Wall clock time and date at job start Mon Mar 30 2020 01:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00477 * 2 1 4 4 H 1.48500 * 109.47131 * 240.00089 * 3 2 1 5 5 H 1.48500 * 109.46876 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47190 * 119.99564 * 3 2 1 7 7 C 1.38814 * 119.99141 * 179.97438 * 2 1 3 8 8 H 1.08012 * 119.99207 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00629 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00052 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47221 * 179.97438 * 10 9 7 12 12 C 1.30993 * 119.99737 * 127.00212 * 11 10 9 13 13 C 1.50701 * 120.00136 * 7.56700 * 12 11 10 14 14 N 1.46501 * 109.47044 * 127.15392 * 13 12 11 15 15 C 1.34776 * 119.99866 * 179.72266 * 14 13 12 16 16 O 1.21279 * 119.99964 * 0.27863 * 15 14 13 17 17 C 1.50702 * 120.00087 * 180.27201 * 15 14 13 18 18 C 1.50700 * 109.47227 * 180.02562 * 17 15 14 19 19 C 1.38677 * 120.41626 * 269.72097 * 18 17 15 20 20 C 1.38621 * 118.41876 * 179.78131 * 19 18 17 21 21 C 1.38231 * 119.16435 * 0.51631 * 20 19 18 22 22 N 1.31852 * 120.75783 * 359.72500 * 21 20 19 23 23 C 1.31885 * 121.72860 * 359.97438 * 22 21 20 24 24 H 0.97003 * 119.99419 * 0.02562 * 1 2 3 25 25 H 0.96993 * 119.99399 * 359.97438 * 9 7 2 26 26 H 1.09005 * 109.46811 * 59.99780 * 10 9 7 27 27 H 1.08999 * 109.47161 * 299.99967 * 10 9 7 28 28 H 1.08005 * 119.99767 * 307.00997 * 11 10 9 29 29 H 1.08004 * 119.99876 * 187.56154 * 12 11 10 30 30 H 1.08999 * 109.47140 * 7.15131 * 13 12 11 31 31 H 1.08999 * 109.46860 * 247.14624 * 13 12 11 32 32 H 0.96996 * 120.00325 * 359.97438 * 14 13 12 33 33 H 1.08995 * 109.47075 * 300.00278 * 17 15 14 34 34 H 1.09006 * 109.46939 * 60.00207 * 17 15 14 35 35 H 1.08003 * 120.78904 * 0.02714 * 19 18 17 36 36 H 1.08010 * 120.41992 * 180.22117 * 20 19 18 37 37 H 1.07998 * 119.61742 * 179.74887 * 21 20 19 38 38 H 1.08003 * 119.61583 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0785 -4.8023 0.0012 12 6 1.1715 -5.7440 -0.9047 13 6 2.3531 -5.7764 -1.8394 14 7 2.9747 -7.1023 -1.7950 15 6 4.0528 -7.3670 -2.5592 16 8 4.5115 -6.5060 -3.2798 17 6 4.6885 -8.7327 -2.5182 18 6 5.8672 -8.7666 -3.4566 19 6 5.7007 -9.1481 -4.7794 20 6 6.8124 -9.1600 -5.6075 21 6 8.0430 -8.8042 -5.0882 22 7 8.1648 -8.4516 -3.8235 23 6 7.1283 -8.4230 -3.0085 24 1 -0.4849 0.8401 -0.0004 25 1 0.3554 -2.3880 0.0005 26 1 2.6845 -3.7146 0.8906 27 1 2.6845 -3.7147 -0.8894 28 1 0.2999 -4.8467 0.7484 29 1 0.4013 -6.4973 -0.9815 30 1 3.0797 -5.0240 -1.5327 31 1 2.0186 -5.5658 -2.8552 32 1 2.6081 -7.7907 -1.2185 33 1 5.0258 -8.9462 -1.5040 34 1 3.9587 -9.4825 -2.8238 35 1 4.7274 -9.4254 -5.1566 36 1 6.7190 -9.4483 -6.6442 37 1 8.9147 -8.8149 -5.7257 38 1 7.2671 -8.1292 -1.9786 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268527889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:03 Heat of formation + Delta-G solvation = 4.863791 kcal Electronic energy + Delta-G solvation = -19513.196981 eV Core-core repulsion = 16355.393779 eV Total energy + Delta-G solvation = -3157.803202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37922 -40.32692 -37.98292 -36.10165 -34.60579 -34.31098 -32.83178 -32.33119 -29.47811 -27.71139 -26.24633 -24.50282 -24.40913 -23.38747 -21.46604 -20.11699 -19.02344 -18.02984 -17.81803 -17.59657 -17.37481 -16.69064 -16.42070 -15.97956 -15.52130 -15.41260 -15.07443 -14.89556 -14.39891 -14.25153 -14.14030 -13.97359 -13.92959 -13.36558 -12.97401 -12.91644 -12.71823 -12.44784 -12.23503 -11.91773 -11.66415 -11.16614 -11.01916 -10.69776 -10.41289 -10.30909 -9.94537 -9.86268 -9.01223 -7.99526 -5.29038 0.15879 0.37846 1.06892 1.45220 1.48536 1.54812 1.66080 2.37552 2.54827 2.94556 3.33774 3.51400 3.73526 3.80709 3.94288 4.04774 4.10843 4.13794 4.15056 4.16800 4.34794 4.50749 4.59106 4.62195 4.79070 4.85987 4.90263 4.90458 5.08955 5.19626 5.31258 5.40568 5.43728 5.58881 5.80665 5.86858 6.23435 6.61284 7.04519 7.29262 7.31094 8.03144 8.27911 9.23698 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022976 B = 0.002839 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.388286 B = 9860.473230 C =10707.576576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.975 3.025 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.253 4.253 8 H 0.072 0.928 9 N -0.741 5.741 10 C 0.161 3.839 11 C -0.137 4.137 12 C -0.156 4.156 13 C 0.140 3.860 14 N -0.707 5.707 15 C 0.507 3.493 16 O -0.590 6.590 17 C -0.086 4.086 18 C -0.126 4.126 19 C -0.073 4.073 20 C -0.173 4.173 21 C 0.077 3.923 22 N -0.519 5.519 23 C 0.089 3.911 24 H 0.254 0.746 25 H 0.376 0.624 26 H 0.024 0.976 27 H 0.031 0.969 28 H 0.125 0.875 29 H 0.153 0.847 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.421 0.579 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.162 0.838 37 H 0.174 0.826 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.084 -26.869 -6.826 28.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.803 3.197 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.385 4.385 8 H 0.090 0.910 9 N -0.384 5.384 10 C 0.035 3.965 11 C -0.156 4.156 12 C -0.175 4.175 13 C 0.017 3.983 14 N -0.360 5.360 15 C 0.294 3.706 16 O -0.470 6.470 17 C -0.126 4.126 18 C -0.129 4.129 19 C -0.099 4.099 20 C -0.192 4.192 21 C -0.079 4.079 22 N -0.228 5.228 23 C -0.068 4.068 24 H 0.062 0.938 25 H 0.208 0.792 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.143 0.857 29 H 0.171 0.829 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.258 0.742 33 H 0.154 0.846 34 H 0.160 0.840 35 H 0.173 0.827 36 H 0.180 0.820 37 H 0.191 0.809 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.395 -25.921 -7.004 28.446 hybrid contribution -0.986 0.946 -0.038 1.367 sum 8.408 -24.975 -7.042 27.277 Atomic orbital electron populations 1.69806 1.06547 1.26364 1.59040 1.25596 0.96500 1.01149 1.03284 0.85193 0.77276 0.78966 0.78226 1.20605 1.21640 1.20163 1.19598 0.91443 0.85440 1.42010 0.90989 1.42467 1.05693 1.00785 1.89485 1.20083 0.93813 0.84494 0.98098 1.23034 0.99498 0.94628 0.98456 1.22803 0.98235 1.01245 0.95225 1.20325 0.93860 0.85220 0.98924 1.45817 1.30458 1.14514 1.45253 1.21250 0.79811 0.90708 0.78789 1.90756 1.63826 1.50122 1.42248 1.20659 0.95899 0.93710 1.02315 1.20552 0.95668 1.00568 0.96079 1.21855 1.00340 0.95174 0.92547 1.22467 0.93270 1.01036 1.02424 1.23222 0.98651 0.94483 0.91551 1.67651 1.34696 1.14372 1.06032 1.22877 0.88448 0.95290 1.00136 0.93773 0.79206 0.95857 0.95183 0.85734 0.82928 0.92423 0.92291 0.74161 0.84645 0.83994 0.82742 0.81996 0.80889 0.82445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.15 13.06 21.65 0.28 -59.87 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.25 -14.74 9.99 84.03 0.84 -13.90 16 8 H 0.07 4.06 7.83 -2.90 -0.02 4.04 16 9 N -0.74 -39.12 5.59 -347.16 -1.94 -41.06 16 10 C 0.16 6.63 6.35 85.63 0.54 7.17 16 11 C -0.14 -4.19 9.63 25.65 0.25 -3.94 16 12 C -0.16 -3.67 9.63 25.65 0.25 -3.42 16 13 C 0.14 3.70 5.76 85.63 0.49 4.20 16 14 N -0.71 -12.96 5.55 -466.79 -2.59 -15.55 16 15 C 0.51 10.93 7.82 87.66 0.69 11.61 16 16 O -0.59 -19.88 16.03 -3.03 -0.05 -19.93 16 17 C -0.09 -1.00 5.86 29.10 0.17 -0.83 16 18 C -0.13 -2.25 4.39 -19.77 -0.09 -2.34 16 19 C -0.07 -1.17 9.86 22.47 0.22 -0.95 16 20 C -0.17 -2.65 10.11 22.36 0.23 -2.42 16 21 C 0.08 1.45 11.18 84.69 0.95 2.40 16 22 N -0.52 -12.50 10.36 -195.85 -2.03 -14.53 16 23 C 0.09 1.93 10.86 84.67 0.92 2.85 16 24 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 25 H 0.38 20.75 7.66 -92.71 -0.71 20.04 16 26 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.03 1.29 5.30 -2.39 -0.01 1.28 16 28 H 0.12 3.55 8.06 -2.91 -0.02 3.52 16 29 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.06 1.92 5.30 -2.39 -0.01 1.91 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.42 4.14 8.46 -92.71 -0.78 3.36 16 33 H 0.14 0.84 8.09 -2.39 -0.02 0.82 16 34 H 0.14 0.62 8.09 -2.38 -0.02 0.60 16 35 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 37 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 38 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -80.85 332.08 1.21 -79.64 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.41 Total: 25.36 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 5.92 Total: -3.40 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -6.28 Total: -131.01 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.05 Total: -19.93 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -80.85 1.21 -79.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268527889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.507 kcal (2) G-P(sol) polarization free energy of solvation -80.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds