Wall clock time and date at job start Mon Mar 30 2020 02:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48497 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47001 * 299.99904 * 3 2 1 6 6 H 1.48499 * 109.47209 * 59.99747 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.09001 * 113.46506 * 267.40214 * 12 9 7 14 14 C 1.53001 * 113.46558 * 37.83696 * 12 9 7 15 15 N 1.46504 * 109.46966 * 285.49627 * 14 12 9 16 16 C 1.34779 * 119.99668 * 180.02562 * 15 14 12 17 17 O 1.21786 * 119.99981 * 359.97438 * 16 15 14 18 18 C 1.41516 * 119.99875 * 180.02562 * 16 15 14 19 19 C 1.35617 * 120.00071 * 180.02562 * 18 16 15 20 20 C 1.41667 * 119.99998 * 179.97438 * 19 18 16 21 21 C 1.38283 * 126.25776 * 179.97438 * 20 19 18 22 22 C 1.39792 * 107.07878 * 179.97438 * 21 20 19 23 23 C 1.35505 * 107.90861 * 0.02562 * 22 21 20 24 24 N 1.35757 * 108.90883 * 359.76857 * 23 22 21 25 25 H 0.96996 * 125.68820 * 180.23035 * 24 23 22 26 26 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 27 27 H 1.09003 * 113.46750 * 322.15715 * 10 9 7 28 28 H 1.09000 * 113.47312 * 92.60160 * 10 9 7 29 29 H 1.08996 * 114.20600 * 220.34475 * 11 10 9 30 30 H 1.08998 * 114.38368 * 87.53582 * 11 10 9 31 31 H 1.09002 * 109.47370 * 45.49563 * 14 12 9 32 32 H 1.09003 * 109.46961 * 165.49707 * 14 12 9 33 33 H 0.96999 * 120.00354 * 0.02562 * 15 14 12 34 34 H 1.07998 * 119.99974 * 359.97438 * 18 16 15 35 35 H 1.07998 * 119.99955 * 359.97438 * 19 18 16 36 36 H 1.08001 * 126.46485 * 359.95261 * 21 20 19 37 37 H 1.07993 * 126.04752 * 180.02562 * 22 21 20 38 38 H 1.08000 * 125.54455 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3445 -4.0911 0.7061 12 6 1.6797 -3.8155 0.0005 13 1 1.7403 -4.2477 -0.9983 14 6 2.9022 -4.1398 0.8615 15 7 4.1160 -3.6902 0.1751 16 6 5.3216 -3.8729 0.7492 17 8 5.4020 -4.4114 1.8386 18 6 6.4940 -3.4381 0.0865 19 6 7.7072 -3.6224 0.6639 20 6 8.8809 -3.1876 0.0003 21 6 10.1769 -3.3088 0.4671 22 6 11.0161 -2.7508 -0.5017 23 6 10.2398 -2.3077 -1.5201 24 7 8.9402 -2.5714 -1.2296 25 1 8.1800 -2.3594 -1.7936 26 1 -0.4849 0.8401 -0.0004 27 1 -0.7200 -2.1579 0.6255 28 1 -0.4978 -2.9554 -0.9903 29 1 -0.1719 -4.9834 0.3522 30 1 0.3904 -4.0224 1.7929 31 1 2.8169 -3.6293 1.8207 32 1 2.9555 -5.2160 1.0261 33 1 4.0519 -3.2609 -0.6924 34 1 6.4226 -2.9602 -0.8793 35 1 7.7786 -4.1007 1.6296 36 1 10.4831 -3.7508 1.4038 37 1 12.0926 -2.6846 -0.4480 38 1 10.5972 -1.8270 -2.4188 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269223160.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:33 Heat of formation + Delta-G solvation = 83.216926 kcal Electronic energy + Delta-G solvation = -20293.113017 eV Core-core repulsion = 17138.707462 eV Total energy + Delta-G solvation = -3154.405555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27400 -39.48595 -38.11376 -34.13706 -33.70892 -32.23940 -31.25852 -29.14110 -28.01408 -27.27360 -23.76140 -23.49371 -21.78184 -20.93711 -20.43096 -19.70353 -19.08615 -17.78258 -17.04674 -16.35132 -15.57163 -15.29024 -14.62847 -14.38634 -14.26303 -14.04173 -13.90790 -13.67223 -13.25476 -12.94251 -12.56915 -12.31459 -12.05761 -11.90964 -11.55796 -11.13535 -11.00474 -10.81120 -10.57649 -10.33015 -10.01974 -9.84578 -9.68395 -9.22034 -9.17906 -8.84768 -8.54458 -7.77140 -6.92585 -5.80153 -3.12536 0.65929 2.38535 2.90168 3.03013 3.34311 3.39453 3.42430 3.69178 3.79230 4.40258 4.84053 4.91322 4.99204 5.14541 5.18690 5.27866 5.37328 5.50008 5.56640 5.73176 5.77604 5.91027 5.93245 6.11055 6.16783 6.24544 6.35526 6.40890 6.58981 6.71800 6.72582 6.82691 6.93965 7.20679 7.26740 7.37748 7.55410 7.94491 7.96396 8.62484 8.99905 9.67044 10.60278 11.37195 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.004321 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.861988 B = 6478.180298 C = 7764.229186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.213 4.213 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.122 3.878 15 N -0.710 5.710 16 C 0.546 3.454 17 O -0.562 6.562 18 C -0.232 4.232 19 C 0.015 3.985 20 C 0.011 3.989 21 C -0.148 4.148 22 C -0.209 4.209 23 C 0.010 3.990 24 N -0.544 5.544 25 H 0.418 0.582 26 H 0.253 0.747 27 H 0.072 0.928 28 H 0.025 0.975 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.402 0.598 34 H 0.113 0.887 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.420 -7.415 -3.742 17.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.340 4.340 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.359 5.359 16 C 0.337 3.663 17 O -0.444 6.444 18 C -0.254 4.254 19 C -0.006 4.006 20 C -0.099 4.099 21 C -0.173 4.173 22 C -0.233 4.233 23 C -0.125 4.125 24 N -0.138 5.138 25 H 0.256 0.744 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.236 0.764 34 H 0.131 0.869 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 15.337 -7.379 -3.074 17.295 hybrid contribution 0.042 1.431 -0.991 1.741 sum 15.380 -5.948 -4.065 16.983 Atomic orbital electron populations 1.69838 1.04962 1.25156 1.56521 1.24775 0.95642 0.97410 1.02605 0.86105 0.78661 0.84020 0.77321 1.20605 1.21790 1.21647 1.18897 0.90025 0.81359 1.43763 0.90175 1.45664 1.02625 0.98598 1.85911 1.22026 0.88687 0.90222 0.96475 1.23664 0.96949 0.99027 1.00382 1.22422 0.92124 0.87708 0.95829 0.93507 1.21781 0.83244 0.98195 0.97097 1.45904 1.06121 1.60585 1.23254 1.16900 0.84067 0.79707 0.85672 1.90795 1.87587 1.44896 1.21146 1.21843 0.93522 1.07961 1.02081 1.20804 0.89152 0.92281 0.98337 1.18341 0.95265 1.07707 0.88617 1.21509 0.90868 1.04382 1.00590 1.20870 0.99489 1.07217 0.95722 1.22048 0.82847 1.05904 1.01708 1.42234 1.08524 1.46359 1.16707 0.74437 0.93725 0.90994 0.95734 0.92367 0.90184 0.91106 0.92290 0.76389 0.86863 0.83260 0.83855 0.84301 0.81556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 11.51 55.49 0.64 -26.28 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.21 -5.71 10.55 -15.06 -0.16 -5.87 16 8 H 0.08 2.07 7.51 -52.49 -0.39 1.67 16 9 N -0.60 -14.67 3.65 -176.98 -0.65 -15.32 16 10 C 0.15 3.47 7.39 -8.50 -0.06 3.41 16 11 C -0.16 -2.95 8.03 -26.21 -0.21 -3.16 16 12 C 0.13 2.45 4.10 -72.39 -0.30 2.16 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 14 C 0.12 2.25 5.52 -4.04 -0.02 2.23 16 15 N -0.71 -12.34 5.32 -63.25 -0.34 -12.67 16 16 C 0.55 9.53 7.56 -15.01 -0.11 9.42 16 17 O -0.56 -11.53 16.11 5.11 0.08 -11.45 16 18 C -0.23 -3.20 9.39 -39.27 -0.37 -3.57 16 19 C 0.01 0.19 9.40 -39.21 -0.37 -0.18 16 20 C 0.01 0.13 6.74 -83.91 -0.57 -0.44 16 21 C -0.15 -1.57 10.86 -38.98 -0.42 -1.99 16 22 C -0.21 -1.94 10.81 -39.98 -0.43 -2.37 16 23 C 0.01 0.08 11.90 -16.79 -0.20 -0.12 16 24 N -0.54 -5.17 5.94 -10.56 -0.06 -5.23 16 25 H 0.42 3.18 7.87 -40.82 -0.32 2.86 16 26 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 27 H 0.07 1.84 7.13 -51.93 -0.37 1.47 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 31 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.40 6.57 8.34 -40.82 -0.34 6.23 16 34 H 0.11 1.28 6.93 -52.49 -0.36 0.92 16 35 H 0.15 1.94 7.46 -52.49 -0.39 1.55 16 36 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -33.33 327.70 -8.85 -42.18 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.12 Total: 7.68 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -3.32 Total: -0.80 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.41 Total: -59.50 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.33 -8.85 -42.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269223160.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.400 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds