Wall clock time and date at job start Mon Mar 30 2020 02:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00439 * 2 1 4 4 H 1.48497 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46907 * 300.00311 * 3 2 1 6 6 H 1.48501 * 109.46899 * 59.99683 * 3 2 1 7 7 C 1.38812 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00058 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.47066 * 136.05616 * 359.94937 * 9 7 2 11 11 C 1.53497 * 87.98416 * 207.15504 * 10 9 7 12 12 C 1.47057 * 136.05489 * 179.97438 * 9 7 2 13 13 H 1.09004 * 113.47215 * 267.68407 * 12 9 7 14 14 C 1.52996 * 113.47187 * 38.06832 * 12 9 7 15 15 N 1.46501 * 109.47161 * 285.49264 * 14 12 9 16 16 C 1.34778 * 120.00320 * 179.97438 * 15 14 12 17 17 O 1.21782 * 119.99686 * 0.02562 * 16 15 14 18 18 C 1.41515 * 120.00029 * 180.02562 * 16 15 14 19 19 C 1.35617 * 119.99961 * 188.36159 * 18 16 15 20 20 C 1.41678 * 120.00020 * 32.14699 * 19 18 16 21 21 C 1.38281 * 126.25960 * 187.22939 * 20 19 18 22 22 C 1.39785 * 107.07919 * 180.02562 * 21 20 19 23 23 C 1.35496 * 107.90976 * 0.02562 * 22 21 20 24 24 N 1.35755 * 108.91297 * 359.97438 * 23 22 21 25 25 H 0.96998 * 125.69566 * 179.73330 * 24 23 22 26 26 H 0.96999 * 119.99494 * 359.97438 * 1 2 3 27 27 H 1.08996 * 113.46773 * 321.93494 * 10 9 7 28 28 H 1.09005 * 113.46626 * 92.37207 * 10 9 7 29 29 H 1.08997 * 114.20458 * 220.34956 * 11 10 9 30 30 H 1.08994 * 114.20830 * 87.51969 * 11 10 9 31 31 H 1.09004 * 109.47530 * 165.49069 * 14 12 9 32 32 H 1.09001 * 109.47423 * 45.49259 * 14 12 9 33 33 H 0.97001 * 119.99697 * 0.02562 * 15 14 12 34 34 H 1.07991 * 120.00232 * 8.36114 * 18 16 15 35 35 H 1.08000 * 120.00119 * 212.16055 * 19 18 16 36 36 H 1.08004 * 126.46032 * 0.06776 * 21 20 19 37 37 H 1.07999 * 126.04848 * 180.02562 * 22 21 20 38 38 H 1.08005 * 125.54754 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 -0.0879 -2.7948 0.0033 11 6 0.3423 -4.0915 0.7032 12 6 1.6798 -3.8154 0.0020 13 1 1.7444 -4.2469 -0.9969 14 6 2.8996 -4.1402 0.8665 15 7 4.1154 -3.6902 0.1843 16 6 5.3193 -3.8724 0.7623 17 8 5.3963 -4.4114 1.8516 18 6 6.4937 -3.4372 0.1035 19 6 7.7117 -3.7685 0.5994 20 6 7.8901 -5.0009 1.2751 21 6 9.0272 -5.4069 1.9492 22 6 8.7677 -6.6813 2.4615 23 6 7.5080 -7.0267 2.1013 24 7 6.9633 -6.0138 1.3799 25 1 6.0716 -6.0066 0.9982 26 1 -0.4849 0.8401 0.0004 27 1 -0.7220 -2.1583 0.6203 28 1 -0.4947 -2.9549 -0.9952 29 1 -0.1730 -4.9836 0.3473 30 1 0.3842 -4.0200 1.7900 31 1 2.9523 -5.2165 1.0308 32 1 2.8113 -3.6302 1.8257 33 1 4.0540 -3.2606 -0.6832 34 1 6.4200 -2.8413 -0.7941 35 1 8.5456 -3.0928 0.4794 36 1 9.9428 -4.8449 2.0598 37 1 9.4506 -7.2842 3.0417 38 1 7.0170 -7.9565 2.3480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269223163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:43 Heat of formation + Delta-G solvation = 107.415022 kcal Electronic energy + Delta-G solvation = -20866.867706 eV Core-core repulsion = 17713.511459 eV Total energy + Delta-G solvation = -3153.356247 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21609 -39.41081 -38.14761 -34.21322 -33.59200 -32.25411 -30.85452 -28.95401 -28.01942 -27.23299 -23.69872 -23.51394 -21.75740 -20.69765 -20.30675 -19.71331 -19.21236 -17.94245 -16.69507 -16.26381 -15.56090 -15.24252 -14.55888 -14.30017 -14.10478 -14.03823 -13.75366 -13.39799 -13.31167 -12.91894 -12.72495 -12.26950 -11.93699 -11.90718 -11.58153 -11.16292 -11.03042 -10.81425 -10.59247 -10.04470 -9.87076 -9.84995 -9.67277 -9.27195 -8.86056 -8.84170 -8.57174 -7.47243 -6.94539 -5.81210 -3.14090 0.58292 2.67320 3.05733 3.35215 3.40648 3.43217 3.44960 3.53012 3.82321 4.39746 5.05762 5.07039 5.15202 5.20043 5.34911 5.37949 5.47441 5.52388 5.58977 5.67929 5.86404 5.95351 6.00575 6.06415 6.26613 6.31835 6.34367 6.37108 6.54538 6.67108 6.84806 6.97689 7.15221 7.18223 7.34293 7.53566 7.65493 7.88665 7.93190 8.52382 8.98601 9.65952 10.58042 11.35994 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.004463 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.107811 B = 6271.775792 C = 7280.561261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.215 4.215 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.121 3.879 15 N -0.707 5.707 16 C 0.538 3.462 17 O -0.564 6.564 18 C -0.276 4.276 19 C 0.034 3.966 20 C 0.012 3.988 21 C -0.152 4.152 22 C -0.219 4.219 23 C 0.016 3.984 24 N -0.507 5.507 25 H 0.419 0.581 26 H 0.253 0.747 27 H 0.072 0.928 28 H 0.025 0.975 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.404 0.596 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.552 -12.372 -0.315 17.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.342 4.342 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.004 4.004 15 N -0.356 5.356 16 C 0.330 3.670 17 O -0.448 6.448 18 C -0.298 4.298 19 C 0.014 3.986 20 C -0.100 4.100 21 C -0.178 4.178 22 C -0.243 4.243 23 C -0.122 4.122 24 N -0.103 5.103 25 H 0.262 0.738 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.239 0.761 34 H 0.152 0.848 35 H 0.162 0.838 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 12.398 -12.333 0.345 17.490 hybrid contribution -0.094 1.348 -0.668 1.507 sum 12.303 -10.985 -0.324 16.497 Atomic orbital electron populations 1.69841 1.04997 1.25215 1.56413 1.24784 0.95655 0.97485 1.02461 0.86091 0.78753 0.83887 0.77309 1.20470 1.21734 1.21670 1.18904 0.90043 0.81331 1.43946 0.90129 1.45676 1.02596 0.98543 1.85877 1.22029 0.88727 0.90194 0.96489 1.23665 0.96932 0.99064 1.00363 1.22418 0.92050 0.87877 0.95785 0.93523 1.21789 0.83425 0.97872 0.97320 1.46036 1.06215 1.60367 1.22943 1.17196 0.84330 0.79338 0.86118 1.90819 1.87646 1.45084 1.21257 1.21984 0.92840 1.11480 1.03460 1.20768 0.97516 0.90877 0.89479 1.18249 0.90753 0.91652 1.09344 1.21431 0.97857 0.97061 1.01405 1.20760 0.96879 0.98249 1.08418 1.22051 0.95684 0.94692 0.99795 1.42681 1.14615 1.13137 1.39841 0.73816 0.93707 0.90972 0.95728 0.92364 0.90229 0.92545 0.91084 0.76138 0.84807 0.83774 0.84378 0.84745 0.82076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 11.51 55.49 0.64 -26.25 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.22 -5.74 10.55 -15.05 -0.16 -5.90 16 8 H 0.08 2.08 7.50 -52.49 -0.39 1.68 16 9 N -0.60 -14.52 3.65 -176.99 -0.65 -15.17 16 10 C 0.15 3.44 7.39 -8.51 -0.06 3.38 16 11 C -0.16 -2.90 8.03 -26.20 -0.21 -3.11 16 12 C 0.13 2.39 4.10 -72.39 -0.30 2.09 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 14 C 0.12 2.13 5.52 -4.04 -0.02 2.11 16 15 N -0.71 -11.73 5.32 -63.25 -0.34 -12.07 16 16 C 0.54 8.88 6.32 -15.01 -0.09 8.78 16 17 O -0.56 -10.67 12.72 5.12 0.07 -10.61 16 18 C -0.28 -3.74 9.72 -39.27 -0.38 -4.12 16 19 C 0.03 0.42 9.77 -39.21 -0.38 0.04 16 20 C 0.01 0.16 5.95 -83.90 -0.50 -0.34 16 21 C -0.15 -1.86 10.86 -38.99 -0.42 -2.29 16 22 C -0.22 -2.56 10.81 -39.98 -0.43 -2.99 16 23 C 0.02 0.19 11.90 -16.79 -0.20 -0.01 16 24 N -0.51 -6.92 4.50 -10.56 -0.05 -6.97 16 25 H 0.42 5.85 6.14 -40.82 -0.25 5.60 16 26 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 27 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.40 6.47 8.33 -40.82 -0.34 6.13 16 34 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 321.52 15.07 4.85 4.85 Total: -1.00 -32.45 321.52 -8.91 -41.35 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.14 Total: 10.55 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -3.26 Total: -2.64 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.39 Total: -60.45 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.07 Total: -10.61 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.45 -8.91 -41.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269223163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.766 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds