Wall clock time and date at job start Mon Mar 30 2020 01:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48502 * 109.47116 * 239.99841 * 3 2 1 5 5 H 1.48494 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46650 * 120.00229 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 C 1.53004 * 113.73988 * 269.15247 * 11 10 9 13 13 N 1.46501 * 109.46877 * 183.07251 * 12 11 10 14 14 C 1.34779 * 119.99823 * 180.02562 * 13 12 11 15 15 O 1.21275 * 119.99833 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99677 * 180.02562 * 14 13 12 17 17 C 1.50702 * 109.46679 * 180.02562 * 16 14 13 18 18 C 1.38679 * 120.41562 * 269.71707 * 17 16 14 19 19 C 1.38626 * 118.42096 * 179.78462 * 18 17 16 20 20 C 1.38227 * 119.15802 * 0.51458 * 19 18 17 21 21 N 1.31857 * 120.76447 * 359.72317 * 20 19 18 22 22 C 1.31879 * 121.72600 * 0.02562 * 21 20 19 23 23 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 24 24 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 25 25 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 26 26 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 27 27 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 28 28 H 1.08998 * 109.46823 * 303.07465 * 12 11 10 29 29 H 1.08998 * 109.46745 * 63.07477 * 12 11 10 30 30 H 0.97000 * 119.99767 * 0.02562 * 13 12 11 31 31 H 1.09002 * 109.46960 * 299.99752 * 16 14 13 32 32 H 1.08997 * 109.47295 * 59.99878 * 16 14 13 33 33 H 1.08002 * 120.78630 * 0.02616 * 18 17 16 34 34 H 1.07999 * 120.41755 * 180.22294 * 19 18 17 35 35 H 1.08001 * 119.61709 * 179.74473 * 20 19 18 36 36 H 1.08001 * 119.62211 * 179.97438 * 22 21 20 37 37 H 1.08999 * 113.77157 * 90.38334 * 23 9 7 38 38 H 1.09002 * 113.84143 * 318.91597 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 6 0.3629 -4.0572 2.1671 13 7 -0.9679 -4.3990 2.6756 14 6 -1.1920 -4.4384 4.0040 15 8 -0.2920 -4.1913 4.7784 16 6 -2.5608 -4.7905 4.5270 17 6 -2.5450 -4.7635 6.0337 18 6 -2.2391 -5.9089 6.7533 19 6 -2.2322 -5.8362 8.1376 20 6 -2.5388 -4.6358 8.7505 21 7 -2.8298 -3.5677 8.0342 22 6 -2.8411 -3.5989 6.7158 23 6 -0.1058 -2.7570 0.0001 24 1 -0.4850 0.8401 -0.0004 25 1 2.5619 -4.0327 0.6538 26 1 1.8325 -4.2346 -0.9996 27 1 -0.1594 -4.9598 0.2327 28 1 1.0896 -4.7815 2.5350 29 1 0.6380 -3.0600 2.5105 30 1 -1.6876 -4.5970 2.0561 31 1 -3.2878 -4.0667 4.1586 32 1 -2.8353 -5.7880 4.1840 33 1 -2.0079 -6.8345 6.2471 34 1 -1.9948 -6.7077 8.7297 35 1 -2.5396 -4.5719 9.8286 36 1 -3.0848 -2.7038 6.1627 37 1 -0.5312 -2.8713 -0.9969 38 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268818680.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:57 Heat of formation + Delta-G solvation = 25.654929 kcal Electronic energy + Delta-G solvation = -20330.658377 eV Core-core repulsion = 17173.756746 eV Total energy + Delta-G solvation = -3156.901631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37533 -40.47979 -39.53920 -35.62753 -34.53250 -34.13431 -32.80771 -30.61654 -29.10293 -27.16363 -26.49910 -24.49173 -24.27850 -23.25605 -21.46436 -20.25891 -18.73994 -18.06887 -17.83596 -17.45557 -17.24067 -16.93979 -16.31942 -15.94643 -15.65017 -15.46532 -14.86688 -14.59194 -14.30189 -14.21795 -14.06549 -13.91407 -13.34749 -13.04572 -12.91167 -12.83454 -12.53829 -12.42014 -12.26372 -11.81571 -11.49050 -11.29447 -11.03666 -10.84999 -10.64769 -10.38941 -10.01141 -9.88696 -8.88069 -7.90175 -5.21155 0.17360 0.39121 1.42760 1.45967 1.51488 1.69915 2.27005 2.47401 2.93779 3.31208 3.46371 3.52285 3.73046 3.75399 3.95524 3.99304 4.08649 4.13101 4.15622 4.51402 4.54398 4.60515 4.64586 4.79267 4.81055 4.89166 4.92638 5.03035 5.12824 5.20566 5.27058 5.32987 5.47323 5.57954 5.66993 5.81942 5.97954 6.65534 6.94473 7.05296 7.34570 7.62874 8.58689 9.26272 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022569 B = 0.003675 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.330231 B = 7618.177278 C = 8368.793847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.078 0.922 9 N -0.645 5.645 10 C 0.123 3.877 11 C -0.117 4.117 12 C 0.160 3.840 13 N -0.711 5.711 14 C 0.508 3.492 15 O -0.591 6.591 16 C -0.088 4.088 17 C -0.124 4.124 18 C -0.071 4.071 19 C -0.170 4.170 20 C 0.077 3.923 21 N -0.519 5.519 22 C 0.086 3.914 23 C 0.162 3.838 24 H 0.247 0.753 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.118 0.882 28 H 0.066 0.934 29 H 0.026 0.974 30 H 0.418 0.582 31 H 0.128 0.872 32 H 0.146 0.854 33 H 0.158 0.842 34 H 0.166 0.834 35 H 0.176 0.824 36 H 0.151 0.849 37 H 0.024 0.976 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.907 -17.454 9.869 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.800 3.200 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.363 4.363 8 H 0.096 0.904 9 N -0.373 5.373 10 C -0.002 4.002 11 C -0.137 4.137 12 C 0.035 3.965 13 N -0.363 5.363 14 C 0.295 3.705 15 O -0.472 6.472 16 C -0.127 4.127 17 C -0.127 4.127 18 C -0.097 4.097 19 C -0.189 4.189 20 C -0.079 4.079 21 N -0.228 5.228 22 C -0.071 4.071 23 C 0.037 3.963 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.135 0.865 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.255 0.745 31 H 0.146 0.854 32 H 0.163 0.837 33 H 0.176 0.824 34 H 0.184 0.816 35 H 0.193 0.807 36 H 0.168 0.832 37 H 0.041 0.959 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.419 -16.163 10.830 21.199 hybrid contribution 0.551 0.764 -0.961 1.345 sum -7.868 -15.399 9.869 19.910 Atomic orbital electron populations 1.69964 1.06163 1.25412 1.58384 1.25523 0.96570 1.00538 1.03269 0.85258 0.77302 0.79355 0.78093 1.20205 1.21921 1.20817 1.19358 0.90734 0.83816 1.42437 0.90393 1.46442 1.03904 1.00564 1.86375 1.22777 0.95760 0.83592 0.98080 1.23132 0.98303 0.98834 0.93404 1.20702 0.84430 0.98832 0.92514 1.45863 1.13389 1.70019 1.07002 1.21200 0.91125 0.76168 0.81966 1.90716 1.47873 1.50958 1.57619 1.20661 0.93478 1.07762 0.90841 1.20525 1.00795 0.95014 0.96329 1.21857 0.94332 0.98795 0.94673 1.22481 1.00631 1.00297 0.95530 1.23258 0.94762 0.88478 1.01450 1.67642 1.14635 1.32161 1.08341 1.22802 0.96162 0.97712 0.90381 1.22306 0.86855 0.90892 0.96285 0.94435 0.93070 0.92342 0.86461 0.91559 0.95550 0.74527 0.85432 0.83662 0.82436 0.81618 0.80671 0.83189 0.95860 0.94006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.78 11.39 21.65 0.25 -57.54 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 3 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 7 C -0.23 -13.45 10.70 84.03 0.90 -12.55 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.65 -32.75 3.59 -716.13 -2.57 -35.32 16 10 C 0.12 4.65 8.51 86.49 0.74 5.38 16 11 C -0.12 -3.81 3.99 -10.14 -0.04 -3.85 16 12 C 0.16 5.40 5.42 86.38 0.47 5.87 16 13 N -0.71 -18.43 5.56 -463.05 -2.57 -21.00 16 14 C 0.51 14.05 7.82 87.66 0.69 14.74 16 15 O -0.59 -22.95 16.03 -3.01 -0.05 -22.99 16 16 C -0.09 -1.50 5.86 29.10 0.17 -1.33 16 17 C -0.12 -2.72 4.39 -19.77 -0.09 -2.81 16 18 C -0.07 -1.30 9.86 22.47 0.22 -1.08 16 19 C -0.17 -2.91 10.11 22.36 0.23 -2.69 16 20 C 0.08 1.62 11.18 84.69 0.95 2.56 16 21 N -0.52 -14.23 10.36 -195.85 -2.03 -16.26 16 22 C 0.09 2.25 10.86 84.67 0.92 3.17 16 23 C 0.16 7.23 7.03 86.44 0.61 7.84 16 24 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 25 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.03 1.19 7.98 -2.39 -0.02 1.17 16 30 H 0.42 7.66 8.47 -92.71 -0.79 6.88 16 31 H 0.13 1.70 8.09 -2.39 -0.02 1.69 16 32 H 0.15 1.29 8.09 -2.39 -0.02 1.27 16 33 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 35 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 36 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.04 2.14 7.12 -2.39 -0.02 2.12 16 Total: -1.00 -81.12 327.84 1.55 -79.57 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.28 Total: 12.51 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 6.22 Total: 11.89 kcal Atomic # 7 Polarization: -123.20 SS G_CDS: -6.92 Total: -130.12 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.05 Total: -22.99 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -81.12 1.55 -79.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268818680.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.226 kcal (2) G-P(sol) polarization free energy of solvation -81.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds