Wall clock time and date at job start Mon Mar 30 2020 02:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48494 * 109.47197 * 95.01032 * 3 2 1 5 5 H 1.48497 * 109.46819 * 215.01006 * 3 2 1 6 6 H 1.48498 * 109.47048 * 335.00815 * 3 2 1 7 7 C 1.38802 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00246 * 174.92327 * 7 2 1 9 9 N 1.36938 * 120.00063 * 354.92493 * 7 2 1 10 10 C 1.47060 * 136.05760 * 6.04677 * 9 7 2 11 11 C 1.53757 * 87.88857 * 152.96521 * 10 9 7 12 12 C 1.47067 * 136.05706 * 186.42095 * 9 7 2 13 13 H 1.09003 * 113.47306 * 92.30329 * 12 9 7 14 14 C 1.52999 * 113.46817 * 321.86166 * 12 9 7 15 15 N 1.46498 * 109.47409 * 74.50760 * 14 12 9 16 16 C 1.34779 * 120.00418 * 180.02562 * 15 14 12 17 17 O 1.21776 * 119.99656 * 359.97438 * 16 15 14 18 18 C 1.41515 * 119.99706 * 180.02562 * 16 15 14 19 19 C 1.35619 * 119.99657 * 180.02562 * 18 16 15 20 20 C 1.41669 * 119.99936 * 179.97438 * 19 18 16 21 21 C 1.38286 * 126.25863 * 179.97438 * 20 19 18 22 22 C 1.39785 * 107.08011 * 179.97438 * 21 20 19 23 23 C 1.35501 * 107.90940 * 359.97438 * 22 21 20 24 24 N 1.35762 * 108.91005 * 359.77072 * 23 22 21 25 25 H 0.96995 * 125.69002 * 180.22339 * 24 23 22 26 26 H 0.97005 * 119.99968 * 0.02562 * 1 2 3 27 27 H 1.09003 * 113.47161 * 267.69692 * 10 9 7 28 28 H 1.09003 * 113.47055 * 38.13660 * 10 9 7 29 29 H 1.09004 * 114.39720 * 272.67401 * 11 10 9 30 30 H 1.09008 * 114.26541 * 139.79526 * 11 10 9 31 31 H 1.08999 * 109.47457 * 194.50702 * 14 12 9 32 32 H 1.09008 * 109.47380 * 314.50825 * 14 12 9 33 33 H 0.97002 * 119.99534 * 359.97438 * 15 14 12 34 34 H 1.08000 * 120.00663 * 359.97438 * 18 16 15 35 35 H 1.08000 * 119.99680 * 359.97438 * 19 18 16 36 36 H 1.08006 * 126.46176 * 359.97438 * 21 20 19 37 37 H 1.07998 * 126.04569 * 179.97438 * 22 21 20 38 38 H 1.08001 * 125.55138 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6036 1.9853 1.3947 5 1 3.4908 1.4731 -0.8033 6 1 1.3987 2.6809 -0.5915 7 6 2.0102 -1.2021 -0.0005 8 1 3.0870 -1.2039 -0.0833 9 7 1.3296 -2.3857 0.1038 10 6 -0.0821 -2.7973 0.1226 11 6 0.3656 -4.1560 -0.4410 12 6 1.6886 -3.8041 0.2532 13 1 1.7351 -4.1332 1.2913 14 6 2.9253 -4.2076 -0.5522 15 7 4.1268 -3.6853 0.1034 16 6 5.3418 -3.9182 -0.4316 17 8 5.4407 -4.5633 -1.4597 18 6 6.5023 -3.4140 0.2020 19 6 7.7248 -3.6480 -0.3366 20 6 8.8866 -3.1428 0.2974 21 6 10.1900 -3.3033 -0.1358 22 6 11.0122 -2.6458 0.7838 23 6 10.2189 -2.1065 1.7409 24 7 8.9241 -2.3967 1.4540 25 1 8.1540 -2.1259 1.9779 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5025 -2.8610 1.1263 28 1 -0.7097 -2.2271 -0.5624 29 1 0.4277 -4.1940 -1.5286 30 1 -0.1518 -5.0127 -0.0089 31 1 2.9847 -5.2946 -0.6067 32 1 2.8532 -3.7967 -1.5593 33 1 4.0479 -3.1711 0.9221 34 1 6.4146 -2.8422 1.1140 35 1 7.8125 -4.2194 -1.2489 36 1 10.5121 -3.8361 -1.0183 37 1 12.0892 -2.5794 0.7395 38 1 10.5607 -1.5356 2.5916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269223162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:40 Heat of formation + Delta-G solvation = 83.054632 kcal Electronic energy + Delta-G solvation = -20289.673813 eV Core-core repulsion = 17135.261220 eV Total energy + Delta-G solvation = -3154.412593 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.27342 -39.48652 -38.10421 -34.13552 -33.70913 -32.24778 -31.25787 -29.14107 -28.01146 -27.26888 -23.76096 -23.48817 -21.78235 -20.93554 -20.42972 -19.70626 -19.09381 -17.78181 -17.03907 -16.33697 -15.57134 -15.30194 -14.62962 -14.38767 -14.25862 -14.04122 -13.91355 -13.67681 -13.24904 -12.94218 -12.56850 -12.31447 -12.05729 -11.90925 -11.57538 -11.10701 -11.00252 -10.81509 -10.59041 -10.33012 -10.03694 -9.87465 -9.68221 -9.20542 -9.17865 -8.85115 -8.54145 -7.77104 -6.91816 -5.81764 -3.13392 0.65938 2.38581 2.90178 3.03139 3.33659 3.39269 3.41405 3.69488 3.79047 4.40336 4.84164 4.91412 4.99294 5.14569 5.18211 5.27868 5.36579 5.50473 5.55701 5.73440 5.77634 5.91208 5.93304 6.11117 6.16850 6.24582 6.35242 6.40570 6.58811 6.71866 6.72882 6.82747 6.94164 7.21349 7.26836 7.36316 7.55189 7.93578 7.96650 8.62535 8.99350 9.66412 10.60610 11.35972 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.004342 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.403104 B = 6447.144747 C = 7775.719958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.216 4.216 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.162 4.162 12 C 0.126 3.874 13 H 0.047 0.953 14 C 0.122 3.878 15 N -0.710 5.710 16 C 0.546 3.454 17 O -0.562 6.562 18 C -0.232 4.232 19 C 0.015 3.985 20 C 0.011 3.989 21 C -0.148 4.148 22 C -0.209 4.209 23 C 0.010 3.990 24 N -0.544 5.544 25 H 0.418 0.582 26 H 0.254 0.746 27 H 0.026 0.974 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.402 0.598 34 H 0.114 0.886 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.333 -6.908 4.392 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.216 1.216 7 C -0.343 4.343 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.028 3.972 11 C -0.201 4.201 12 C 0.018 3.982 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.359 5.359 16 C 0.337 3.663 17 O -0.444 6.444 18 C -0.254 4.254 19 C -0.006 4.006 20 C -0.099 4.099 21 C -0.174 4.174 22 C -0.233 4.233 23 C -0.125 4.125 24 N -0.138 5.138 25 H 0.256 0.744 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.237 0.763 34 H 0.132 0.868 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 15.249 -6.930 3.721 17.158 hybrid contribution 0.037 1.533 0.948 1.803 sum 15.286 -5.397 4.668 16.870 Atomic orbital electron populations 1.69842 1.05011 1.25381 1.56027 1.24806 0.95630 0.97409 1.02433 0.86231 0.78823 0.83769 0.77569 1.21628 1.20700 1.21572 1.18845 0.90557 0.81453 1.43452 0.90174 1.45677 1.02587 0.99964 1.84504 1.22027 0.88611 0.89125 0.97387 1.23719 0.97059 0.98885 1.00417 1.22417 0.92030 0.87585 0.96123 0.93543 1.21776 0.83512 0.97332 0.97689 1.45909 1.06047 1.55162 1.28763 1.16898 0.83989 0.80671 0.84790 1.90792 1.87396 1.41757 1.24493 1.21846 0.93531 1.07059 1.02983 1.20805 0.89248 0.93085 0.97433 1.18342 0.95260 1.04735 0.91599 1.21508 0.90908 1.03816 1.01118 1.20868 0.99474 1.05633 0.97321 1.22049 0.82863 1.05278 1.02316 1.42236 1.08482 1.41750 1.21355 0.74428 0.93627 0.95619 0.91319 0.90193 0.92357 0.92284 0.91151 0.76341 0.86846 0.83264 0.83857 0.84301 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 11.61 55.49 0.64 -26.19 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 21.84 29.56 -169.99 -5.02 16.81 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.22 -5.78 10.54 -15.06 -0.16 -5.94 16 8 H 0.08 2.07 7.61 -52.49 -0.40 1.67 16 9 N -0.60 -14.65 3.65 -176.86 -0.64 -15.30 16 10 C 0.15 3.53 7.33 -8.38 -0.06 3.47 16 11 C -0.16 -2.95 8.04 -26.08 -0.21 -3.16 16 12 C 0.13 2.44 4.10 -72.40 -0.30 2.14 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 14 C 0.12 2.25 5.52 -4.04 -0.02 2.22 16 15 N -0.71 -12.33 5.32 -63.25 -0.34 -12.67 16 16 C 0.55 9.52 7.56 -15.01 -0.11 9.40 16 17 O -0.56 -11.52 16.11 5.12 0.08 -11.43 16 18 C -0.23 -3.20 9.39 -39.27 -0.37 -3.57 16 19 C 0.01 0.19 9.40 -39.21 -0.37 -0.18 16 20 C 0.01 0.13 6.74 -83.91 -0.57 -0.44 16 21 C -0.15 -1.57 10.86 -38.99 -0.42 -1.99 16 22 C -0.21 -1.94 10.81 -39.98 -0.43 -2.37 16 23 C 0.01 0.08 11.90 -16.79 -0.20 -0.11 16 24 N -0.54 -5.17 5.94 -10.56 -0.06 -5.23 16 25 H 0.42 3.18 7.87 -40.82 -0.32 2.86 16 26 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.75 7.30 -51.93 -0.38 1.37 16 29 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 30 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 33 H 0.40 6.59 8.43 -40.82 -0.34 6.25 16 34 H 0.11 1.28 6.93 -52.49 -0.36 0.92 16 35 H 0.15 1.93 7.46 -52.49 -0.39 1.54 16 36 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 328.11 15.07 4.94 4.94 Total: -1.00 -33.27 328.11 -8.85 -42.12 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.14 Total: 7.72 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -3.32 Total: -0.78 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.40 Total: -59.39 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.27 -8.85 -42.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269223162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.179 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds