Wall clock time and date at job start Mon Mar 30 2020 02:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00303 * 2 1 4 4 H 1.48501 * 109.47205 * 270.00404 * 3 2 1 5 5 H 1.48499 * 109.46799 * 30.00263 * 3 2 1 6 6 H 1.48498 * 109.47317 * 150.00270 * 3 2 1 7 7 C 1.38819 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00120 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99935 * 359.97438 * 7 2 1 10 10 C 1.47582 * 134.49247 * 0.02562 * 9 7 2 11 11 C 1.53953 * 86.11704 * 155.35937 * 10 9 7 12 12 C 1.47582 * 134.49145 * 180.02562 * 9 7 2 13 13 H 1.09000 * 113.87332 * 90.32896 * 12 9 7 14 14 C 1.52998 * 113.76819 * 318.93883 * 12 9 7 15 15 N 1.46503 * 109.47081 * 78.50827 * 14 12 9 16 16 C 1.34776 * 119.99925 * 179.97438 * 15 14 12 17 17 O 1.21777 * 120.00160 * 359.97438 * 16 15 14 18 18 C 1.41519 * 119.99742 * 180.02562 * 16 15 14 19 19 C 1.35619 * 119.99935 * 188.32948 * 18 16 15 20 20 C 1.41676 * 119.99685 * 32.00951 * 19 18 16 21 21 C 1.38279 * 126.25526 * 187.27097 * 20 19 18 22 22 C 1.39790 * 107.07825 * 179.74191 * 21 20 19 23 23 C 1.35502 * 107.90670 * 0.25953 * 22 21 20 24 24 N 1.35752 * 108.91270 * 0.02562 * 23 22 21 25 25 H 0.96997 * 125.69286 * 179.97438 * 24 23 22 26 26 H 0.96999 * 119.99796 * 359.97438 * 1 2 3 27 27 H 1.08995 * 113.77397 * 41.06057 * 10 9 7 28 28 H 1.09000 * 113.86881 * 269.66804 * 10 9 7 29 29 H 1.08997 * 113.73951 * 269.26088 * 11 10 9 30 30 H 1.08993 * 113.83851 * 137.96258 * 11 10 9 31 31 H 1.08997 * 109.47451 * 318.50517 * 14 12 9 32 32 H 1.09006 * 109.47275 * 198.50749 * 14 12 9 33 33 H 0.97004 * 119.99562 * 359.97438 * 15 14 12 34 34 H 1.08001 * 120.00056 * 8.32611 * 18 16 15 35 35 H 1.07995 * 119.99850 * 212.00583 * 19 18 16 36 36 H 1.08007 * 126.46004 * 359.97438 * 21 20 19 37 37 H 1.08002 * 126.04558 * 180.26406 * 22 21 20 38 38 H 1.08001 * 125.54140 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6525 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1033 -2.7573 -0.0005 11 6 0.3469 -4.0830 -0.6409 12 6 1.7201 -3.8102 -0.0005 13 1 1.8325 -4.2368 0.9962 14 6 2.9023 -4.1221 -0.9203 15 7 4.1496 -3.7190 -0.2661 16 6 5.3286 -3.9000 -0.8935 17 8 5.3572 -4.3990 -2.0039 18 6 6.5335 -3.5110 -0.2613 19 6 7.7002 -3.5346 -0.9524 20 6 7.7040 -3.2731 -2.3448 21 6 8.7851 -3.3998 -3.1977 22 6 8.3428 -3.0476 -4.4762 23 6 7.0327 -2.7136 -4.3865 24 7 6.6331 -2.8425 -3.0955 25 1 5.7409 -2.6650 -2.7589 26 1 -0.4850 0.8401 0.0004 27 1 -0.7169 -2.1391 -0.6557 28 1 -0.5289 -2.8733 0.9962 29 1 0.3590 -4.0621 -1.7306 30 1 -0.1584 -4.9607 -0.2383 31 1 2.7892 -3.5745 -1.8559 32 1 2.9296 -5.1921 -1.1267 33 1 4.1268 -3.3217 0.6186 34 1 6.5240 -3.1953 0.7715 35 1 8.6262 -3.7526 -0.4413 36 1 9.7821 -3.7154 -2.9277 37 1 8.9398 -3.0426 -5.3762 38 1 6.4081 -2.3958 -5.2083 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269223161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:36 Heat of formation + Delta-G solvation = 103.285279 kcal Electronic energy + Delta-G solvation = -21028.744381 eV Core-core repulsion = 17875.209055 eV Total energy + Delta-G solvation = -3153.535326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.15031 -39.36874 -37.97080 -34.21203 -33.57330 -32.23652 -30.76475 -28.93495 -27.96647 -27.23804 -23.72388 -23.41925 -21.85336 -20.65550 -20.23756 -19.68083 -19.08645 -17.91621 -16.71429 -16.21471 -15.48392 -15.31018 -14.58701 -14.28787 -14.07498 -13.93127 -13.73512 -13.45260 -13.28380 -12.94637 -12.62441 -12.20109 -11.97125 -11.83803 -11.47682 -11.16366 -11.06785 -10.80476 -10.58754 -10.08066 -9.85728 -9.80905 -9.67366 -9.37980 -8.85931 -8.80405 -8.56055 -7.41929 -6.94989 -5.82166 -3.14788 0.60944 2.75018 3.09853 3.32884 3.37682 3.40089 3.53550 3.62318 3.76524 4.37872 5.03883 5.09527 5.13509 5.29379 5.34066 5.43633 5.51445 5.57786 5.59640 5.68175 5.85723 6.00162 6.03593 6.08532 6.25909 6.35597 6.36974 6.40034 6.57428 6.65440 6.85083 7.04407 7.19582 7.23518 7.35847 7.53789 7.74880 7.88150 7.92828 8.52229 8.98461 9.65375 10.54064 11.34492 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.005249 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.038421 B = 5333.379002 C = 6209.445940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.125 3.875 13 H 0.049 0.951 14 C 0.123 3.877 15 N -0.709 5.709 16 C 0.538 3.462 17 O -0.565 6.565 18 C -0.281 4.281 19 C 0.039 3.961 20 C 0.008 3.992 21 C -0.152 4.152 22 C -0.221 4.221 23 C 0.021 3.979 24 N -0.505 5.505 25 H 0.422 0.578 26 H 0.253 0.747 27 H 0.073 0.927 28 H 0.026 0.974 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.403 0.597 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.100 -7.628 -2.456 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.034 3.966 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.002 4.002 15 N -0.357 5.357 16 C 0.330 3.670 17 O -0.449 6.449 18 C -0.303 4.303 19 C 0.018 3.982 20 C -0.104 4.104 21 C -0.177 4.177 22 C -0.245 4.245 23 C -0.118 4.118 24 N -0.101 5.101 25 H 0.265 0.735 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.238 0.762 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 11.891 -7.574 -3.111 14.438 hybrid contribution -0.016 1.207 0.804 1.451 sum 11.875 -6.366 -2.306 13.670 Atomic orbital electron populations 1.69815 1.04960 1.25289 1.56473 1.24760 0.95614 0.97394 1.02545 0.86213 0.78616 0.83833 0.77628 1.21628 1.21592 1.20762 1.18923 0.90093 0.81938 1.43876 0.90448 1.46073 1.02277 0.98525 1.85960 1.22195 0.87929 0.89605 0.96913 1.23768 0.96192 0.98991 1.00525 1.22507 0.92390 0.87680 0.95664 0.93334 1.21739 0.82573 0.98696 0.97174 1.46026 1.06122 1.61922 1.21620 1.17214 0.84335 0.79829 0.85599 1.90818 1.87809 1.46529 1.19702 1.21947 0.93303 1.12039 1.03008 1.20750 0.98295 0.88502 0.90671 1.18227 0.88149 1.11403 0.92653 1.21411 0.97829 1.05578 0.92921 1.20755 0.94908 1.10795 0.97999 1.22101 0.96805 1.05984 0.86911 1.42751 1.12086 1.47904 1.07327 0.73467 0.93648 0.90833 0.95569 0.90571 0.92798 0.91192 0.92211 0.76211 0.84773 0.83896 0.84429 0.84748 0.82012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 11.38 55.49 0.63 -25.98 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.22 -5.81 10.51 -15.06 -0.16 -5.97 16 8 H 0.08 1.95 7.80 -52.49 -0.41 1.54 16 9 N -0.60 -14.37 3.57 -170.72 -0.61 -14.98 16 10 C 0.16 3.59 7.51 -2.97 -0.02 3.57 16 11 C -0.16 -2.81 7.86 -25.80 -0.20 -3.01 16 12 C 0.13 2.36 4.33 -66.86 -0.29 2.07 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 14 C 0.12 2.17 5.54 -4.04 -0.02 2.15 16 15 N -0.71 -11.64 5.52 -63.25 -0.35 -11.99 16 16 C 0.54 8.82 6.32 -15.01 -0.09 8.72 16 17 O -0.56 -10.65 12.71 5.12 0.07 -10.58 16 18 C -0.28 -3.78 9.72 -39.27 -0.38 -4.16 16 19 C 0.04 0.48 9.77 -39.21 -0.38 0.10 16 20 C 0.01 0.11 5.94 -83.91 -0.50 -0.39 16 21 C -0.15 -1.96 10.86 -38.99 -0.42 -2.38 16 22 C -0.22 -2.81 10.81 -39.98 -0.43 -3.24 16 23 C 0.02 0.29 11.90 -16.79 -0.20 0.09 16 24 N -0.51 -7.81 4.50 -10.56 -0.05 -7.86 16 25 H 0.42 7.05 6.14 -40.82 -0.25 6.80 16 26 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.07 1.86 7.15 -51.93 -0.37 1.48 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 6.34 8.43 -40.82 -0.34 6.00 16 34 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 37 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 322.06 15.07 4.85 4.85 Total: -1.00 -31.74 322.06 -8.84 -40.58 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -5.16 Total: 11.94 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -3.20 Total: -2.72 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.37 Total: -60.81 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.74 -8.84 -40.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269223161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.868 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds