Wall clock time and date at job start Mon Mar 30 2020 01:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00377 * 2 1 4 4 H 1.48497 * 109.47164 * 269.99899 * 3 2 1 5 5 H 1.48498 * 109.46719 * 30.00151 * 3 2 1 6 6 H 1.48500 * 109.46940 * 149.99933 * 3 2 1 7 7 C 1.38820 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99602 * 0.02562 * 7 2 1 9 9 N 1.36930 * 119.99789 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99917 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47435 * 180.02562 * 10 9 7 12 12 C 1.30999 * 120.00369 * 124.99562 * 11 10 9 13 13 C 1.50700 * 120.00207 * 179.97438 * 12 11 10 14 14 N 1.46498 * 109.46769 * 125.00304 * 13 12 11 15 15 C 1.34777 * 119.99828 * 179.72341 * 14 13 12 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 C 1.50701 * 109.47355 * 180.02562 * 17 15 14 19 19 C 1.38674 * 120.41778 * 269.72167 * 18 17 15 20 20 C 1.38624 * 118.41541 * 179.78300 * 19 18 17 21 21 C 1.38224 * 119.16477 * 0.51775 * 20 19 18 22 22 N 1.31857 * 120.76197 * 359.72055 * 21 20 19 23 23 C 1.31880 * 121.72565 * 0.02562 * 22 21 20 24 24 H 0.96999 * 119.99290 * 0.02562 * 1 2 3 25 25 H 0.97005 * 120.00447 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.47113 * 59.99642 * 10 9 7 27 27 H 1.09003 * 109.46907 * 300.00477 * 10 9 7 28 28 H 1.08008 * 119.99903 * 305.00258 * 11 10 9 29 29 H 1.08001 * 119.99918 * 0.02562 * 12 11 10 30 30 H 1.09004 * 109.47210 * 5.00662 * 13 12 11 31 31 H 1.08994 * 109.47121 * 245.00632 * 13 12 11 32 32 H 0.97001 * 120.00384 * 0.02562 * 14 13 12 33 33 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 34 34 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 35 35 H 1.07996 * 120.78725 * 0.02562 * 19 18 17 36 36 H 1.08004 * 120.41556 * 180.21687 * 20 19 18 37 37 H 1.08005 * 119.62310 * 179.75014 * 21 20 19 38 38 H 1.08004 * 119.61502 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3795 -1.2023 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.5936 -2.1958 0.0013 12 6 6.3558 -2.7162 0.9309 13 6 7.8375 -2.4414 0.9319 14 7 8.2307 -1.8881 2.2301 15 6 9.5190 -1.5688 2.4643 16 8 10.3520 -1.7349 1.5985 17 6 9.9246 -1.0055 3.8019 18 6 11.4072 -0.7352 3.8045 19 6 12.2986 -1.7143 4.2164 20 6 13.6537 -1.4226 4.1979 21 6 14.0677 -0.1708 3.7827 22 7 13.1910 0.7377 3.4024 23 6 11.8949 0.4935 3.4024 24 1 -0.4849 0.8401 -0.0004 25 1 3.8646 -0.3622 0.0011 26 1 3.8490 -3.0424 -0.8902 27 1 3.8483 -3.0428 0.8897 28 1 6.0272 -1.5693 -0.7643 29 1 5.9224 -3.3429 1.6963 30 1 8.0748 -1.7254 0.1449 31 1 8.3794 -3.3701 0.7535 32 1 7.5646 -1.7555 2.9227 33 1 9.3857 -0.0755 3.9830 34 1 9.6843 -1.7232 4.5864 35 1 11.9458 -2.6823 4.5402 36 1 14.3766 -2.1624 4.5085 37 1 15.1214 0.0657 3.7692 38 1 11.2069 1.2629 3.0844 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268527888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:00 Heat of formation + Delta-G solvation = 0.438345 kcal Electronic energy + Delta-G solvation = -19291.331695 eV Core-core repulsion = 16133.336591 eV Total energy + Delta-G solvation = -3157.995104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.38900 -40.31875 -37.78681 -36.30004 -34.60570 -34.35921 -32.93691 -32.71353 -29.77326 -28.20547 -25.67699 -24.51047 -23.70621 -23.08902 -21.61632 -20.82306 -19.56014 -18.22205 -17.92442 -17.45529 -17.22724 -16.61549 -16.37855 -16.00375 -15.71107 -15.28896 -15.01079 -14.84585 -14.43908 -14.35994 -14.19511 -13.94552 -13.87177 -13.55596 -13.15344 -12.89788 -12.77258 -12.46401 -12.19071 -11.96434 -11.78337 -11.21878 -11.06341 -10.71330 -10.43318 -10.35312 -10.00259 -9.88713 -9.30692 -8.04220 -5.38656 0.15015 0.36851 1.04581 1.38365 1.41996 1.49587 1.62560 2.37330 2.47819 2.93393 3.27359 3.50303 3.64787 3.72471 3.90365 3.92892 4.02386 4.09320 4.11124 4.12957 4.44748 4.50566 4.57989 4.66112 4.69516 4.79075 4.88656 4.90193 4.99608 5.18882 5.30382 5.36013 5.64764 5.70606 5.79593 5.83810 6.19659 6.55399 7.03535 7.05954 7.24048 7.81140 8.00938 9.17008 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028437 B = 0.002657 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.384239 B =10534.289769 C =11185.552091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.958 3.042 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.249 1.249 7 C -0.239 4.239 8 H 0.058 0.942 9 N -0.756 5.756 10 C 0.176 3.824 11 C -0.138 4.138 12 C -0.156 4.156 13 C 0.156 3.844 14 N -0.716 5.716 15 C 0.512 3.488 16 O -0.585 6.585 17 C -0.092 4.092 18 C -0.125 4.125 19 C -0.073 4.073 20 C -0.171 4.171 21 C 0.078 3.922 22 N -0.518 5.518 23 C 0.089 3.911 24 H 0.259 0.741 25 H 0.367 0.633 26 H 0.033 0.967 27 H 0.037 0.963 28 H 0.114 0.886 29 H 0.132 0.868 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.418 0.582 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.155 0.845 36 H 0.163 0.837 37 H 0.175 0.825 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.839 -4.484 12.386 30.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.256 4.256 3 Si 0.785 3.215 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.173 1.173 7 C -0.370 4.370 8 H 0.076 0.924 9 N -0.402 5.402 10 C 0.050 3.950 11 C -0.157 4.157 12 C -0.175 4.175 13 C 0.032 3.968 14 N -0.369 5.369 15 C 0.300 3.700 16 O -0.465 6.465 17 C -0.132 4.132 18 C -0.127 4.127 19 C -0.099 4.099 20 C -0.190 4.190 21 C -0.078 4.078 22 N -0.227 5.227 23 C -0.068 4.068 24 H 0.068 0.932 25 H 0.200 0.800 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.132 0.868 29 H 0.150 0.850 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.255 0.745 33 H 0.148 0.852 34 H 0.157 0.843 35 H 0.172 0.828 36 H 0.181 0.819 37 H 0.192 0.808 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 28.520 -3.898 11.494 30.995 hybrid contribution -0.798 0.234 0.100 0.838 sum 27.722 -3.664 11.594 30.271 Atomic orbital electron populations 1.69888 1.07176 1.26820 1.59424 1.25562 0.96183 1.01464 1.02441 0.85360 0.78716 0.79315 0.78086 1.20628 1.22102 1.17322 1.19056 0.82635 0.93604 1.41710 0.92431 1.42670 1.02402 1.04095 1.91070 1.19877 0.88380 0.87705 0.98990 1.23011 0.94339 0.99136 0.99261 1.22822 0.93811 1.01216 0.99653 1.20209 0.92065 0.98822 0.85654 1.45962 1.09290 1.64783 1.16817 1.21067 0.81758 0.77075 0.90099 1.90727 1.51884 1.55375 1.48493 1.20672 0.92051 1.05606 0.94835 1.20519 0.96417 0.95297 1.00512 1.21845 0.93382 0.99306 0.95323 1.22465 0.97049 0.98668 1.00868 1.23231 1.00325 0.89998 0.94295 1.67657 1.03737 1.36207 1.15101 1.22851 0.92123 0.96380 0.95399 0.93241 0.79958 0.94905 0.94512 0.86811 0.85029 0.92291 0.90571 0.74522 0.85162 0.84318 0.82760 0.81929 0.80835 0.82592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.63 13.97 21.65 0.30 -62.33 16 2 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.96 44.82 27.74 68.60 1.90 46.72 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.25 -10.35 6.52 99.48 0.65 -9.70 16 7 C -0.24 -13.56 10.47 84.04 0.88 -12.68 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 9 N -0.76 -34.64 5.40 -347.17 -1.87 -36.51 16 10 C 0.18 6.32 6.70 85.63 0.57 6.89 16 11 C -0.14 -3.71 9.24 25.65 0.24 -3.47 16 12 C -0.16 -3.24 9.24 25.65 0.24 -3.00 16 13 C 0.16 3.07 6.11 85.63 0.52 3.59 16 14 N -0.72 -11.55 5.55 -466.79 -2.59 -14.14 16 15 C 0.51 9.62 7.82 87.66 0.69 10.31 16 16 O -0.58 -16.76 16.03 -3.04 -0.05 -16.81 16 17 C -0.09 -1.01 5.86 29.10 0.17 -0.84 16 18 C -0.13 -2.05 4.39 -19.77 -0.09 -2.13 16 19 C -0.07 -1.03 9.86 22.47 0.22 -0.81 16 20 C -0.17 -2.29 10.11 22.36 0.23 -2.06 16 21 C 0.08 1.31 11.18 84.69 0.95 2.26 16 22 N -0.52 -11.55 10.36 -195.84 -2.03 -13.58 16 23 C 0.09 1.79 10.86 84.67 0.92 2.71 16 24 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 25 H 0.37 15.97 5.52 -92.70 -0.51 15.45 16 26 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.04 1.30 7.79 -2.39 -0.02 1.28 16 28 H 0.11 2.97 7.84 -2.91 -0.02 2.94 16 29 H 0.13 2.42 7.84 -2.91 -0.02 2.39 16 30 H 0.06 1.33 7.79 -2.38 -0.02 1.31 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.42 4.56 8.46 -92.71 -0.78 3.77 16 33 H 0.13 0.90 8.09 -2.39 -0.02 0.88 16 34 H 0.14 0.65 8.09 -2.39 -0.02 0.63 16 35 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 37 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -78.84 333.45 1.38 -77.46 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -0.28 Total: 21.77 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 6.00 Total: -2.58 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -6.19 Total: -126.57 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.05 Total: -16.81 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.90 Total: 46.72 kcal Total: -78.84 1.38 -77.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268527888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.895 kcal (2) G-P(sol) polarization free energy of solvation -78.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds