Wall clock time and date at job start Mon Mar 30 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86795 * 120.00230 * 2 1 4 4 H 1.48505 * 109.47493 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47402 * 300.00596 * 3 2 1 6 6 H 1.48503 * 109.47005 * 60.00384 * 3 2 1 7 7 C 1.38816 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00136 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00245 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47154 * 180.02562 * 10 9 7 12 12 H 1.09002 * 112.85093 * 316.19173 * 11 10 9 13 13 C 1.54047 * 113.62424 * 87.50684 * 11 10 9 14 14 C 1.53778 * 86.98745 * 139.97508 * 13 11 10 15 15 H 1.08998 * 113.61189 * 219.98029 * 14 13 11 16 16 N 1.46500 * 113.61042 * 89.16454 * 14 13 11 17 17 C 1.34778 * 120.00278 * 105.86385 * 16 14 13 18 18 O 1.21516 * 119.99557 * 359.97438 * 17 16 14 19 19 C 1.48160 * 120.00249 * 179.97438 * 17 16 14 20 20 C 1.39313 * 119.72712 * 179.97438 * 19 17 16 21 21 C 1.38583 * 119.06035 * 179.97438 * 20 19 17 22 22 C 1.38622 * 118.49264 * 0.02562 * 21 20 19 23 23 C 1.38566 * 119.35053 * 359.97438 * 22 21 20 24 24 N 1.31519 * 120.90104 * 0.28287 * 23 22 21 25 25 C 1.53776 * 87.17396 * 334.57208 * 14 13 11 26 26 H 0.96999 * 119.99965 * 359.97438 * 1 2 3 27 27 H 0.97008 * 119.99984 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.46714 * 59.99772 * 10 9 7 29 29 H 1.09000 * 109.47004 * 300.00185 * 10 9 7 30 30 H 1.09007 * 113.61186 * 25.46832 * 13 11 10 31 31 H 1.08997 * 113.69321 * 254.49914 * 13 11 10 32 32 H 0.96998 * 120.00031 * 285.85720 * 16 14 13 33 33 H 1.07996 * 120.46582 * 0.02562 * 20 19 17 34 34 H 1.08004 * 120.75583 * 180.02562 * 21 20 19 35 35 H 1.07997 * 120.32639 * 180.02562 * 22 21 20 36 36 H 1.08002 * 119.54614 * 179.97438 * 23 22 21 37 37 H 1.08992 * 113.61626 * 140.02578 * 25 14 13 38 38 H 1.09004 * 113.61436 * 270.84265 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 1 0.2373 -4.6705 0.6939 13 6 0.6163 -5.2487 -1.4115 14 6 0.7050 -6.6997 -0.9100 15 1 1.1234 -7.3900 -1.6424 16 7 -0.5387 -7.1905 -0.3112 17 6 -1.3110 -8.0663 -0.9843 18 8 -0.9760 -8.4483 -2.0881 19 6 -2.5685 -8.5631 -0.3785 20 6 -3.3627 -9.4678 -1.0796 21 6 -4.5358 -9.9240 -0.4996 22 6 -4.8743 -9.4589 0.7616 23 6 -4.0367 -8.5592 1.4012 24 7 -2.9315 -8.1387 0.8256 25 6 1.7302 -6.2001 0.1216 26 1 -0.4850 0.8400 0.0004 27 1 0.3554 -2.3881 -0.0005 28 1 2.6846 -3.7145 0.8894 29 1 2.6846 -3.7146 -0.8905 30 1 1.3408 -5.0109 -2.1905 31 1 -0.3965 -4.9350 -1.6641 32 1 -0.8063 -6.8853 0.5698 33 1 -3.0680 -9.8094 -2.0607 34 1 -5.1719 -10.6259 -1.0185 35 1 -5.7816 -9.7952 1.2415 36 1 -4.2976 -8.1945 2.3837 37 1 1.6160 -6.6542 1.1059 38 1 2.7588 -6.2234 -0.2384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276927339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:53 Heat of formation + Delta-G solvation = 8.077078 kcal Electronic energy + Delta-G solvation = -20054.846622 eV Core-core repulsion = 16897.182759 eV Total energy + Delta-G solvation = -3157.663864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.74814 -40.65381 -39.24150 -36.36116 -34.65483 -33.45573 -32.80983 -32.21615 -28.58896 -26.65726 -26.07376 -24.97624 -24.40987 -22.96480 -22.10385 -20.32678 -19.21795 -19.06267 -17.75829 -16.97535 -16.84345 -16.55162 -16.32588 -16.11670 -15.65222 -15.57366 -15.11357 -14.83442 -14.72118 -14.31692 -14.10266 -13.71325 -13.39402 -13.12749 -12.92726 -12.91113 -12.72658 -12.12655 -11.93850 -11.80249 -11.42205 -11.37975 -11.17349 -10.95944 -10.87653 -10.55564 -10.30924 -10.01859 -8.98254 -7.95030 -5.23655 -0.37617 0.25890 1.46694 1.47930 1.58119 1.64901 1.99322 2.56053 2.86295 3.10666 3.37886 3.55512 3.58604 3.79894 3.91505 3.93234 3.97934 4.05346 4.10334 4.32217 4.47430 4.55541 4.72458 4.77110 4.82971 4.86314 4.90458 4.96940 5.06327 5.13473 5.16306 5.25604 5.34036 5.49014 5.61573 5.65444 6.27656 6.34895 6.78182 7.06925 7.33231 8.11075 8.33543 9.28999 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026320 B = 0.003153 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.559450 B = 8878.213150 C = 9486.681791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.747 5.747 10 C 0.161 3.839 11 C -0.112 4.112 12 H 0.080 0.920 13 C -0.141 4.141 14 C 0.121 3.879 15 H 0.101 0.899 16 N -0.684 5.684 17 C 0.567 3.433 18 O -0.570 6.570 19 C 0.048 3.952 20 C -0.123 4.123 21 C -0.079 4.079 22 C -0.134 4.134 23 C 0.087 3.913 24 N -0.482 5.482 25 C -0.114 4.114 26 H 0.251 0.749 27 H 0.372 0.628 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.416 0.584 33 H 0.144 0.856 34 H 0.176 0.824 35 H 0.181 0.819 36 H 0.190 0.810 37 H 0.089 0.911 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 -23.999 2.794 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.389 5.389 10 C 0.035 3.965 11 C -0.131 4.131 12 H 0.098 0.902 13 C -0.180 4.180 14 C 0.016 3.984 15 H 0.119 0.881 16 N -0.334 5.334 17 C 0.353 3.647 18 O -0.449 6.449 19 C -0.089 4.089 20 C -0.144 4.144 21 C -0.105 4.105 22 C -0.154 4.154 23 C -0.073 4.073 24 N -0.194 5.194 25 C -0.152 4.152 26 H 0.059 0.941 27 H 0.203 0.797 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.254 0.746 33 H 0.162 0.838 34 H 0.194 0.806 35 H 0.198 0.802 36 H 0.206 0.794 37 H 0.107 0.893 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.726 -23.566 2.425 24.918 hybrid contribution -0.675 0.944 -0.206 1.179 sum -8.401 -22.622 2.220 24.233 Atomic orbital electron populations 1.69834 1.06693 1.25958 1.59751 1.25606 0.96438 1.01236 1.03850 0.85046 0.78245 0.79647 0.76665 1.18932 1.22107 1.21906 1.19715 0.91549 0.85466 1.40862 0.90581 1.42616 1.05598 1.01373 1.89305 1.20821 0.93658 0.84372 0.97663 1.22724 0.98514 0.94547 0.97316 0.90162 1.23467 1.01249 0.95773 0.97506 1.21893 0.84787 0.94673 0.97048 0.88127 1.45539 1.22388 1.43834 1.21638 1.18319 0.83351 0.78593 0.84388 1.90740 1.73236 1.60149 1.20782 1.20970 0.96059 0.98840 0.93007 1.22285 0.95069 0.95654 1.01362 1.22071 0.94876 0.98172 0.95338 1.22866 1.01423 0.95917 0.95177 1.23443 0.88884 0.94083 1.00915 1.67495 1.18665 1.23908 1.09319 1.23219 0.99050 0.93300 0.99677 0.94059 0.79656 0.95900 0.95873 0.89020 0.93418 0.74645 0.83817 0.80646 0.80192 0.79364 0.89269 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 2 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 3 Si 0.98 47.13 29.55 68.60 2.03 49.15 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 7 C -0.24 -14.04 9.99 84.03 0.84 -13.20 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.75 -39.33 5.60 -343.46 -1.92 -41.25 16 10 C 0.16 6.52 6.10 86.38 0.53 7.04 16 11 C -0.11 -3.63 3.65 -10.18 -0.04 -3.66 16 12 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 13 C -0.14 -4.51 7.45 31.21 0.23 -4.28 16 14 C 0.12 3.26 4.29 45.52 0.20 3.46 16 15 H 0.10 2.75 7.50 -2.39 -0.02 2.73 16 16 N -0.68 -18.46 5.25 -442.62 -2.33 -20.78 16 17 C 0.57 16.63 7.81 86.88 0.68 17.31 16 18 O -0.57 -19.69 15.94 -3.77 -0.06 -19.75 16 19 C 0.05 1.17 6.75 41.91 0.28 1.46 16 20 C -0.12 -2.36 9.63 22.61 0.22 -2.14 16 21 C -0.08 -0.90 10.17 22.44 0.23 -0.67 16 22 C -0.13 -1.25 10.11 22.44 0.23 -1.03 16 23 C 0.09 1.23 11.18 84.82 0.95 2.18 16 24 N -0.48 -10.58 9.54 -184.91 -1.76 -12.35 16 25 C -0.11 -2.73 7.38 31.12 0.23 -2.50 16 26 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 27 H 0.37 20.97 7.67 -92.70 -0.71 20.26 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.02 0.94 7.85 -2.39 -0.02 0.92 16 30 H 0.09 2.90 7.90 -2.38 -0.02 2.88 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.42 10.45 8.03 -92.71 -0.74 9.71 16 33 H 0.14 2.76 7.64 -2.91 -0.02 2.74 16 34 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 35 H 0.18 0.25 8.06 -2.91 -0.02 0.22 16 36 H 0.19 1.54 8.06 -2.91 -0.02 1.51 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 38 H 0.11 2.38 8.10 -2.38 -0.02 2.36 16 Total: -1.00 -75.18 327.86 0.90 -74.28 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: -0.37 Total: 31.74 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 5.04 Total: -0.24 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -5.73 Total: -135.18 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.06 Total: -19.75 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.15 kcal Total: -75.18 0.90 -74.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276927339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.359 kcal (2) G-P(sol) polarization free energy of solvation -75.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds