Wall clock time and date at job start Mon Mar 30 2020 01:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48499 * 109.46980 * 270.00048 * 3 2 1 5 5 H 1.48496 * 109.47371 * 30.00304 * 3 2 1 6 6 H 1.48499 * 109.47157 * 150.00444 * 3 2 1 7 7 C 1.37875 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99888 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46791 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99859 * 179.97438 * 10 9 7 12 12 O 1.21590 * 119.99516 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00353 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00117 * 180.02562 * 13 11 10 15 15 H 1.08997 * 110.72897 * 36.94921 * 14 13 11 16 16 C 1.54350 * 110.82017 * 273.54184 * 14 13 11 17 17 C 1.51365 * 105.17056 * 215.22918 * 16 14 13 18 18 C 1.38498 * 130.39099 * 197.17004 * 17 16 14 19 19 C 1.38107 * 120.21616 * 179.70861 * 18 17 16 20 20 C 1.38255 * 119.93180 * 0.60139 * 19 18 17 21 21 C 1.38105 * 119.93554 * 359.41457 * 20 19 18 22 22 C 1.38224 * 109.75816 * 17.19532 * 17 16 14 23 23 C 1.51360 * 109.75908 * 359.97438 * 22 17 16 24 24 H 1.08993 * 110.30524 * 101.74011 * 23 22 17 25 25 N 1.46901 * 110.30479 * 223.89246 * 23 22 17 26 26 H 0.97008 * 119.99861 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47010 * 59.99600 * 9 7 2 28 28 H 1.08996 * 109.46497 * 299.99888 * 9 7 2 29 29 H 0.96995 * 120.00187 * 0.02562 * 10 9 7 30 30 H 0.97001 * 120.00151 * 359.97438 * 13 11 10 31 31 H 1.08993 * 110.30092 * 96.30611 * 16 14 13 32 32 H 1.08997 * 110.38581 * 334.19616 * 16 14 13 33 33 H 1.08004 * 119.88931 * 0.02562 * 18 17 16 34 34 H 1.07999 * 120.03489 * 180.31326 * 19 18 17 35 35 H 1.08002 * 120.03455 * 179.70132 * 20 19 18 36 36 H 1.08002 * 119.88993 * 180.30211 * 21 20 19 37 37 H 1.00894 * 111.00023 * 298.54856 * 25 23 22 38 38 H 1.00907 * 110.99800 * 62.49945 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 1.7538 -4.8834 -0.0033 12 8 0.5583 -5.1055 -0.0026 13 7 2.6295 -5.9077 -0.0037 14 6 2.1412 -7.2890 -0.0049 15 1 1.2447 -7.3807 -0.6182 16 6 1.8736 -7.7776 1.4345 17 6 2.2510 -9.2434 1.4319 18 6 1.9341 -10.2534 2.3250 19 6 2.3930 -11.5385 2.1125 20 6 3.1818 -11.8160 1.0114 21 6 3.4992 -10.8102 0.1199 22 6 3.0348 -9.5221 0.3280 23 6 3.2372 -8.2628 -0.4870 24 1 4.2251 -7.8437 -0.2966 25 7 3.0713 -8.5496 -1.9182 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6240 -2.5574 0.8880 29 1 3.1566 -3.4354 -0.0022 30 1 3.5832 -5.7306 -0.0039 31 1 0.8194 -7.6589 1.6844 32 1 2.4937 -7.2287 2.1432 33 1 1.3217 -10.0363 3.1878 34 1 2.1399 -12.3249 2.8081 35 1 3.5457 -12.8194 0.8462 36 1 4.1114 -11.0289 -0.7426 37 1 3.7553 -9.2206 -2.2341 38 1 2.1344 -8.8673 -2.1170 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262581692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:33 Heat of formation + Delta-G solvation = -33.357327 kcal Electronic energy + Delta-G solvation = -20349.132056 eV Core-core repulsion = 17189.671462 eV Total energy + Delta-G solvation = -3159.460594 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.64412 -40.49034 -37.59816 -36.07436 -34.78288 -34.25662 -33.49338 -31.28278 -29.73685 -28.44251 -26.68842 -24.82607 -23.31862 -22.16554 -21.73216 -21.58502 -19.79761 -18.10062 -17.94001 -17.25372 -16.83050 -16.54145 -16.22521 -16.17303 -15.88600 -15.43259 -15.00091 -14.68757 -14.34008 -14.12598 -14.01520 -13.90112 -13.83076 -13.50798 -12.89927 -12.86575 -12.68737 -12.40309 -12.20901 -12.06486 -11.82826 -11.45744 -11.24462 -10.78821 -10.28773 -9.93822 -9.71983 -9.58468 -9.46697 -8.26888 -6.43196 0.35868 0.42618 1.44376 1.47410 1.58225 1.84274 2.24930 2.40718 2.78393 3.08070 3.30075 3.35334 3.50963 3.84467 3.99153 4.01347 4.10420 4.16627 4.25514 4.56710 4.62070 4.70597 4.81194 4.87524 5.05785 5.11343 5.15081 5.29241 5.45277 5.50748 5.57099 5.58843 5.61552 5.70372 5.86936 6.05451 6.10789 6.26944 6.53000 6.68709 7.26021 7.32993 7.74339 8.85569 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042845 B = 0.003080 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.368688 B = 9087.565718 C = 9331.549036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.286 3.714 10 N -0.722 5.722 11 C 0.694 3.306 12 O -0.647 6.647 13 N -0.717 5.717 14 C 0.176 3.824 15 H 0.074 0.926 16 C -0.096 4.096 17 C -0.100 4.100 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.102 4.102 22 C -0.143 4.143 23 C 0.142 3.858 24 H 0.112 0.888 25 N -0.837 5.837 26 H 0.269 0.731 27 H -0.016 1.016 28 H -0.014 1.014 29 H 0.405 0.595 30 H 0.411 0.589 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.356 0.644 38 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.996 -23.990 1.629 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.163 3.837 10 N -0.376 5.376 11 C 0.394 3.606 12 O -0.530 6.530 13 N -0.374 5.374 14 C 0.069 3.931 15 H 0.092 0.908 16 C -0.135 4.135 17 C -0.101 4.101 18 C -0.141 4.141 19 C -0.135 4.135 20 C -0.141 4.141 21 C -0.120 4.120 22 C -0.146 4.146 23 C 0.029 3.971 24 H 0.130 0.870 25 N -0.367 5.367 26 H 0.077 0.923 27 H 0.002 0.998 28 H 0.004 0.996 29 H 0.240 0.760 30 H 0.248 0.752 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.144 0.856 34 H 0.164 0.836 35 H 0.168 0.832 36 H 0.159 0.841 37 H 0.171 0.829 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.934 -23.256 1.475 25.740 hybrid contribution 0.173 0.217 0.477 0.552 sum 11.107 -23.039 1.952 25.651 Atomic orbital electron populations 1.70150 1.08287 1.28542 1.50034 1.26073 0.95787 1.03890 0.93902 0.85134 0.78462 0.76886 0.78579 1.19616 1.20958 1.17897 1.21608 0.94321 0.90470 1.52796 0.89813 1.18398 0.88089 0.83328 0.93902 1.45280 1.10895 1.03760 1.77649 1.16262 0.85087 0.81549 0.77703 1.90838 1.16680 1.84896 1.60551 1.44726 1.08933 1.03694 1.80010 1.21266 0.97048 0.79571 0.95211 0.90809 1.21451 1.01904 0.92338 0.97784 1.20531 0.98537 0.94745 0.96270 1.20915 1.00924 0.92856 0.99389 1.21396 0.97479 0.96169 0.98474 1.21413 0.98257 1.00125 0.94353 1.20828 0.99859 0.90942 1.00415 1.21410 0.99559 0.96111 0.97502 1.20970 0.98897 0.90189 0.87000 0.87037 1.58856 1.10087 1.53748 1.13986 0.92256 0.99766 0.99645 0.76009 0.75227 0.91967 0.89550 0.85637 0.83573 0.83159 0.84113 0.82874 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 2 C 0.00 0.16 5.46 84.65 0.46 0.63 16 3 Si 0.99 42.79 29.54 68.60 2.03 44.82 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.55 -30.67 9.28 25.60 0.24 -30.43 16 8 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.29 16.20 5.43 85.64 0.46 16.67 16 10 N -0.72 -31.94 5.55 -482.29 -2.68 -34.62 16 11 C 0.69 29.79 8.56 179.06 1.53 31.32 16 12 O -0.65 -34.25 16.08 -4.00 -0.06 -34.32 16 13 N -0.72 -21.65 5.18 -453.46 -2.35 -24.00 16 14 C 0.18 4.80 3.02 45.90 0.14 4.94 16 15 H 0.07 2.45 7.49 -2.39 -0.02 2.43 16 16 C -0.10 -2.52 6.49 30.52 0.20 -2.33 16 17 C -0.10 -2.20 6.14 -19.59 -0.12 -2.32 16 18 C -0.12 -2.36 10.04 22.30 0.22 -2.13 16 19 C -0.12 -1.74 10.05 22.24 0.22 -1.51 16 20 C -0.12 -1.62 10.05 22.24 0.22 -1.40 16 21 C -0.10 -1.48 9.88 22.30 0.22 -1.26 16 22 C -0.14 -2.69 5.78 -19.60 -0.11 -2.80 16 23 C 0.14 2.75 3.72 44.83 0.17 2.92 16 24 H 0.11 1.92 7.79 -2.39 -0.02 1.90 16 25 N -0.84 -14.75 9.30 -169.03 -1.57 -16.32 16 26 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 27 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 28 H -0.01 -0.92 8.14 -2.39 -0.02 -0.93 16 29 H 0.40 14.73 8.33 -92.71 -0.77 13.95 16 30 H 0.41 9.51 8.40 -92.71 -0.78 8.73 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 2.23 8.08 -2.39 -0.02 2.22 16 33 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 36 H 0.14 1.32 7.95 -2.91 -0.02 1.30 16 37 H 0.36 4.38 8.82 -89.70 -0.79 3.59 16 38 H 0.35 6.27 8.83 -89.69 -0.79 5.48 16 Total: -1.00 -75.22 324.32 -2.51 -77.73 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: -2.01 Total: 31.16 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 3.86 Total: 12.29 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -6.31 Total: -131.67 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.06 Total: -34.32 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -75.22 -2.51 -77.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262581692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.372 kcal (2) G-P(sol) polarization free energy of solvation -75.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds