Wall clock time and date at job start Mon Mar 30 2020 02:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48494 * 109.47197 * 95.01032 * 3 2 1 5 5 H 1.48497 * 109.46819 * 215.01006 * 3 2 1 6 6 H 1.48498 * 109.47048 * 335.00815 * 3 2 1 7 7 C 1.38802 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00246 * 174.92327 * 7 2 1 9 9 N 1.36938 * 120.00063 * 354.92493 * 7 2 1 10 10 C 1.47060 * 136.05760 * 6.04677 * 9 7 2 11 11 C 1.53757 * 87.88857 * 152.96521 * 10 9 7 12 12 C 1.47067 * 136.05706 * 186.42095 * 9 7 2 13 13 H 1.09003 * 113.47306 * 92.30329 * 12 9 7 14 14 C 1.52999 * 113.46817 * 321.86166 * 12 9 7 15 15 N 1.46498 * 109.47409 * 74.50760 * 14 12 9 16 16 C 1.34779 * 120.00418 * 180.02562 * 15 14 12 17 17 O 1.21776 * 119.99656 * 359.97438 * 16 15 14 18 18 C 1.41515 * 119.99706 * 180.02562 * 16 15 14 19 19 C 1.35619 * 119.99657 * 180.02562 * 18 16 15 20 20 C 1.41669 * 119.99936 * 179.97438 * 19 18 16 21 21 C 1.38286 * 126.25863 * 179.97438 * 20 19 18 22 22 C 1.39785 * 107.08011 * 179.97438 * 21 20 19 23 23 C 1.35501 * 107.90940 * 359.97438 * 22 21 20 24 24 N 1.35762 * 108.91005 * 359.77072 * 23 22 21 25 25 H 0.96995 * 125.69002 * 180.22339 * 24 23 22 26 26 H 0.97005 * 119.99968 * 0.02562 * 1 2 3 27 27 H 1.09003 * 113.47161 * 267.69692 * 10 9 7 28 28 H 1.09003 * 113.47055 * 38.13660 * 10 9 7 29 29 H 1.09004 * 114.39720 * 272.67401 * 11 10 9 30 30 H 1.09008 * 114.26541 * 139.79526 * 11 10 9 31 31 H 1.08999 * 109.47457 * 194.50702 * 14 12 9 32 32 H 1.09008 * 109.47380 * 314.50825 * 14 12 9 33 33 H 0.97002 * 119.99534 * 359.97438 * 15 14 12 34 34 H 1.08000 * 120.00663 * 359.97438 * 18 16 15 35 35 H 1.08000 * 119.99680 * 359.97438 * 19 18 16 36 36 H 1.08006 * 126.46176 * 359.97438 * 21 20 19 37 37 H 1.07998 * 126.04569 * 179.97438 * 22 21 20 38 38 H 1.08001 * 125.55138 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6036 1.9853 1.3947 5 1 3.4908 1.4731 -0.8033 6 1 1.3987 2.6809 -0.5915 7 6 2.0102 -1.2021 -0.0005 8 1 3.0870 -1.2039 -0.0833 9 7 1.3296 -2.3857 0.1038 10 6 -0.0821 -2.7973 0.1226 11 6 0.3656 -4.1560 -0.4410 12 6 1.6886 -3.8041 0.2532 13 1 1.7351 -4.1332 1.2913 14 6 2.9253 -4.2076 -0.5522 15 7 4.1268 -3.6853 0.1034 16 6 5.3418 -3.9182 -0.4316 17 8 5.4407 -4.5633 -1.4597 18 6 6.5023 -3.4140 0.2020 19 6 7.7248 -3.6480 -0.3366 20 6 8.8866 -3.1428 0.2974 21 6 10.1900 -3.3033 -0.1358 22 6 11.0122 -2.6458 0.7838 23 6 10.2189 -2.1065 1.7409 24 7 8.9241 -2.3967 1.4540 25 1 8.1540 -2.1259 1.9779 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5025 -2.8610 1.1263 28 1 -0.7097 -2.2271 -0.5624 29 1 0.4277 -4.1940 -1.5286 30 1 -0.1518 -5.0127 -0.0089 31 1 2.9847 -5.2946 -0.6067 32 1 2.8532 -3.7967 -1.5593 33 1 4.0479 -3.1711 0.9221 34 1 6.4146 -2.8422 1.1140 35 1 7.8125 -4.2194 -1.2489 36 1 10.5121 -3.8361 -1.0183 37 1 12.0892 -2.5794 0.7395 38 1 10.5607 -1.5356 2.5916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269223162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:39 Heat of formation + Delta-G solvation = 60.527099 kcal Electronic energy + Delta-G solvation = -20290.650680 eV Core-core repulsion = 17135.261220 eV Total energy + Delta-G solvation = -3155.389460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.03535 -40.87779 -39.74362 -35.52277 -34.81086 -34.25193 -32.00058 -30.34100 -29.86750 -28.52429 -25.40073 -24.91257 -23.21326 -21.88669 -21.27579 -21.12080 -20.52061 -18.75571 -18.60470 -17.74850 -17.12150 -16.87904 -16.16850 -15.77701 -15.54135 -15.22019 -14.92094 -14.78002 -14.69058 -14.45106 -13.63780 -13.37751 -13.30890 -13.21170 -12.95347 -12.93246 -12.69701 -12.60540 -12.34068 -11.87406 -11.66171 -11.31486 -11.26296 -10.86116 -10.82529 -9.99659 -9.90632 -8.89113 -8.61729 -7.89923 -5.20851 -0.32972 1.42130 1.44077 1.51514 1.56923 2.03508 2.34276 2.37326 2.48548 2.58666 3.31644 3.45811 3.86580 3.95867 3.99663 4.15784 4.34021 4.35932 4.43212 4.45782 4.52410 4.64798 4.69635 4.87420 4.95483 5.04808 5.08798 5.14724 5.32738 5.35157 5.36881 5.51648 5.58407 5.72895 5.94291 5.95519 6.06571 6.60322 6.63534 6.92638 7.29325 7.62779 8.63661 9.28356 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.004342 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.403104 B = 6447.144747 C = 7775.719958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.299 1.299 7 C -0.210 4.210 8 H 0.086 0.914 9 N -0.629 5.629 10 C 0.146 3.854 11 C -0.135 4.135 12 C 0.133 3.867 13 H 0.069 0.931 14 C 0.131 3.869 15 N -0.711 5.711 16 C 0.545 3.455 17 O -0.603 6.603 18 C -0.262 4.262 19 C 0.041 3.959 20 C -0.026 4.026 21 C -0.148 4.148 22 C -0.227 4.227 23 C 0.029 3.971 24 N -0.542 5.542 25 H 0.426 0.574 26 H 0.246 0.754 27 H 0.024 0.976 28 H 0.032 0.968 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.407 0.593 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.153 0.847 37 H 0.159 0.841 38 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.754 -7.265 5.783 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.797 3.203 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.226 1.226 7 C -0.338 4.338 8 H 0.103 0.897 9 N -0.355 5.355 10 C 0.020 3.980 11 C -0.174 4.174 12 C 0.027 3.973 13 H 0.086 0.914 14 C 0.006 3.994 15 N -0.359 5.359 16 C 0.338 3.662 17 O -0.488 6.488 18 C -0.283 4.283 19 C 0.020 3.980 20 C -0.136 4.136 21 C -0.173 4.173 22 C -0.250 4.250 23 C -0.107 4.107 24 N -0.137 5.137 25 H 0.265 0.735 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.243 0.757 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.170 0.830 37 H 0.177 0.823 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 17.676 -7.316 5.134 19.807 hybrid contribution -0.511 1.587 0.529 1.749 sum 17.164 -5.730 5.664 18.961 Atomic orbital electron populations 1.70024 1.06373 1.25336 1.58446 1.25566 0.96421 1.00560 1.03671 0.85244 0.77509 0.79836 0.77706 1.20786 1.20040 1.22570 1.19188 0.90996 0.82577 1.41067 0.89663 1.45990 1.03618 1.01297 1.84642 1.22041 0.87714 0.91446 0.96763 1.23545 0.95878 0.97596 1.00392 1.22552 0.92914 0.84573 0.97282 0.91417 1.21560 0.83793 0.98175 0.95919 1.45877 1.05837 1.55333 1.28885 1.17390 0.84723 0.79874 0.84242 1.90761 1.87891 1.43832 1.26336 1.21691 0.92281 1.09732 1.04643 1.20817 0.89626 0.91080 0.96440 1.18270 0.94970 1.07093 0.93230 1.21879 0.90970 1.03023 1.01465 1.21242 1.00694 1.05814 0.97296 1.22747 0.82124 1.03393 1.02449 1.42328 1.09400 1.41173 1.20789 0.73459 0.94517 0.95865 0.94923 0.90268 0.88189 0.90458 0.94250 0.75748 0.84554 0.84216 0.82954 0.82288 0.77980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.37 11.61 21.65 0.25 -57.12 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 3 Si 0.97 45.47 29.56 68.60 2.03 47.49 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 7 C -0.21 -11.29 10.54 84.03 0.89 -10.41 16 8 H 0.09 4.38 7.61 -2.91 -0.02 4.36 16 9 N -0.63 -30.65 3.65 -713.45 -2.60 -33.25 16 10 C 0.15 6.72 7.33 83.26 0.61 7.33 16 11 C -0.14 -4.71 8.04 31.02 0.25 -4.46 16 12 C 0.13 4.95 4.10 41.78 0.17 5.12 16 13 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 14 C 0.13 4.72 5.52 86.38 0.48 5.20 16 15 N -0.71 -24.24 5.32 -472.21 -2.51 -26.75 16 16 C 0.54 18.94 7.56 85.05 0.64 19.58 16 17 O -0.60 -25.05 16.11 -4.59 -0.07 -25.13 16 18 C -0.26 -7.04 9.39 22.47 0.21 -6.83 16 19 C 0.04 1.03 9.40 22.51 0.21 1.24 16 20 C -0.03 -0.55 6.74 39.08 0.26 -0.29 16 21 C -0.15 -2.82 10.86 22.66 0.25 -2.57 16 22 C -0.23 -3.50 10.81 22.01 0.24 -3.26 16 23 C 0.03 0.38 11.90 83.45 0.99 1.38 16 24 N -0.54 -8.83 5.94 -187.33 -1.11 -9.94 16 25 H 0.43 5.35 7.87 -92.71 -0.73 4.62 16 26 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 27 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.03 1.72 7.30 -2.39 -0.02 1.70 16 29 H 0.08 2.78 8.12 -2.38 -0.02 2.76 16 30 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 31 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.41 12.94 8.43 -92.71 -0.78 12.16 16 34 H 0.14 2.90 6.93 -2.91 -0.02 2.88 16 35 H 0.14 3.66 7.46 -2.91 -0.02 3.64 16 36 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.20 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -73.41 328.11 1.22 -72.20 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -0.43 Total: 23.91 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.67 Total: 8.59 kcal Atomic # 7 Polarization: -121.09 SS G_CDS: -5.97 Total: -127.07 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.07 Total: -25.13 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -73.41 1.22 -72.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269223162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.725 kcal (2) G-P(sol) polarization free energy of solvation -73.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds