Wall clock time and date at job start Mon Mar 30 2020 01:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00377 * 2 1 4 4 H 1.48497 * 109.47164 * 269.99899 * 3 2 1 5 5 H 1.48498 * 109.46719 * 30.00151 * 3 2 1 6 6 H 1.48500 * 109.46940 * 149.99933 * 3 2 1 7 7 C 1.38820 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99602 * 0.02562 * 7 2 1 9 9 N 1.36930 * 119.99789 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99917 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47435 * 180.02562 * 10 9 7 12 12 C 1.30999 * 120.00369 * 124.99562 * 11 10 9 13 13 C 1.50700 * 120.00207 * 179.97438 * 12 11 10 14 14 N 1.46498 * 109.46769 * 125.00304 * 13 12 11 15 15 C 1.34777 * 119.99828 * 179.72341 * 14 13 12 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 C 1.50701 * 109.47355 * 180.02562 * 17 15 14 19 19 C 1.38674 * 120.41778 * 269.72167 * 18 17 15 20 20 C 1.38624 * 118.41541 * 179.78300 * 19 18 17 21 21 C 1.38224 * 119.16477 * 0.51775 * 20 19 18 22 22 N 1.31857 * 120.76197 * 359.72055 * 21 20 19 23 23 C 1.31880 * 121.72565 * 0.02562 * 22 21 20 24 24 H 0.96999 * 119.99290 * 0.02562 * 1 2 3 25 25 H 0.97005 * 120.00447 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.47113 * 59.99642 * 10 9 7 27 27 H 1.09003 * 109.46907 * 300.00477 * 10 9 7 28 28 H 1.08008 * 119.99903 * 305.00258 * 11 10 9 29 29 H 1.08001 * 119.99918 * 0.02562 * 12 11 10 30 30 H 1.09004 * 109.47210 * 5.00662 * 13 12 11 31 31 H 1.08994 * 109.47121 * 245.00632 * 13 12 11 32 32 H 0.97001 * 120.00384 * 0.02562 * 14 13 12 33 33 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 34 34 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 35 35 H 1.07996 * 120.78725 * 0.02562 * 19 18 17 36 36 H 1.08004 * 120.41556 * 180.21687 * 20 19 18 37 37 H 1.08005 * 119.62310 * 179.75014 * 21 20 19 38 38 H 1.08004 * 119.61502 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3795 -1.2023 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.5936 -2.1958 0.0013 12 6 6.3558 -2.7162 0.9309 13 6 7.8375 -2.4414 0.9319 14 7 8.2307 -1.8881 2.2301 15 6 9.5190 -1.5688 2.4643 16 8 10.3520 -1.7349 1.5985 17 6 9.9246 -1.0055 3.8019 18 6 11.4072 -0.7352 3.8045 19 6 12.2986 -1.7143 4.2164 20 6 13.6537 -1.4226 4.1979 21 6 14.0677 -0.1708 3.7827 22 7 13.1910 0.7377 3.4024 23 6 11.8949 0.4935 3.4024 24 1 -0.4849 0.8401 -0.0004 25 1 3.8646 -0.3622 0.0011 26 1 3.8490 -3.0424 -0.8902 27 1 3.8483 -3.0428 0.8897 28 1 6.0272 -1.5693 -0.7643 29 1 5.9224 -3.3429 1.6963 30 1 8.0748 -1.7254 0.1449 31 1 8.3794 -3.3701 0.7535 32 1 7.5646 -1.7555 2.9227 33 1 9.3857 -0.0755 3.9830 34 1 9.6843 -1.7232 4.5864 35 1 11.9458 -2.6823 4.5402 36 1 14.3766 -2.1624 4.5085 37 1 15.1214 0.0657 3.7692 38 1 11.2069 1.2629 3.0844 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268527888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:00 Heat of formation + Delta-G solvation = 26.304077 kcal Electronic energy + Delta-G solvation = -19290.210072 eV Core-core repulsion = 16133.336591 eV Total energy + Delta-G solvation = -3156.873482 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.70930 -39.52755 -36.50492 -34.91799 -33.90279 -32.91040 -32.21273 -31.02089 -28.84336 -27.05368 -24.24570 -23.88076 -22.68837 -21.65152 -20.77122 -19.65345 -17.65917 -17.51437 -17.22448 -16.79980 -16.38972 -15.46985 -15.19644 -14.70179 -14.47406 -14.20028 -13.91375 -13.72022 -13.50317 -13.37288 -13.30564 -12.90129 -12.48758 -12.25677 -12.08892 -11.89314 -11.39898 -10.91699 -10.73745 -10.33567 -10.20005 -10.04633 -9.75776 -9.65781 -9.45503 -9.27105 -9.11106 -8.83204 -7.30034 -5.82098 -3.18632 0.77814 0.98930 2.10018 2.40757 3.14733 3.33865 3.37076 3.42217 3.59454 4.08021 4.32711 4.43741 4.54527 4.62017 4.65020 4.67975 4.82038 4.98322 5.03956 5.09696 5.32201 5.43060 5.45993 5.48604 5.59030 5.69472 5.77378 5.82926 5.89992 6.16799 6.30824 6.38129 6.43382 6.73090 6.95970 7.29179 7.68173 7.93014 7.99783 8.36574 9.14889 9.86989 10.06548 11.36001 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028437 B = 0.002657 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.384239 B =10534.289769 C =11185.552091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.886 3.114 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.177 3.823 11 C -0.115 4.115 12 C -0.197 4.197 13 C 0.154 3.846 14 N -0.724 5.724 15 C 0.512 3.488 16 O -0.537 6.537 17 C -0.100 4.100 18 C -0.116 4.116 19 C -0.062 4.062 20 C -0.172 4.172 21 C 0.095 3.905 22 N -0.484 5.484 23 C 0.114 3.886 24 H 0.260 0.740 25 H 0.362 0.638 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.404 0.596 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.705 -4.296 10.885 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.051 3.949 11 C -0.134 4.134 12 C -0.216 4.216 13 C 0.031 3.969 14 N -0.376 5.376 15 C 0.298 3.702 16 O -0.413 6.413 17 C -0.141 4.141 18 C -0.118 4.118 19 C -0.088 4.088 20 C -0.192 4.192 21 C -0.062 4.062 22 N -0.192 5.192 23 C -0.044 4.044 24 H 0.070 0.930 25 H 0.195 0.805 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.127 0.873 29 H 0.135 0.865 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.239 0.761 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.172 0.828 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 26.361 -3.681 9.967 28.422 hybrid contribution -0.185 0.344 0.542 0.668 sum 26.176 -3.337 10.510 28.404 Atomic orbital electron populations 1.69704 1.05104 1.25934 1.57262 1.24690 0.95271 0.97302 1.01850 0.86523 0.79159 0.84816 0.77868 1.20991 1.21636 1.20332 1.19060 0.80437 0.94843 1.43437 0.89127 1.42644 1.03965 1.01976 1.91278 1.19791 0.86086 0.89777 0.99283 1.23372 0.96698 0.96223 0.97105 1.22736 0.93783 1.03841 1.01280 1.20330 0.92856 0.98732 0.84962 1.46066 1.09020 1.65401 1.17158 1.20488 0.82256 0.78065 0.89409 1.90740 1.50606 1.53287 1.46694 1.20617 0.93172 1.03959 0.96319 1.20293 0.95113 0.95619 1.00810 1.21441 0.93119 0.98557 0.95725 1.22111 0.96416 0.98641 1.02019 1.22777 0.99533 0.89572 0.94322 1.67695 1.02932 1.34768 1.13850 1.22629 0.92047 0.95283 0.94395 0.92966 0.80516 0.94251 0.94865 0.87298 0.86486 0.91227 0.90987 0.76114 0.87288 0.87526 0.84978 0.84750 0.82815 0.82948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.07 13.97 55.49 0.78 -28.29 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.89 21.87 27.74 -169.99 -4.71 17.16 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 7 C -0.25 -6.97 10.47 -15.06 -0.16 -7.13 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.75 -17.65 5.40 -61.08 -0.33 -17.98 16 10 C 0.18 3.29 6.70 -5.19 -0.03 3.25 16 11 C -0.11 -1.66 9.24 -36.03 -0.33 -2.00 16 12 C -0.20 -2.35 9.24 -36.03 -0.33 -2.69 16 13 C 0.15 1.72 6.11 -5.19 -0.03 1.69 16 14 N -0.72 -6.99 5.55 -61.47 -0.34 -7.33 16 15 C 0.51 5.45 7.82 -10.98 -0.09 5.36 16 16 O -0.54 -8.04 16.03 5.55 0.09 -7.95 16 17 C -0.10 -0.71 5.86 -29.03 -0.17 -0.88 16 18 C -0.12 -1.06 4.39 -104.48 -0.46 -1.51 16 19 C -0.06 -0.51 9.86 -39.28 -0.39 -0.90 16 20 C -0.17 -1.32 10.11 -39.44 -0.40 -1.72 16 21 C 0.09 0.84 11.18 -17.55 -0.20 0.65 16 22 N -0.48 -5.45 10.36 -13.25 -0.14 -5.59 16 23 C 0.11 1.17 10.86 -17.55 -0.19 0.98 16 24 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 25 H 0.36 8.28 5.52 -40.82 -0.23 8.06 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.03 0.61 7.79 -51.93 -0.40 0.21 16 28 H 0.11 1.53 7.84 -52.48 -0.41 1.12 16 29 H 0.12 1.30 7.84 -52.49 -0.41 0.89 16 30 H 0.07 0.86 7.79 -51.93 -0.40 0.45 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.40 3.01 8.46 -40.82 -0.35 2.66 16 33 H 0.11 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.11 0.49 8.09 -51.93 -0.42 0.07 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 37 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 38 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 333.45 15.07 5.02 5.02 Total: -1.00 -35.56 333.45 -7.68 -43.24 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.17 Total: 6.57 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -2.87 Total: -4.85 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.03 Total: -59.19 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.09 Total: -7.95 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.56 -7.68 -43.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268527888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.544 kcal (2) G-P(sol) polarization free energy of solvation -35.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds