Wall clock time and date at job start Mon Mar 30 2020 01:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48499 * 109.46980 * 270.00048 * 3 2 1 5 5 H 1.48496 * 109.47371 * 30.00304 * 3 2 1 6 6 H 1.48499 * 109.47157 * 150.00444 * 3 2 1 7 7 C 1.37875 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99888 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46791 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99859 * 179.97438 * 10 9 7 12 12 O 1.21590 * 119.99516 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00353 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00117 * 180.02562 * 13 11 10 15 15 H 1.08997 * 110.72897 * 36.94921 * 14 13 11 16 16 C 1.54350 * 110.82017 * 273.54184 * 14 13 11 17 17 C 1.51365 * 105.17056 * 215.22918 * 16 14 13 18 18 C 1.38498 * 130.39099 * 197.17004 * 17 16 14 19 19 C 1.38107 * 120.21616 * 179.70861 * 18 17 16 20 20 C 1.38255 * 119.93180 * 0.60139 * 19 18 17 21 21 C 1.38105 * 119.93554 * 359.41457 * 20 19 18 22 22 C 1.38224 * 109.75816 * 17.19532 * 17 16 14 23 23 C 1.51360 * 109.75908 * 359.97438 * 22 17 16 24 24 H 1.08993 * 110.30524 * 101.74011 * 23 22 17 25 25 N 1.46901 * 110.30479 * 223.89246 * 23 22 17 26 26 H 0.97008 * 119.99861 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47010 * 59.99600 * 9 7 2 28 28 H 1.08996 * 109.46497 * 299.99888 * 9 7 2 29 29 H 0.96995 * 120.00187 * 0.02562 * 10 9 7 30 30 H 0.97001 * 120.00151 * 359.97438 * 13 11 10 31 31 H 1.08993 * 110.30092 * 96.30611 * 16 14 13 32 32 H 1.08997 * 110.38581 * 334.19616 * 16 14 13 33 33 H 1.08004 * 119.88931 * 0.02562 * 18 17 16 34 34 H 1.07999 * 120.03489 * 180.31326 * 19 18 17 35 35 H 1.08002 * 120.03455 * 179.70132 * 20 19 18 36 36 H 1.08002 * 119.88993 * 180.30211 * 21 20 19 37 37 H 1.00894 * 111.00023 * 298.54856 * 25 23 22 38 38 H 1.00907 * 110.99800 * 62.49945 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 1.7538 -4.8834 -0.0033 12 8 0.5583 -5.1055 -0.0026 13 7 2.6295 -5.9077 -0.0037 14 6 2.1412 -7.2890 -0.0049 15 1 1.2447 -7.3807 -0.6182 16 6 1.8736 -7.7776 1.4345 17 6 2.2510 -9.2434 1.4319 18 6 1.9341 -10.2534 2.3250 19 6 2.3930 -11.5385 2.1125 20 6 3.1818 -11.8160 1.0114 21 6 3.4992 -10.8102 0.1199 22 6 3.0348 -9.5221 0.3280 23 6 3.2372 -8.2628 -0.4870 24 1 4.2251 -7.8437 -0.2966 25 7 3.0713 -8.5496 -1.9182 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6240 -2.5574 0.8880 29 1 3.1566 -3.4354 -0.0022 30 1 3.5832 -5.7306 -0.0039 31 1 0.8194 -7.6589 1.6844 32 1 2.4937 -7.2287 2.1432 33 1 1.3217 -10.0363 3.1878 34 1 2.1399 -12.3249 2.8081 35 1 3.5457 -12.8194 0.8462 36 1 4.1114 -11.0289 -0.7426 37 1 3.7553 -9.2206 -2.2341 38 1 2.1344 -8.8673 -2.1170 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262581692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:33 Heat of formation + Delta-G solvation = -7.677814 kcal Electronic energy + Delta-G solvation = -20348.018509 eV Core-core repulsion = 17189.671462 eV Total energy + Delta-G solvation = -3158.347047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66741 -38.97545 -36.58984 -34.11540 -33.50550 -32.71190 -32.05962 -30.57302 -28.35083 -26.79074 -25.76682 -23.09680 -22.09363 -21.23040 -20.75175 -20.06255 -18.07385 -16.95900 -16.41295 -16.03643 -15.61662 -15.29781 -15.15597 -14.71492 -14.44876 -14.06819 -13.86338 -13.54599 -13.13779 -13.00393 -12.89853 -12.60689 -12.11259 -11.91976 -11.72468 -11.53991 -11.11517 -11.07867 -10.92167 -10.85446 -10.26878 -9.39208 -9.33261 -9.19610 -8.98849 -8.76078 -8.69595 -8.65154 -7.72169 -6.12037 -4.18320 1.07951 1.14137 3.27304 3.28998 3.34108 3.38179 3.49682 3.91423 4.19642 4.26235 4.35643 4.59386 4.74326 4.76164 4.86737 5.05021 5.13148 5.23340 5.24189 5.27444 5.43835 5.52772 5.63997 5.84109 5.99463 6.06714 6.16494 6.24871 6.38100 6.74176 6.87117 6.90614 7.15661 7.20157 7.56062 7.59357 7.61684 7.94843 8.08350 8.80577 8.98839 9.37594 9.52235 10.98250 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042845 B = 0.003080 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.368688 B = 9087.565718 C = 9331.549036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.695 3.305 12 O -0.600 6.600 13 N -0.743 5.743 14 C 0.182 3.818 15 H 0.100 0.900 16 C -0.101 4.101 17 C -0.078 4.078 18 C -0.109 4.109 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.102 4.102 22 C -0.139 4.139 23 C 0.127 3.873 24 H 0.100 0.900 25 N -0.831 5.831 26 H 0.265 0.735 27 H 0.025 0.975 28 H 0.024 0.976 29 H 0.386 0.614 30 H 0.392 0.608 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.341 0.659 38 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.971 -22.723 1.792 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.381 5.381 11 C 0.395 3.605 12 O -0.479 6.479 13 N -0.399 5.399 14 C 0.075 3.925 15 H 0.118 0.882 16 C -0.140 4.140 17 C -0.079 4.079 18 C -0.127 4.127 19 C -0.134 4.134 20 C -0.144 4.144 21 C -0.120 4.120 22 C -0.142 4.142 23 C 0.015 3.985 24 H 0.117 0.883 25 N -0.360 5.360 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.218 0.782 30 H 0.226 0.774 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.820 -21.924 1.641 23.335 hybrid contribution 1.151 -0.026 0.419 1.225 sum 8.971 -21.950 2.060 23.802 Atomic orbital electron populations 1.69985 1.06081 1.27214 1.49061 1.24944 0.94911 0.99384 0.94820 0.86415 0.79589 0.82698 0.78186 1.20490 1.21048 1.19796 1.21236 0.93269 0.90466 1.52960 0.91959 1.18971 0.87777 0.81056 0.97584 1.45701 1.10782 1.04382 1.77188 1.16115 0.85174 0.81024 0.78186 1.90869 1.14209 1.84196 1.58666 1.45004 1.08770 1.04203 1.81938 1.21162 0.96536 0.80158 0.94684 0.88161 1.21623 1.03341 0.90493 0.98548 1.20618 0.96852 0.95649 0.94746 1.20716 1.00466 0.92267 0.99237 1.21067 0.98047 0.96395 0.97849 1.21009 0.99292 0.98940 0.95144 1.20529 1.00102 0.91781 0.99583 1.21433 0.99174 0.95520 0.98028 1.21203 0.99999 0.90838 0.86488 0.88271 1.58878 1.09533 1.52912 1.14642 0.92497 0.95749 0.95763 0.78166 0.77400 0.89618 0.89375 0.86034 0.85901 0.85984 0.86525 0.84618 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.24 5.43 -5.19 -0.03 7.21 16 10 N -0.73 -15.77 5.55 -66.41 -0.37 -16.14 16 11 C 0.70 14.44 8.56 -86.92 -0.74 13.69 16 12 O -0.60 -15.02 16.08 5.29 0.08 -14.93 16 13 N -0.74 -11.18 5.18 -57.30 -0.30 -11.48 16 14 C 0.18 2.44 3.02 -66.52 -0.20 2.24 16 15 H 0.10 1.57 7.49 -51.93 -0.39 1.19 16 16 C -0.10 -1.28 6.49 -26.85 -0.17 -1.45 16 17 C -0.08 -0.87 6.14 -104.20 -0.64 -1.51 16 18 C -0.11 -1.09 10.04 -39.53 -0.40 -1.49 16 19 C -0.12 -1.00 10.05 -39.62 -0.40 -1.40 16 20 C -0.13 -1.04 10.05 -39.62 -0.40 -1.44 16 21 C -0.10 -0.89 9.88 -39.53 -0.39 -1.28 16 22 C -0.14 -1.42 5.78 -104.21 -0.60 -2.02 16 23 C 0.13 1.32 3.72 -67.84 -0.25 1.07 16 24 H 0.10 0.98 7.79 -51.93 -0.40 0.57 16 25 N -0.83 -7.99 9.30 -4.78 -0.04 -8.03 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.39 7.16 8.33 -40.82 -0.34 6.82 16 30 H 0.39 4.80 8.40 -40.82 -0.34 4.46 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.12 0.78 7.95 -52.49 -0.42 0.37 16 37 H 0.34 2.54 8.82 -39.29 -0.35 2.19 16 38 H 0.35 3.29 8.83 -39.29 -0.35 2.94 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -33.29 324.32 -9.74 -43.03 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.08 Total: 12.19 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -4.64 Total: 0.11 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: 0.03 Total: -61.32 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.08 Total: -14.93 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.29 -9.74 -43.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262581692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.356 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds