Wall clock time and date at job start Mon Mar 30 2020 02:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86794 * 120.00072 * 2 1 4 4 H 1.48506 * 109.47269 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47435 * 299.99637 * 3 2 1 6 6 H 1.48503 * 109.47346 * 59.99640 * 3 2 1 7 7 C 1.40028 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99770 * 180.02562 * 7 2 1 9 9 C 1.41334 * 120.00227 * 359.73095 * 7 2 1 10 10 C 1.40621 * 119.78965 * 180.27418 * 9 7 2 11 11 C 1.38304 * 119.12692 * 179.97438 * 10 9 7 12 12 C 1.38700 * 118.66907 * 359.97438 * 11 10 9 13 13 C 1.39628 * 119.49944 * 359.97438 * 12 11 10 14 14 N 1.39271 * 119.57345 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99698 * 174.72482 * 14 13 12 16 16 O 1.21272 * 119.99969 * 5.15553 * 15 14 13 17 17 C 1.50700 * 120.00024 * 185.15826 * 15 14 13 18 18 H 1.09000 * 109.50070 * 300.00075 * 17 15 14 19 19 C 1.53120 * 109.50270 * 179.97438 * 17 15 14 20 20 C 1.53126 * 109.15576 * 182.44028 * 19 17 15 21 21 C 1.53046 * 109.30999 * 57.59724 * 20 19 17 22 22 N 1.46847 * 109.52030 * 300.84065 * 21 20 19 23 23 C 1.46847 * 111.19979 * 61.74092 * 22 21 20 24 24 N 1.31934 * 120.84983 * 359.72531 * 13 12 11 25 25 H 0.96998 * 119.99918 * 0.02562 * 1 2 3 26 26 H 1.07991 * 120.43359 * 359.97438 * 10 9 7 27 27 H 1.07996 * 120.66462 * 179.97438 * 11 10 9 28 28 H 1.08003 * 120.25089 * 179.97438 * 12 11 10 29 29 H 0.96993 * 120.00035 * 354.72413 * 14 13 12 30 30 H 1.08999 * 109.52218 * 302.30589 * 19 17 15 31 31 H 1.08993 * 109.52140 * 62.50173 * 19 17 15 32 32 H 1.08997 * 109.47663 * 297.65681 * 20 19 17 33 33 H 1.08996 * 109.53724 * 177.57580 * 20 19 17 34 34 H 1.08993 * 109.46269 * 180.82657 * 21 20 19 35 35 H 1.08997 * 109.45956 * 60.85168 * 21 20 19 36 36 H 1.00897 * 110.99908 * 185.83692 * 22 21 20 37 37 H 1.08996 * 109.46350 * 178.23882 * 23 22 21 38 38 H 1.09001 * 109.45088 * 58.26915 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3009 -2.4367 0.0068 10 6 2.0085 -3.6519 0.0132 11 6 1.3032 -4.8415 0.0199 12 6 -0.0830 -4.7933 0.0206 13 6 -0.7279 -3.5549 0.0151 14 7 -2.1197 -3.5047 0.0153 15 6 -2.7511 -2.3184 0.1174 16 8 -2.1108 -1.2885 0.1150 17 6 -4.2528 -2.2718 0.2347 18 1 -4.7010 -2.7334 -0.6451 19 6 -4.7126 -0.8148 0.3366 20 6 -6.2328 -0.7791 0.5166 21 6 -6.6137 -1.5803 1.7637 22 7 -6.1527 -2.9667 1.6160 23 6 -4.6910 -3.0297 1.4899 24 7 -0.0357 -2.4317 0.0148 25 1 -0.4850 0.8400 -0.0004 26 1 3.0884 -3.6560 0.0129 27 1 1.8214 -5.7890 0.0244 28 1 -0.6592 -5.7068 0.0253 29 1 -2.6345 -4.3234 -0.0581 30 1 -4.2336 -0.3407 1.1933 31 1 -4.4406 -0.2825 -0.5748 32 1 -6.7128 -1.2176 -0.3582 33 1 -6.5619 0.2535 0.6330 34 1 -7.6967 -1.5688 1.8860 35 1 -6.1445 -1.1330 2.6400 36 1 -6.4745 -3.5384 2.3826 37 1 -4.3777 -4.0708 1.4134 38 1 -4.2311 -2.5755 2.3676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262044903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:35 Heat of formation + Delta-G solvation = -7.298233 kcal Electronic energy + Delta-G solvation = -21476.087327 eV Core-core repulsion = 18317.756740 eV Total energy + Delta-G solvation = -3158.330587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.25396 -39.79957 -38.40374 -35.94275 -34.86284 -33.06975 -32.35324 -32.10613 -30.61288 -27.50917 -25.38902 -24.52882 -23.57723 -22.96112 -21.25421 -20.41878 -19.57457 -18.21230 -17.84786 -16.84537 -16.47757 -16.26584 -16.15139 -15.54949 -15.46689 -15.02270 -14.84640 -14.65351 -14.43366 -14.05986 -13.76877 -13.70471 -13.33741 -12.92100 -12.73707 -12.55724 -12.34570 -12.32336 -11.80572 -11.75322 -11.62243 -11.51311 -11.36652 -10.86815 -10.56015 -9.90090 -9.47280 -9.07775 -8.81342 -8.05859 -6.42811 0.91137 1.24663 1.38081 1.49850 1.52808 2.12109 2.25022 2.34586 2.98311 3.25325 3.73798 3.81544 3.92883 4.06118 4.16455 4.29641 4.35445 4.43531 4.58485 4.70154 4.74597 4.76879 4.86897 4.92284 4.95728 5.00236 5.07158 5.11525 5.23094 5.28834 5.42077 5.68285 5.86363 5.92587 5.95769 6.15283 6.37527 6.49277 6.74834 6.84940 7.07987 7.71199 8.35001 8.55962 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.006128 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.748856 B = 4567.894081 C = 5986.883416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.691 5.691 2 C 0.011 3.989 3 Si 0.974 3.026 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.467 4.467 8 H 0.085 0.915 9 C 0.236 3.764 10 C -0.330 4.330 11 C -0.035 4.035 12 C -0.346 4.346 13 C 0.348 3.652 14 N -0.654 5.654 15 C 0.465 3.535 16 O -0.459 6.459 17 C -0.087 4.087 18 H 0.114 0.886 19 C -0.098 4.098 20 C -0.110 4.110 21 C 0.054 3.946 22 N -0.682 5.682 23 C 0.076 3.924 24 N -0.509 5.509 25 H 0.269 0.731 26 H 0.104 0.896 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.419 0.581 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.023 0.977 36 H 0.358 0.642 37 H 0.094 0.906 38 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.624 -4.334 2.498 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.310 5.310 2 C -0.214 4.214 3 Si 0.795 3.205 4 H -0.177 1.177 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.498 4.498 8 H 0.103 0.897 9 C 0.110 3.890 10 C -0.353 4.353 11 C -0.059 4.059 12 C -0.371 4.371 13 C 0.109 3.891 14 N -0.303 5.303 15 C 0.249 3.751 16 O -0.326 6.326 17 C -0.109 4.109 18 H 0.132 0.868 19 C -0.137 4.137 20 C -0.147 4.147 21 C -0.075 4.075 22 N -0.315 5.315 23 C -0.054 4.054 24 N -0.228 5.228 25 H 0.080 0.920 26 H 0.122 0.878 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.257 0.743 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.041 0.959 36 H 0.177 0.823 37 H 0.112 0.888 38 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -13.961 -2.594 1.856 14.321 hybrid contribution 1.251 -0.271 0.827 1.524 sum -12.710 -2.865 2.683 13.302 Atomic orbital electron populations 1.70535 1.07258 1.27831 1.25361 1.27035 0.96022 1.03991 0.94389 0.85283 0.79646 0.77170 0.78377 1.17691 1.19524 1.19655 1.19924 0.94420 0.90489 1.44935 0.89689 1.18901 0.88033 0.93405 0.88626 1.21807 0.99179 0.93874 1.20416 1.21040 0.93604 0.97302 0.93942 1.20996 0.95193 0.95796 1.25116 1.19200 0.85370 0.91057 0.93468 1.43470 1.03471 1.10506 1.72896 1.21665 0.91079 0.84136 0.78257 1.91136 1.66914 1.32660 1.41860 1.21298 0.89211 0.98875 1.01530 0.86837 1.21324 0.96888 0.94070 1.01376 1.21585 0.93385 1.00668 0.99089 1.22021 1.01138 0.88113 0.96222 1.60264 1.09452 1.11197 1.50581 1.21708 0.88905 1.00407 0.94350 1.68678 1.07302 1.25478 1.21385 0.92013 0.87833 0.84528 0.84978 0.74305 0.94051 0.92863 0.90377 0.90207 0.88264 0.95911 0.82275 0.88821 0.96634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -40.51 8.99 21.84 0.20 -40.31 16 2 C 0.01 0.60 5.50 85.29 0.47 1.07 16 3 Si 0.97 41.48 29.56 68.60 2.03 43.51 16 4 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.47 -27.11 9.14 23.47 0.21 -26.90 16 8 H 0.08 4.64 7.85 -2.91 -0.02 4.61 16 9 C 0.24 13.90 6.55 40.21 0.26 14.17 16 10 C -0.33 -16.97 9.83 22.87 0.22 -16.74 16 11 C -0.03 -1.53 10.15 22.40 0.23 -1.30 16 12 C -0.35 -14.93 9.95 22.72 0.23 -14.71 16 13 C 0.35 17.10 7.43 133.23 0.99 18.09 16 14 N -0.65 -25.51 5.25 -308.38 -1.62 -27.13 16 15 C 0.47 19.02 7.11 87.66 0.62 19.65 16 16 O -0.46 -24.13 11.75 -3.00 -0.04 -24.17 16 17 C -0.09 -2.53 2.69 -11.49 -0.03 -2.56 16 18 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 19 C -0.10 -2.90 4.59 30.68 0.14 -2.76 16 20 C -0.11 -2.28 6.09 30.65 0.19 -2.09 16 21 C 0.05 0.99 6.55 86.33 0.57 1.55 16 22 N -0.68 -12.66 6.85 -514.01 -3.52 -16.18 16 23 C 0.08 1.81 5.73 86.33 0.49 2.31 16 24 N -0.51 -29.77 5.74 -186.36 -1.07 -30.84 16 25 H 0.27 14.87 8.29 -92.71 -0.77 14.10 16 26 H 0.10 4.97 8.06 -2.92 -0.02 4.95 16 27 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 28 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 29 H 0.42 12.05 8.31 -92.71 -0.77 11.28 16 30 H 0.04 1.42 8.04 -2.39 -0.02 1.40 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.36 5.05 8.90 -89.70 -0.80 4.26 16 37 H 0.09 1.91 7.73 -2.39 -0.02 1.89 16 38 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -74.50 311.04 0.10 -74.40 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: -0.48 Total: 30.95 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 4.59 Total: -10.23 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -6.01 Total: -114.47 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.04 Total: -24.17 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -74.50 0.10 -74.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262044903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.102 kcal (2) G-P(sol) polarization free energy of solvation -74.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds