Wall clock time and date at job start Mon Mar 30 2020 01:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00117 * 2 1 4 4 H 1.48507 * 109.47249 * 240.00145 * 3 2 1 5 5 H 1.48496 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47022 * 120.00203 * 3 2 1 7 7 C 1.38816 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99830 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99458 * 359.97438 * 7 2 1 10 10 C 1.47586 * 134.48786 * 180.02562 * 9 7 2 11 11 C 1.53951 * 86.11531 * 155.35697 * 10 9 7 12 12 N 1.46504 * 113.73788 * 137.95367 * 11 10 9 13 13 C 1.34776 * 119.99572 * 156.93129 * 12 11 10 14 14 O 1.21281 * 120.00249 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99821 * 180.02562 * 13 12 11 16 16 C 1.52999 * 109.47039 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.46818 * 179.97438 * 16 15 13 18 18 C 1.38227 * 119.61686 * 125.02645 * 17 16 15 19 19 C 1.38627 * 119.15663 * 179.70253 * 18 17 16 20 20 C 1.38669 * 118.42388 * 0.51169 * 19 18 17 21 21 C 1.38186 * 119.16143 * 359.50231 * 20 19 18 22 22 N 1.31856 * 119.61480 * 304.99563 * 17 16 15 23 23 C 1.47812 * 134.46143 * 359.86863 * 9 7 2 24 24 H 0.97005 * 119.99397 * 0.02562 * 1 2 3 25 25 H 1.09001 * 113.77158 * 41.05952 * 10 9 7 26 26 H 1.09002 * 113.77101 * 269.65849 * 10 9 7 27 27 H 1.09000 * 113.73920 * 269.15057 * 11 10 9 28 28 H 0.96997 * 120.00468 * 336.92030 * 12 11 10 29 29 H 1.08994 * 109.47274 * 59.98786 * 15 13 12 30 30 H 1.09003 * 109.46664 * 299.99330 * 15 13 12 31 31 H 1.08998 * 109.47200 * 59.99888 * 16 15 13 32 32 H 1.08994 * 109.47201 * 299.99667 * 16 15 13 33 33 H 1.07998 * 120.41947 * 359.94797 * 18 17 16 34 34 H 1.08008 * 120.78691 * 180.26734 * 19 18 17 35 35 H 1.08002 * 120.42244 * 179.78749 * 20 19 18 36 36 H 1.07996 * 119.61757 * 180.25243 * 21 20 19 37 37 H 1.08996 * 113.77093 * 90.38047 * 23 9 7 38 38 H 1.09003 * 113.83492 * 318.91319 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 1.7201 -3.8101 -0.0005 11 6 0.3470 -4.0829 0.6399 12 7 -0.3334 -5.2613 0.0970 13 6 -1.2734 -5.8929 0.8277 14 8 -1.5557 -5.4860 1.9348 15 6 -1.9728 -7.1055 0.2696 16 6 -2.9842 -7.6268 1.2924 17 6 -3.6841 -8.8390 0.7339 18 6 -3.6787 -10.0213 1.4500 19 6 -4.3308 -11.1287 0.9303 20 6 -4.9576 -11.0081 -0.3008 21 6 -4.9206 -9.7937 -0.9591 22 7 -4.2951 -8.7592 -0.4318 23 6 -0.1058 -2.7570 0.0024 24 1 -0.4849 0.8401 -0.0004 25 1 2.5624 -4.0324 0.6547 26 1 1.8318 -4.2351 -0.9981 27 1 0.3595 -4.0638 1.7297 28 1 -0.1075 -5.5869 -0.7883 29 1 -1.2387 -7.8824 0.0564 30 1 -2.4921 -6.8343 -0.6497 31 1 -3.7184 -6.8499 1.5058 32 1 -2.4647 -7.8980 2.2114 33 1 -3.1762 -10.0804 2.4042 34 1 -4.3468 -12.0644 1.4695 35 1 -5.4721 -11.8513 -0.7374 36 1 -5.4098 -9.6904 -1.9163 37 1 -0.5319 -2.8717 -0.9943 38 1 -0.7184 -2.1401 0.6599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268432655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:23 Heat of formation + Delta-G solvation = 47.638936 kcal Electronic energy + Delta-G solvation = -19885.142277 eV Core-core repulsion = 16729.193944 eV Total energy + Delta-G solvation = -3155.948333 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48092 -39.44322 -37.53421 -34.19265 -33.44503 -32.59220 -31.80103 -30.25691 -27.48836 -25.41644 -24.79684 -23.75798 -22.97164 -21.66522 -19.99958 -19.45745 -17.32235 -16.77045 -16.57146 -16.46779 -15.66956 -15.49943 -15.32625 -14.83086 -14.29208 -13.84543 -13.72739 -13.55683 -13.15709 -12.89970 -12.57524 -12.15398 -11.84729 -11.72284 -11.42811 -11.40698 -11.16488 -10.86154 -10.74925 -10.41965 -10.14114 -10.03904 -9.65770 -9.53897 -9.44836 -9.16097 -8.78958 -8.38298 -6.90251 -5.75380 -3.09516 0.84500 1.01577 2.99426 3.40504 3.43621 3.46610 3.48140 3.63726 4.08017 4.44394 4.51354 4.57645 4.79851 4.84452 4.95747 5.10109 5.14569 5.23274 5.38310 5.48456 5.50804 5.60998 5.62202 5.76180 5.90460 6.02987 6.04592 6.05901 6.24150 6.44068 6.45742 6.58985 6.82119 7.26080 7.39851 7.58306 7.76960 7.94049 7.98658 8.62016 9.04413 9.70784 10.57803 11.41250 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.052162 B = 0.002682 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.658438 B =10436.077988 C =10547.770236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.226 4.226 8 H 0.081 0.919 9 N -0.608 5.608 10 C 0.112 3.888 11 C 0.091 3.909 12 N -0.717 5.717 13 C 0.510 3.490 14 O -0.547 6.547 15 C -0.131 4.131 16 C -0.054 4.054 17 C 0.135 3.865 18 C -0.170 4.170 19 C -0.074 4.074 20 C -0.184 4.184 21 C 0.102 3.898 22 N -0.481 5.481 23 C 0.154 3.846 24 H 0.255 0.745 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.110 0.890 28 H 0.397 0.603 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.155 0.845 37 H 0.029 0.971 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.018 -23.664 -0.883 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.354 4.354 8 H 0.099 0.901 9 N -0.335 5.335 10 C -0.015 4.015 11 C -0.014 4.014 12 N -0.367 5.367 13 C 0.296 3.704 14 O -0.424 6.424 15 C -0.172 4.172 16 C -0.093 4.093 17 C -0.002 4.002 18 C -0.190 4.190 19 C -0.100 4.100 20 C -0.204 4.204 21 C -0.055 4.055 22 N -0.190 5.190 23 C 0.028 3.972 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.128 0.872 28 H 0.230 0.770 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.172 0.828 37 H 0.046 0.954 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.168 -22.191 -0.523 23.652 hybrid contribution 0.499 -0.159 -0.264 0.586 sum -7.669 -22.350 -0.786 23.643 Atomic orbital electron populations 1.69826 1.05047 1.25597 1.56029 1.24829 0.95703 0.97653 1.02183 0.86166 0.78446 0.82984 0.77930 1.21156 1.21513 1.20985 1.18933 0.90207 0.81664 1.44587 0.90126 1.45722 1.02472 0.99153 1.86103 1.22870 0.94706 0.86869 0.97019 1.23866 0.93296 0.84368 0.99835 1.46157 1.39889 1.30843 1.19815 1.20594 0.79729 0.84496 0.85560 1.90695 1.64198 1.67196 1.20340 1.21561 0.98673 0.96213 1.00732 1.20300 0.97440 0.93881 0.97654 1.21399 0.93781 0.94775 0.90271 1.22044 1.01589 0.93600 1.01767 1.21595 0.94611 0.98713 0.95127 1.22131 1.02065 0.99575 0.96607 1.22789 0.95017 0.88369 0.99321 1.67517 1.08015 1.31775 1.11699 1.22705 0.88059 0.89240 0.97216 0.93473 0.93325 0.94755 0.87247 0.76996 0.89434 0.87967 0.88903 0.89468 0.84647 0.84944 0.84973 0.82765 0.95368 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.93 11.39 55.49 0.63 -27.29 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.46 10.70 -15.06 -0.16 -6.62 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.61 -15.91 3.70 -177.87 -0.66 -16.56 16 10 C 0.11 2.28 8.69 -2.96 -0.03 2.25 16 11 C 0.09 1.81 4.40 -70.14 -0.31 1.51 16 12 N -0.72 -11.16 5.37 -55.34 -0.30 -11.46 16 13 C 0.51 7.96 7.83 -10.98 -0.09 7.87 16 14 O -0.55 -10.72 15.60 5.56 0.09 -10.63 16 15 C -0.13 -1.50 5.56 -27.88 -0.15 -1.66 16 16 C -0.05 -0.61 4.90 -27.88 -0.14 -0.75 16 17 C 0.14 1.43 6.18 -82.58 -0.51 0.92 16 18 C -0.17 -1.46 9.71 -39.44 -0.38 -1.84 16 19 C -0.07 -0.53 10.18 -39.28 -0.40 -0.93 16 20 C -0.18 -1.30 10.11 -39.44 -0.40 -1.69 16 21 C 0.10 0.89 11.18 -17.55 -0.20 0.69 16 22 N -0.48 -5.37 9.88 -9.47 -0.09 -5.47 16 23 C 0.15 3.77 7.32 -2.85 -0.02 3.75 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.03 0.64 8.11 -51.93 -0.42 0.22 16 27 H 0.11 2.36 7.51 -51.93 -0.39 1.97 16 28 H 0.40 4.99 8.71 -40.82 -0.36 4.64 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 1.15 7.95 -51.93 -0.41 0.74 16 31 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.09 0.93 7.83 -51.93 -0.41 0.52 16 33 H 0.14 0.91 7.95 -52.49 -0.42 0.49 16 34 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 35 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 2.13 7.17 -51.93 -0.37 1.76 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -34.77 327.15 -8.58 -43.35 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.28 Total: 2.53 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -2.88 Total: 3.21 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.42 Total: -60.79 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.77 -8.58 -43.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268432655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.988 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds