Wall clock time and date at job start Mon Mar 30 2020 02:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00303 * 2 1 4 4 H 1.48501 * 109.47205 * 270.00404 * 3 2 1 5 5 H 1.48499 * 109.46799 * 30.00263 * 3 2 1 6 6 H 1.48498 * 109.47317 * 150.00270 * 3 2 1 7 7 C 1.38819 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00120 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99935 * 359.97438 * 7 2 1 10 10 C 1.47582 * 134.49247 * 0.02562 * 9 7 2 11 11 C 1.53953 * 86.11704 * 155.35937 * 10 9 7 12 12 C 1.47582 * 134.49145 * 180.02562 * 9 7 2 13 13 H 1.09000 * 113.87332 * 90.32896 * 12 9 7 14 14 C 1.52998 * 113.76819 * 318.93883 * 12 9 7 15 15 N 1.46503 * 109.47081 * 78.50827 * 14 12 9 16 16 C 1.34776 * 119.99925 * 179.97438 * 15 14 12 17 17 O 1.21777 * 120.00160 * 359.97438 * 16 15 14 18 18 C 1.41519 * 119.99742 * 180.02562 * 16 15 14 19 19 C 1.35619 * 119.99935 * 188.32948 * 18 16 15 20 20 C 1.41676 * 119.99685 * 32.00951 * 19 18 16 21 21 C 1.38279 * 126.25526 * 187.27097 * 20 19 18 22 22 C 1.39790 * 107.07825 * 179.74191 * 21 20 19 23 23 C 1.35502 * 107.90670 * 0.25953 * 22 21 20 24 24 N 1.35752 * 108.91270 * 0.02562 * 23 22 21 25 25 H 0.96997 * 125.69286 * 179.97438 * 24 23 22 26 26 H 0.96999 * 119.99796 * 359.97438 * 1 2 3 27 27 H 1.08995 * 113.77397 * 41.06057 * 10 9 7 28 28 H 1.09000 * 113.86881 * 269.66804 * 10 9 7 29 29 H 1.08997 * 113.73951 * 269.26088 * 11 10 9 30 30 H 1.08993 * 113.83851 * 137.96258 * 11 10 9 31 31 H 1.08997 * 109.47451 * 318.50517 * 14 12 9 32 32 H 1.09006 * 109.47275 * 198.50749 * 14 12 9 33 33 H 0.97004 * 119.99562 * 359.97438 * 15 14 12 34 34 H 1.08001 * 120.00056 * 8.32611 * 18 16 15 35 35 H 1.07995 * 119.99850 * 212.00583 * 19 18 16 36 36 H 1.08007 * 126.46004 * 359.97438 * 21 20 19 37 37 H 1.08002 * 126.04558 * 180.26406 * 22 21 20 38 38 H 1.08001 * 125.54140 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6525 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1033 -2.7573 -0.0005 11 6 0.3469 -4.0830 -0.6409 12 6 1.7201 -3.8102 -0.0005 13 1 1.8325 -4.2368 0.9962 14 6 2.9023 -4.1221 -0.9203 15 7 4.1496 -3.7190 -0.2661 16 6 5.3286 -3.9000 -0.8935 17 8 5.3572 -4.3990 -2.0039 18 6 6.5335 -3.5110 -0.2613 19 6 7.7002 -3.5346 -0.9524 20 6 7.7040 -3.2731 -2.3448 21 6 8.7851 -3.3998 -3.1977 22 6 8.3428 -3.0476 -4.4762 23 6 7.0327 -2.7136 -4.3865 24 7 6.6331 -2.8425 -3.0955 25 1 5.7409 -2.6650 -2.7589 26 1 -0.4850 0.8401 0.0004 27 1 -0.7169 -2.1391 -0.6557 28 1 -0.5289 -2.8733 0.9962 29 1 0.3590 -4.0621 -1.7306 30 1 -0.1584 -4.9607 -0.2383 31 1 2.7892 -3.5745 -1.8559 32 1 2.9296 -5.1921 -1.1267 33 1 4.1268 -3.3217 0.6186 34 1 6.5240 -3.1953 0.7715 35 1 8.6262 -3.7526 -0.4413 36 1 9.7821 -3.7154 -2.9277 37 1 8.9398 -3.0426 -5.3762 38 1 6.4081 -2.3958 -5.2083 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269223161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:36 Heat of formation + Delta-G solvation = 82.671760 kcal Electronic energy + Delta-G solvation = -21029.638251 eV Core-core repulsion = 17875.209055 eV Total energy + Delta-G solvation = -3154.429195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.20014 -40.64527 -39.57084 -35.56034 -34.63791 -34.21407 -31.78814 -30.23772 -29.80813 -28.49666 -25.31092 -24.96320 -23.26917 -21.81112 -21.22266 -21.05749 -20.52118 -19.18927 -18.38548 -17.47268 -17.10304 -16.71954 -16.14299 -15.66858 -15.50254 -15.06673 -14.99040 -14.90160 -14.60944 -14.15038 -13.76443 -13.57945 -13.28095 -13.11831 -12.96839 -12.84481 -12.71815 -12.63092 -12.30357 -11.86030 -11.55254 -11.38731 -10.96762 -10.85440 -10.66681 -10.04108 -9.71308 -8.90188 -8.44570 -7.88596 -5.20090 -0.40258 1.41605 1.42259 1.49991 1.69336 2.04781 2.38209 2.47517 2.49022 2.63574 3.32430 3.38177 3.94615 4.06064 4.15089 4.18584 4.32588 4.33842 4.49003 4.54035 4.62419 4.68119 4.70477 4.85220 5.03481 5.05250 5.09019 5.13653 5.32076 5.39390 5.41886 5.49855 5.60180 5.72668 5.96395 6.08429 6.24337 6.63214 6.63918 6.93904 7.28575 7.63920 8.58897 9.28345 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.005249 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.038421 B = 5333.379002 C = 6209.445940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.965 3.035 4 H -0.294 1.294 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.212 4.212 8 H 0.085 0.915 9 N -0.628 5.628 10 C 0.150 3.850 11 C -0.131 4.131 12 C 0.132 3.868 13 H 0.069 0.931 14 C 0.135 3.865 15 N -0.710 5.710 16 C 0.536 3.464 17 O -0.595 6.595 18 C -0.304 4.304 19 C 0.055 3.945 20 C -0.026 4.026 21 C -0.148 4.148 22 C -0.226 4.226 23 C 0.003 3.997 24 N -0.523 5.523 25 H 0.411 0.589 26 H 0.245 0.755 27 H 0.038 0.962 28 H 0.022 0.978 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.407 0.593 34 H 0.157 0.843 35 H 0.185 0.815 36 H 0.168 0.832 37 H 0.159 0.841 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.586 -8.832 -2.179 17.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.794 3.206 4 H -0.221 1.221 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.340 4.340 8 H 0.103 0.897 9 N -0.354 5.354 10 C 0.024 3.976 11 C -0.170 4.170 12 C 0.026 3.974 13 H 0.086 0.914 14 C 0.010 3.990 15 N -0.359 5.359 16 C 0.330 3.670 17 O -0.481 6.481 18 C -0.326 4.326 19 C 0.035 3.965 20 C -0.136 4.136 21 C -0.173 4.173 22 C -0.249 4.249 23 C -0.136 4.136 24 N -0.118 5.118 25 H 0.252 0.748 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.242 0.758 34 H 0.175 0.825 35 H 0.202 0.798 36 H 0.185 0.815 37 H 0.176 0.824 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 14.422 -8.815 -2.820 17.136 hybrid contribution -0.710 1.499 0.624 1.772 sum 13.712 -7.315 -2.196 15.696 Atomic orbital electron populations 1.69997 1.06267 1.25149 1.58963 1.25493 0.96378 1.00419 1.03985 0.85276 0.77930 0.80242 0.77128 1.22126 1.22383 1.19200 1.19289 0.90657 0.83025 1.41053 0.89725 1.46407 1.03174 0.99922 1.85897 1.22163 0.87190 0.91785 0.96432 1.23563 0.95229 0.97811 1.00387 1.22663 0.93355 0.84652 0.96750 0.91363 1.21460 0.82879 0.99044 0.95616 1.45982 1.05854 1.62298 1.21753 1.17665 0.84968 0.79253 0.85118 1.90798 1.88206 1.48062 1.21022 1.21998 0.92219 1.14191 1.04155 1.21278 0.99637 0.85687 0.89927 1.18822 0.88392 1.12492 0.93936 1.21882 0.98699 1.04112 0.92607 1.21154 0.94711 1.10006 0.99069 1.22616 0.97829 1.06141 0.86966 1.42897 1.11951 1.48787 1.08164 0.74750 0.94604 0.94319 0.96045 0.90462 0.88900 0.94019 0.90739 0.75792 0.82501 0.79813 0.81460 0.82383 0.80484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.03 11.38 21.65 0.25 -56.78 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.96 45.43 29.55 68.60 2.03 47.46 16 4 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.21 -11.18 10.51 84.04 0.88 -10.29 16 8 H 0.09 4.24 7.80 -2.91 -0.02 4.21 16 9 N -0.63 -29.93 3.57 -694.03 -2.48 -32.41 16 10 C 0.15 6.84 7.51 86.48 0.65 7.49 16 11 C -0.13 -4.51 7.86 31.26 0.25 -4.27 16 12 C 0.13 4.77 4.33 45.09 0.20 4.97 16 13 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 14 C 0.14 4.64 5.54 86.38 0.48 5.11 16 15 N -0.71 -22.60 5.52 -472.21 -2.61 -25.20 16 16 C 0.54 17.06 6.32 85.05 0.54 17.60 16 17 O -0.59 -22.24 12.71 -4.59 -0.06 -22.30 16 18 C -0.30 -7.58 9.72 22.47 0.22 -7.36 16 19 C 0.05 1.22 9.77 22.51 0.22 1.44 16 20 C -0.03 -0.69 5.94 39.08 0.23 -0.46 16 21 C -0.15 -3.40 10.86 22.66 0.25 -3.15 16 22 C -0.23 -5.26 10.81 22.01 0.24 -5.02 16 23 C 0.00 0.07 11.90 83.45 0.99 1.06 16 24 N -0.52 -15.92 4.50 -187.33 -0.84 -16.76 16 25 H 0.41 13.92 6.14 -92.71 -0.57 13.35 16 26 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.04 2.02 7.15 -2.39 -0.02 2.00 16 28 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 2.65 8.10 -2.39 -0.02 2.63 16 30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.41 12.24 8.43 -92.71 -0.78 11.46 16 34 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 37 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 38 H 0.18 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -69.99 322.06 1.62 -68.38 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.27 Total: 33.93 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 5.60 Total: 3.67 kcal Atomic # 7 Polarization: -125.46 SS G_CDS: -5.68 Total: -131.15 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.06 Total: -22.30 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.99 1.62 -68.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269223161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.050 kcal (2) G-P(sol) polarization free energy of solvation -69.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds