Wall clock time and date at job start Mon Mar 30 2020 02:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00439 * 2 1 4 4 H 1.48497 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46907 * 300.00311 * 3 2 1 6 6 H 1.48501 * 109.46899 * 59.99683 * 3 2 1 7 7 C 1.38812 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00058 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.47066 * 136.05616 * 359.94937 * 9 7 2 11 11 C 1.53497 * 87.98416 * 207.15504 * 10 9 7 12 12 C 1.47057 * 136.05489 * 179.97438 * 9 7 2 13 13 H 1.09004 * 113.47215 * 267.68407 * 12 9 7 14 14 C 1.52996 * 113.47187 * 38.06832 * 12 9 7 15 15 N 1.46501 * 109.47161 * 285.49264 * 14 12 9 16 16 C 1.34778 * 120.00320 * 179.97438 * 15 14 12 17 17 O 1.21782 * 119.99686 * 0.02562 * 16 15 14 18 18 C 1.41515 * 120.00029 * 180.02562 * 16 15 14 19 19 C 1.35617 * 119.99961 * 188.36159 * 18 16 15 20 20 C 1.41678 * 120.00020 * 32.14699 * 19 18 16 21 21 C 1.38281 * 126.25960 * 187.22939 * 20 19 18 22 22 C 1.39785 * 107.07919 * 180.02562 * 21 20 19 23 23 C 1.35496 * 107.90976 * 0.02562 * 22 21 20 24 24 N 1.35755 * 108.91297 * 359.97438 * 23 22 21 25 25 H 0.96998 * 125.69566 * 179.73330 * 24 23 22 26 26 H 0.96999 * 119.99494 * 359.97438 * 1 2 3 27 27 H 1.08996 * 113.46773 * 321.93494 * 10 9 7 28 28 H 1.09005 * 113.46626 * 92.37207 * 10 9 7 29 29 H 1.08997 * 114.20458 * 220.34956 * 11 10 9 30 30 H 1.08994 * 114.20830 * 87.51969 * 11 10 9 31 31 H 1.09004 * 109.47530 * 165.49069 * 14 12 9 32 32 H 1.09001 * 109.47423 * 45.49259 * 14 12 9 33 33 H 0.97001 * 119.99697 * 0.02562 * 15 14 12 34 34 H 1.07991 * 120.00232 * 8.36114 * 18 16 15 35 35 H 1.08000 * 120.00119 * 212.16055 * 19 18 16 36 36 H 1.08004 * 126.46032 * 0.06776 * 21 20 19 37 37 H 1.07999 * 126.04848 * 180.02562 * 22 21 20 38 38 H 1.08005 * 125.54754 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 -0.0879 -2.7948 0.0033 11 6 0.3423 -4.0915 0.7032 12 6 1.6798 -3.8154 0.0020 13 1 1.7444 -4.2469 -0.9969 14 6 2.8996 -4.1402 0.8665 15 7 4.1154 -3.6902 0.1843 16 6 5.3193 -3.8724 0.7623 17 8 5.3963 -4.4114 1.8516 18 6 6.4937 -3.4372 0.1035 19 6 7.7117 -3.7685 0.5994 20 6 7.8901 -5.0009 1.2751 21 6 9.0272 -5.4069 1.9492 22 6 8.7677 -6.6813 2.4615 23 6 7.5080 -7.0267 2.1013 24 7 6.9633 -6.0138 1.3799 25 1 6.0716 -6.0066 0.9982 26 1 -0.4849 0.8401 0.0004 27 1 -0.7220 -2.1583 0.6203 28 1 -0.4947 -2.9549 -0.9952 29 1 -0.1730 -4.9836 0.3473 30 1 0.3842 -4.0200 1.7900 31 1 2.9523 -5.2165 1.0308 32 1 2.8113 -3.6302 1.8257 33 1 4.0540 -3.2606 -0.6832 34 1 6.4200 -2.8413 -0.7941 35 1 8.5456 -3.0928 0.4794 36 1 9.9428 -4.8449 2.0598 37 1 9.4506 -7.2842 3.0417 38 1 7.0170 -7.9565 2.3480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269223163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:42 Heat of formation + Delta-G solvation = 86.069020 kcal Electronic energy + Delta-G solvation = -20867.793338 eV Core-core repulsion = 17713.511459 eV Total energy + Delta-G solvation = -3154.281879 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.19316 -40.69239 -39.72001 -35.54661 -34.64123 -34.25121 -31.78718 -30.23551 -29.84607 -28.45821 -25.41815 -24.89235 -23.17573 -21.80597 -21.21222 -21.11956 -20.57939 -19.18250 -18.37082 -17.49615 -17.09977 -16.76093 -16.00568 -15.74276 -15.49080 -15.04673 -15.02937 -14.80209 -14.57696 -14.20467 -13.81054 -13.52838 -13.34710 -13.10803 -13.00486 -12.84508 -12.71912 -12.60225 -12.30683 -11.85622 -11.64248 -11.25433 -10.93488 -10.85825 -10.65745 -10.02490 -9.69477 -8.90876 -8.43683 -7.89267 -5.21006 -0.40896 1.42718 1.44175 1.52984 1.70847 2.05867 2.33828 2.46621 2.51033 2.68854 3.33564 3.43678 3.89509 4.05677 4.14756 4.19984 4.32481 4.37257 4.50731 4.54905 4.61414 4.67037 4.69664 4.85839 5.02419 5.06283 5.09504 5.14115 5.31206 5.40516 5.42960 5.50424 5.58000 5.72355 5.95545 6.08093 6.23986 6.63425 6.69146 6.92430 7.28467 7.62658 8.62125 9.28538 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.004463 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.107811 B = 6271.775792 C = 7280.561261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.072 4.072 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.299 1.299 7 C -0.207 4.207 8 H 0.087 0.913 9 N -0.629 5.629 10 C 0.142 3.858 11 C -0.135 4.135 12 C 0.133 3.867 13 H 0.069 0.931 14 C 0.133 3.867 15 N -0.710 5.710 16 C 0.537 3.463 17 O -0.595 6.595 18 C -0.306 4.306 19 C 0.055 3.945 20 C -0.026 4.026 21 C -0.150 4.150 22 C -0.230 4.230 23 C 0.012 3.988 24 N -0.519 5.519 25 H 0.414 0.586 26 H 0.245 0.755 27 H 0.034 0.966 28 H 0.023 0.977 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.406 0.594 34 H 0.151 0.849 35 H 0.178 0.822 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.800 -13.876 -0.426 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.265 4.265 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.227 1.227 7 C -0.335 4.335 8 H 0.105 0.895 9 N -0.356 5.356 10 C 0.016 3.984 11 C -0.173 4.173 12 C 0.026 3.974 13 H 0.086 0.914 14 C 0.007 3.993 15 N -0.358 5.358 16 C 0.332 3.668 17 O -0.481 6.481 18 C -0.328 4.328 19 C 0.035 3.965 20 C -0.137 4.137 21 C -0.175 4.175 22 C -0.254 4.254 23 C -0.127 4.127 24 N -0.114 5.114 25 H 0.256 0.744 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.241 0.759 34 H 0.169 0.831 35 H 0.196 0.804 36 H 0.179 0.821 37 H 0.175 0.825 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 14.682 -13.865 0.217 20.195 hybrid contribution -0.685 1.633 -0.564 1.858 sum 13.997 -12.233 -0.347 18.592 Atomic orbital electron populations 1.70021 1.06343 1.25148 1.58903 1.25548 0.96451 1.00600 1.03866 0.85138 0.78366 0.80191 0.76493 1.18899 1.21936 1.22656 1.19254 0.90565 0.82500 1.41171 0.89541 1.45997 1.03621 1.00069 1.85866 1.22048 0.87834 0.92143 0.96341 1.23478 0.95913 0.98082 0.99844 1.22565 0.93075 0.84752 0.96958 0.91356 1.21528 0.83600 0.98755 0.95373 1.46002 1.06040 1.60793 1.22988 1.17597 0.84853 0.78530 0.85855 1.90794 1.88002 1.46679 1.22645 1.21953 0.92084 1.13617 1.05117 1.21236 0.98068 0.90317 0.86881 1.18707 0.91464 0.92469 1.11048 1.21879 0.98194 0.97334 1.00097 1.21165 0.97246 0.98454 1.08544 1.22665 0.96046 0.95238 0.98708 1.42805 1.14558 1.13755 1.40265 0.74385 0.94601 0.94705 0.95934 0.88152 0.90448 0.90233 0.94544 0.75867 0.83100 0.80439 0.82055 0.82497 0.79563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.70 11.51 21.65 0.25 -57.45 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.97 45.91 29.55 68.60 2.03 47.93 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 7 C -0.21 -11.09 10.55 84.03 0.89 -10.20 16 8 H 0.09 4.42 7.50 -2.91 -0.02 4.40 16 9 N -0.63 -30.42 3.65 -713.87 -2.61 -33.03 16 10 C 0.14 6.51 7.39 83.18 0.61 7.12 16 11 C -0.13 -4.60 8.03 30.94 0.25 -4.35 16 12 C 0.13 4.81 4.10 41.80 0.17 4.98 16 13 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 14 C 0.13 4.55 5.52 86.38 0.48 5.02 16 15 N -0.71 -22.91 5.32 -472.21 -2.51 -25.42 16 16 C 0.54 17.30 6.32 85.05 0.54 17.84 16 17 O -0.59 -22.23 12.72 -4.61 -0.06 -22.29 16 18 C -0.31 -7.86 9.72 22.47 0.22 -7.64 16 19 C 0.06 1.25 9.77 22.51 0.22 1.46 16 20 C -0.03 -0.66 5.95 39.08 0.23 -0.43 16 21 C -0.15 -3.27 10.86 22.65 0.25 -3.03 16 22 C -0.23 -4.79 10.81 22.01 0.24 -4.55 16 23 C 0.01 0.26 11.90 83.45 0.99 1.25 16 24 N -0.52 -13.45 4.50 -187.33 -0.84 -14.30 16 25 H 0.41 11.25 6.14 -92.71 -0.57 10.68 16 26 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.03 1.84 7.12 -2.39 -0.02 1.82 16 28 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.08 2.70 8.12 -2.39 -0.02 2.68 16 31 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.41 12.60 8.33 -92.71 -0.77 11.83 16 34 H 0.15 3.23 8.06 -2.92 -0.02 3.21 16 35 H 0.18 2.61 8.06 -2.91 -0.02 2.58 16 36 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 38 H 0.19 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -71.59 321.52 1.54 -70.05 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.26 Total: 30.63 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 5.55 Total: 3.87 kcal Atomic # 7 Polarization: -124.48 SS G_CDS: -5.71 Total: -130.19 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.06 Total: -22.29 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -71.59 1.54 -70.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269223163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.117 kcal (2) G-P(sol) polarization free energy of solvation -71.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds