Wall clock time and date at job start Mon Mar 30 2020 02:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48497 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47001 * 299.99904 * 3 2 1 6 6 H 1.48499 * 109.47209 * 59.99747 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.09001 * 113.46506 * 267.40214 * 12 9 7 14 14 C 1.53001 * 113.46558 * 37.83696 * 12 9 7 15 15 N 1.46504 * 109.46966 * 285.49627 * 14 12 9 16 16 C 1.34779 * 119.99668 * 180.02562 * 15 14 12 17 17 O 1.21786 * 119.99981 * 359.97438 * 16 15 14 18 18 C 1.41516 * 119.99875 * 180.02562 * 16 15 14 19 19 C 1.35617 * 120.00071 * 180.02562 * 18 16 15 20 20 C 1.41667 * 119.99998 * 179.97438 * 19 18 16 21 21 C 1.38283 * 126.25776 * 179.97438 * 20 19 18 22 22 C 1.39792 * 107.07878 * 179.97438 * 21 20 19 23 23 C 1.35505 * 107.90861 * 0.02562 * 22 21 20 24 24 N 1.35757 * 108.90883 * 359.76857 * 23 22 21 25 25 H 0.96996 * 125.68820 * 180.23035 * 24 23 22 26 26 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 27 27 H 1.09003 * 113.46750 * 322.15715 * 10 9 7 28 28 H 1.09000 * 113.47312 * 92.60160 * 10 9 7 29 29 H 1.08996 * 114.20600 * 220.34475 * 11 10 9 30 30 H 1.08998 * 114.38368 * 87.53582 * 11 10 9 31 31 H 1.09002 * 109.47370 * 45.49563 * 14 12 9 32 32 H 1.09003 * 109.46961 * 165.49707 * 14 12 9 33 33 H 0.96999 * 120.00354 * 0.02562 * 15 14 12 34 34 H 1.07998 * 119.99974 * 359.97438 * 18 16 15 35 35 H 1.07998 * 119.99955 * 359.97438 * 19 18 16 36 36 H 1.08001 * 126.46485 * 359.95261 * 21 20 19 37 37 H 1.07993 * 126.04752 * 180.02562 * 22 21 20 38 38 H 1.08000 * 125.54455 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3445 -4.0911 0.7061 12 6 1.6797 -3.8155 0.0005 13 1 1.7403 -4.2477 -0.9983 14 6 2.9022 -4.1398 0.8615 15 7 4.1160 -3.6902 0.1751 16 6 5.3216 -3.8729 0.7492 17 8 5.4020 -4.4114 1.8386 18 6 6.4940 -3.4381 0.0865 19 6 7.7072 -3.6224 0.6639 20 6 8.8809 -3.1876 0.0003 21 6 10.1769 -3.3088 0.4671 22 6 11.0161 -2.7508 -0.5017 23 6 10.2398 -2.3077 -1.5201 24 7 8.9402 -2.5714 -1.2296 25 1 8.1800 -2.3594 -1.7936 26 1 -0.4849 0.8401 -0.0004 27 1 -0.7200 -2.1579 0.6255 28 1 -0.4978 -2.9554 -0.9903 29 1 -0.1719 -4.9834 0.3522 30 1 0.3904 -4.0224 1.7929 31 1 2.8169 -3.6293 1.8207 32 1 2.9555 -5.2160 1.0261 33 1 4.0519 -3.2609 -0.6924 34 1 6.4226 -2.9602 -0.8793 35 1 7.7786 -4.1007 1.6296 36 1 10.4831 -3.7508 1.4038 37 1 12.0926 -2.6846 -0.4480 38 1 10.5972 -1.8270 -2.4188 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269223160.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:33 Heat of formation + Delta-G solvation = 60.625867 kcal Electronic energy + Delta-G solvation = -20294.092639 eV Core-core repulsion = 17138.707462 eV Total energy + Delta-G solvation = -3155.385177 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.03559 -40.87845 -39.75202 -35.52433 -34.81107 -34.24485 -32.00093 -30.33970 -29.87540 -28.52661 -25.40800 -24.91282 -23.21287 -21.88854 -21.27433 -21.11349 -20.52119 -18.76417 -18.61200 -17.75636 -17.11098 -16.87756 -16.16657 -15.77534 -15.54183 -15.22157 -14.91931 -14.78178 -14.69444 -14.45321 -13.63323 -13.35632 -13.30942 -13.21209 -13.00262 -12.93529 -12.71608 -12.60017 -12.30629 -11.85726 -11.63186 -11.31577 -11.26985 -10.90317 -10.80289 -9.99641 -9.90628 -8.90048 -8.61769 -7.88562 -5.20115 -0.33000 1.41482 1.43886 1.52032 1.56910 2.03472 2.34211 2.37006 2.48325 2.58726 3.34141 3.44344 3.86628 3.96247 3.99618 4.15718 4.34069 4.35906 4.43206 4.45748 4.52394 4.64524 4.69759 4.87603 4.95460 5.04841 5.08678 5.14712 5.32215 5.35097 5.36875 5.51301 5.59195 5.73885 5.94267 5.96354 6.06529 6.60308 6.63422 6.93185 7.29336 7.63176 8.63267 9.29372 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.004321 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.861988 B = 6478.180298 C = 7764.229186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.072 4.072 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.299 1.299 7 C -0.206 4.206 8 H 0.087 0.913 9 N -0.630 5.630 10 C 0.143 3.857 11 C -0.135 4.135 12 C 0.134 3.866 13 H 0.070 0.930 14 C 0.131 3.869 15 N -0.710 5.710 16 C 0.545 3.455 17 O -0.603 6.603 18 C -0.262 4.262 19 C 0.041 3.959 20 C -0.026 4.026 21 C -0.148 4.148 22 C -0.227 4.227 23 C 0.029 3.971 24 N -0.542 5.542 25 H 0.426 0.574 26 H 0.245 0.755 27 H 0.035 0.965 28 H 0.024 0.976 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.407 0.593 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.153 0.847 37 H 0.159 0.841 38 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.889 -7.963 -5.080 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.227 1.227 7 C -0.334 4.334 8 H 0.105 0.895 9 N -0.356 5.356 10 C 0.017 3.983 11 C -0.174 4.174 12 C 0.028 3.972 13 H 0.087 0.913 14 C 0.005 3.995 15 N -0.359 5.359 16 C 0.338 3.662 17 O -0.488 6.488 18 C -0.283 4.283 19 C 0.020 3.980 20 C -0.136 4.136 21 C -0.173 4.173 22 C -0.251 4.251 23 C -0.107 4.107 24 N -0.137 5.137 25 H 0.265 0.735 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.242 0.758 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.170 0.830 37 H 0.177 0.823 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 17.814 -7.959 -4.434 20.009 hybrid contribution -0.523 1.539 -0.594 1.731 sum 17.291 -6.420 -5.028 19.118 Atomic orbital electron populations 1.70019 1.06320 1.25132 1.58910 1.25536 0.96439 1.00524 1.03917 0.85144 0.78268 0.80270 0.76524 1.19033 1.21886 1.22676 1.19253 0.90566 0.82483 1.41143 0.89549 1.45988 1.03654 1.00047 1.85902 1.22042 0.87772 0.92073 0.96367 1.23489 0.95857 0.98147 0.99920 1.22561 0.92963 0.84760 0.96962 0.91278 1.21562 0.83570 0.98843 0.95481 1.45869 1.05884 1.60761 1.23393 1.17392 0.84834 0.78818 0.85187 1.90765 1.88091 1.47010 1.22954 1.21688 0.92230 1.10902 1.03521 1.20817 0.89556 0.90034 0.97560 1.18268 0.94956 1.10261 0.90084 1.21880 0.90945 1.03334 1.01178 1.21244 1.00689 1.07471 0.95650 1.22748 0.82117 1.03586 1.02256 1.42325 1.09434 1.45788 1.16137 0.73460 0.94590 0.94637 0.95833 0.88178 0.90361 0.94268 0.90462 0.75769 0.84565 0.84216 0.82958 0.82288 0.77968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.55 11.51 21.65 0.25 -57.30 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.97 45.73 29.55 68.60 2.03 47.75 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 7 C -0.21 -11.07 10.55 84.03 0.89 -10.18 16 8 H 0.09 4.41 7.51 -2.91 -0.02 4.39 16 9 N -0.63 -30.63 3.65 -713.85 -2.61 -33.23 16 10 C 0.14 6.58 7.39 83.18 0.61 7.20 16 11 C -0.14 -4.72 8.03 30.94 0.25 -4.47 16 12 C 0.13 4.96 4.10 41.80 0.17 5.13 16 13 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 14 C 0.13 4.72 5.52 86.38 0.48 5.20 16 15 N -0.71 -24.19 5.32 -472.19 -2.51 -26.70 16 16 C 0.54 18.93 7.56 85.05 0.64 19.57 16 17 O -0.60 -25.07 16.11 -4.62 -0.07 -25.14 16 18 C -0.26 -7.04 9.39 22.47 0.21 -6.83 16 19 C 0.04 1.02 9.40 22.51 0.21 1.24 16 20 C -0.03 -0.55 6.74 39.08 0.26 -0.29 16 21 C -0.15 -2.82 10.86 22.66 0.25 -2.57 16 22 C -0.23 -3.49 10.81 22.01 0.24 -3.25 16 23 C 0.03 0.38 11.90 83.45 0.99 1.38 16 24 N -0.54 -8.81 5.94 -187.33 -1.11 -9.92 16 25 H 0.43 5.33 7.87 -92.71 -0.73 4.60 16 26 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 27 H 0.04 1.88 7.13 -2.39 -0.02 1.86 16 28 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.08 2.77 8.12 -2.39 -0.02 2.75 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.41 12.86 8.34 -92.71 -0.77 12.09 16 34 H 0.14 2.89 6.93 -2.91 -0.02 2.87 16 35 H 0.14 3.66 7.46 -2.91 -0.02 3.64 16 36 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.20 1.10 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -73.58 327.70 1.22 -72.36 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -0.42 Total: 23.63 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.67 Total: 8.55 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -5.98 Total: -127.15 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.07 Total: -25.14 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -73.58 1.22 -72.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269223160.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.988 kcal (2) G-P(sol) polarization free energy of solvation -73.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds