 C -0.102 4.102 18 H 0.094 0.906 19 C -0.099 4.099 20 C -0.117 4.117 21 C 0.056 3.944 22 N -0.689 5.689 23 C 0.069 3.931 24 N -0.474 5.474 25 H 0.271 0.729 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.398 0.602 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.030 0.970 36 H 0.342 0.658 37 H 0.077 0.923 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.993 -2.836 2.328 12.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.274 5.274 2 C -0.171 4.171 3 Si 0.719 3.281 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.329 4.329 11 C -0.061 4.061 12 C -0.383 4.383 13 C 0.133 3.867 14 N -0.314 5.314 15 C 0.254 3.746 16 O -0.269 6.269 17 C -0.124 4.124 18 H 0.112 0.888 19 C -0.138 4.138 20 C -0.155 4.155 21 C -0.074 4.074 22 N -0.320 5.320 23 C -0.061 4.061 24 N -0.193 5.193 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.231 0.769 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.159 0.841 37 H 0.095 0.905 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.286 -1.029 1.679 12.443 hybrid contribution 0.812 -0.553 0.882 1.320 sum -11.474 -1.581 2.561 11.862 Atomic orbital electron populations 1.70337 1.05730 1.27233 1.24081 1.26179 0.95129 1.00569 0.95250 0.86474 0.80938 0.82289 0.78352 1.18599 1.20059 1.20106 1.19613 0.94073 0.89373 1.42583 0.89951 1.18411 0.87234 0.91962 0.87861 1.21623 0.98529 0.93557 1.19155 1.20560 0.93211 0.96499 0.95826 1.20507 0.94801 0.95003 1.28032 1.18657 0.83474 0.90888 0.93696 1.43488 1.04991 1.09265 1.73653 1.20691 0.89003 0.84916 0.79983 1.91138 1.65217 1.30886 1.39708 1.21385 0.93406 0.98135 0.99501 0.88792 1.21354 0.94309 0.94607 1.03481 1.21613 0.96469 0.99325 0.98089 1.21950 0.99587 0.88618 0.97216 1.60284 1.11319 1.10698 1.49726 1.21831 0.87470 1.00208 0.96595 1.68718 1.06967 1.23256 1.20332 0.91709 0.88616 0.88678 0.89131 0.76866 0.91364 0.90960 0.91305 0.91520 0.91016 0.95169 0.84051 0.90475 0.94560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -18.25 8.99 55.55 0.50 -17.75 16 2 C 0.06 1.53 5.50 -17.35 -0.10 1.44 16 3 Si 0.89 19.42 29.56 -169.99 -5.02 14.39 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.43 -11.84 9.14 -37.73 -0.34 -12.18 16 8 H 0.08 2.15 7.85 -52.48 -0.41 1.74 16 9 C 0.27 7.69 6.55 -84.99 -0.56 7.13 16 10 C -0.31 -7.79 9.83 -38.66 -0.38 -8.17 16 11 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 12 C -0.36 -8.12 9.95 -38.89 -0.39 -8.51 16 13 C 0.37 9.15 7.43 -154.97 -1.15 8.00 16 14 N -0.67 -13.21 5.25 -11.40 -0.06 -13.27 16 15 C 0.47 9.52 7.11 -10.99 -0.08 9.44 16 16 O -0.41 -10.16 11.75 5.56 0.07 -10.10 16 17 C -0.10 -1.52 2.69 -91.69 -0.25 -1.76 16 18 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 19 C -0.10 -1.45 4.59 -26.60 -0.12 -1.57 16 20 C -0.12 -1.32 6.09 -26.64 -0.16 -1.49 16 21 C 0.06 0.58 6.55 -3.83 -0.03 0.55 16 22 N -0.69 -7.43 6.85 -113.82 -0.78 -8.21 16 23 C 0.07 0.88 5.73 -3.83 -0.02 0.85 16 24 N -0.47 -13.42 5.74 -10.25 -0.06 -13.48 16 25 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 26 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 27 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 28 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 29 H 0.40 6.17 8.31 -40.82 -0.34 5.83 16 30 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.34 3.00 8.90 -39.29 -0.35 2.65 16 37 H 0.08 0.90 7.73 -51.93 -0.40 0.50 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 311.04 15.07 4.69 4.69 Total: -1.00 -32.37 311.04 -9.92 -42.29 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.28 Total: 8.95 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -3.97 Total: -7.51 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.40 Total: -52.71 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.37 -9.92 -42.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262044903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.260 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds