Wall clock time and date at job start Mon Mar 30 2020 01:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00117 * 2 1 4 4 H 1.48507 * 109.47249 * 240.00145 * 3 2 1 5 5 H 1.48496 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47022 * 120.00203 * 3 2 1 7 7 C 1.38816 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99830 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99458 * 359.97438 * 7 2 1 10 10 C 1.47586 * 134.48786 * 180.02562 * 9 7 2 11 11 C 1.53951 * 86.11531 * 155.35697 * 10 9 7 12 12 N 1.46504 * 113.73788 * 137.95367 * 11 10 9 13 13 C 1.34776 * 119.99572 * 156.93129 * 12 11 10 14 14 O 1.21281 * 120.00249 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99821 * 180.02562 * 13 12 11 16 16 C 1.52999 * 109.47039 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.46818 * 179.97438 * 16 15 13 18 18 C 1.38227 * 119.61686 * 125.02645 * 17 16 15 19 19 C 1.38627 * 119.15663 * 179.70253 * 18 17 16 20 20 C 1.38669 * 118.42388 * 0.51169 * 19 18 17 21 21 C 1.38186 * 119.16143 * 359.50231 * 20 19 18 22 22 N 1.31856 * 119.61480 * 304.99563 * 17 16 15 23 23 C 1.47812 * 134.46143 * 359.86863 * 9 7 2 24 24 H 0.97005 * 119.99397 * 0.02562 * 1 2 3 25 25 H 1.09001 * 113.77158 * 41.05952 * 10 9 7 26 26 H 1.09002 * 113.77101 * 269.65849 * 10 9 7 27 27 H 1.09000 * 113.73920 * 269.15057 * 11 10 9 28 28 H 0.96997 * 120.00468 * 336.92030 * 12 11 10 29 29 H 1.08994 * 109.47274 * 59.98786 * 15 13 12 30 30 H 1.09003 * 109.46664 * 299.99330 * 15 13 12 31 31 H 1.08998 * 109.47200 * 59.99888 * 16 15 13 32 32 H 1.08994 * 109.47201 * 299.99667 * 16 15 13 33 33 H 1.07998 * 120.41947 * 359.94797 * 18 17 16 34 34 H 1.08008 * 120.78691 * 180.26734 * 19 18 17 35 35 H 1.08002 * 120.42244 * 179.78749 * 20 19 18 36 36 H 1.07996 * 119.61757 * 180.25243 * 21 20 19 37 37 H 1.08996 * 113.77093 * 90.38047 * 23 9 7 38 38 H 1.09003 * 113.83492 * 318.91319 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 1.7201 -3.8101 -0.0005 11 6 0.3470 -4.0829 0.6399 12 7 -0.3334 -5.2613 0.0970 13 6 -1.2734 -5.8929 0.8277 14 8 -1.5557 -5.4860 1.9348 15 6 -1.9728 -7.1055 0.2696 16 6 -2.9842 -7.6268 1.2924 17 6 -3.6841 -8.8390 0.7339 18 6 -3.6787 -10.0213 1.4500 19 6 -4.3308 -11.1287 0.9303 20 6 -4.9576 -11.0081 -0.3008 21 6 -4.9206 -9.7937 -0.9591 22 7 -4.2951 -8.7592 -0.4318 23 6 -0.1058 -2.7570 0.0024 24 1 -0.4849 0.8401 -0.0004 25 1 2.5624 -4.0324 0.6547 26 1 1.8318 -4.2351 -0.9981 27 1 0.3595 -4.0638 1.7297 28 1 -0.1075 -5.5869 -0.7883 29 1 -1.2387 -7.8824 0.0564 30 1 -2.4921 -6.8343 -0.6497 31 1 -3.7184 -6.8499 1.5058 32 1 -2.4647 -7.8980 2.2114 33 1 -3.1762 -10.0804 2.4042 34 1 -4.3468 -12.0644 1.4695 35 1 -5.4721 -11.8513 -0.7374 36 1 -5.4098 -9.6904 -1.9163 37 1 -0.5319 -2.8717 -0.9943 38 1 -0.7184 -2.1401 0.6599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268432655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:22 Heat of formation + Delta-G solvation = 23.316668 kcal Electronic energy + Delta-G solvation = -19886.196970 eV Core-core repulsion = 16729.193944 eV Total energy + Delta-G solvation = -3157.003025 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.24386 -40.77681 -39.21559 -35.12851 -35.02961 -33.72715 -33.21115 -31.12029 -29.38817 -26.63568 -26.49189 -24.72680 -24.29734 -22.56737 -21.38111 -21.09996 -18.78973 -18.26237 -17.46556 -17.27062 -17.11076 -16.93117 -16.35554 -16.15998 -15.72359 -15.31321 -14.85887 -14.60595 -14.24614 -14.00972 -13.79057 -13.47437 -13.28174 -13.20524 -12.98094 -12.76631 -12.62422 -12.42694 -12.30234 -12.08713 -11.96383 -11.52731 -10.89671 -10.85495 -10.72580 -10.29412 -9.92320 -9.83564 -8.98482 -7.92465 -5.28288 0.22392 0.43096 1.44766 1.49362 1.55519 1.70337 2.21291 2.50608 2.91617 3.25079 3.35215 3.42816 3.77174 3.85065 3.92341 4.10419 4.21246 4.23544 4.31026 4.35283 4.41936 4.53271 4.69150 4.74432 4.78500 4.89840 4.90803 5.01108 5.14190 5.20113 5.25171 5.33753 5.34533 5.46974 5.72504 5.86731 5.88602 6.66183 6.86963 7.12471 7.35451 7.57321 8.50559 9.24199 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.052162 B = 0.002682 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.658438 B =10436.077988 C =10547.770236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.072 4.072 3 Si 0.985 3.015 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.237 4.237 8 H 0.091 0.909 9 N -0.640 5.640 10 C 0.123 3.877 11 C 0.120 3.880 12 N -0.705 5.705 13 C 0.510 3.490 14 O -0.589 6.589 15 C -0.115 4.115 16 C -0.051 4.051 17 C 0.113 3.887 18 C -0.175 4.175 19 C -0.076 4.076 20 C -0.177 4.177 21 C 0.085 3.915 22 N -0.512 5.512 23 C 0.151 3.849 24 H 0.248 0.752 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.415 0.585 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.150 0.850 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.173 0.827 37 H 0.025 0.975 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.227 -26.343 -1.658 27.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.265 4.265 3 Si 0.812 3.188 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.200 1.200 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.367 5.367 10 C -0.003 4.003 11 C 0.013 3.987 12 N -0.357 5.357 13 C 0.298 3.702 14 O -0.470 6.470 15 C -0.155 4.155 16 C -0.089 4.089 17 C -0.024 4.024 18 C -0.195 4.195 19 C -0.102 4.102 20 C -0.196 4.196 21 C -0.072 4.072 22 N -0.222 5.222 23 C 0.024 3.976 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.252 0.748 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.167 0.833 34 H 0.180 0.820 35 H 0.180 0.820 36 H 0.190 0.810 37 H 0.043 0.957 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.350 -24.934 -1.329 26.029 hybrid contribution 0.195 0.541 -0.032 0.576 sum -7.155 -24.393 -1.361 25.458 Atomic orbital electron populations 1.70049 1.06731 1.25806 1.57919 1.25765 0.96592 1.01361 1.02742 0.85058 0.77039 0.78195 0.78460 1.19872 1.22233 1.20003 1.19413 0.91004 0.82925 1.43131 0.89113 1.46073 1.03346 1.00919 1.86412 1.23014 0.95028 0.83487 0.98738 1.23118 0.93149 0.83936 0.98483 1.45924 1.39657 1.29381 1.20713 1.21353 0.78941 0.85077 0.84828 1.90684 1.65310 1.68521 1.22450 1.21495 0.98894 0.94613 1.00478 1.20197 0.96907 0.93936 0.97876 1.21262 0.95091 0.95039 0.90960 1.22250 1.01712 0.93365 1.02175 1.21999 0.93576 0.99337 0.95259 1.22492 1.01059 0.99762 0.96284 1.23209 0.95065 0.88623 1.00266 1.67438 1.09088 1.33319 1.12366 1.22595 0.87294 0.91276 0.96420 0.94273 0.91674 0.91594 0.89108 0.74755 0.86537 0.87463 0.91379 0.89185 0.83257 0.82024 0.82002 0.81005 0.95741 0.95078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.22 11.39 21.65 0.25 -59.98 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.99 46.67 29.55 68.60 2.03 48.69 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.24 -13.53 10.70 84.04 0.90 -12.63 16 8 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 9 N -0.64 -33.66 3.70 -716.66 -2.65 -36.31 16 10 C 0.12 4.77 8.69 86.49 0.75 5.52 16 11 C 0.12 4.74 4.40 46.74 0.21 4.95 16 12 N -0.71 -21.17 5.37 -447.38 -2.40 -23.57 16 13 C 0.51 15.68 7.83 87.66 0.69 16.36 16 14 O -0.59 -23.62 15.60 -3.03 -0.05 -23.67 16 15 C -0.11 -2.49 5.56 29.85 0.17 -2.32 16 16 C -0.05 -1.14 4.90 29.85 0.15 -0.99 16 17 C 0.11 2.30 6.18 42.55 0.26 2.56 16 18 C -0.18 -2.68 9.71 22.36 0.22 -2.46 16 19 C -0.08 -0.86 10.18 22.47 0.23 -0.63 16 20 C -0.18 -1.96 10.11 22.36 0.23 -1.74 16 21 C 0.09 1.32 11.18 84.67 0.95 2.27 16 22 N -0.51 -10.99 9.88 -183.88 -1.82 -12.80 16 23 C 0.15 7.62 7.32 86.44 0.63 8.25 16 24 H 0.25 15.22 8.31 -92.70 -0.77 14.45 16 25 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.07 2.22 8.11 -2.39 -0.02 2.20 16 27 H 0.09 4.00 7.51 -2.39 -0.02 3.98 16 28 H 0.42 9.47 8.71 -92.71 -0.81 8.66 16 29 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.11 2.29 7.95 -2.39 -0.02 2.27 16 31 H 0.07 1.83 8.10 -2.39 -0.02 1.81 16 32 H 0.09 1.91 7.83 -2.39 -0.02 1.89 16 33 H 0.15 1.73 7.95 -2.91 -0.02 1.70 16 34 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 35 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 36 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.03 1.83 7.17 -2.39 -0.02 1.81 16 Total: -1.00 -78.12 327.15 1.44 -76.67 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.26 Total: 15.58 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 5.84 Total: 15.39 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -6.63 Total: -132.67 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.05 Total: -23.67 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -78.12 1.44 -76.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268432655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.987 kcal (2) G-P(sol) polarization free energy of solvation -78.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds