Wall clock time and date at job start Mon Mar 30 2020 01:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99741 * 2 1 4 4 H 1.48494 * 109.47210 * 269.99720 * 3 2 1 5 5 H 1.48501 * 109.47136 * 29.99931 * 3 2 1 6 6 H 1.48505 * 109.46919 * 149.99869 * 3 2 1 7 7 C 1.37879 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00054 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99559 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.46679 * 180.02562 * 9 7 2 11 11 C 1.46895 * 110.99902 * 66.05034 * 10 9 7 12 12 C 1.50701 * 109.47126 * 63.29182 * 11 10 9 13 13 N 1.27638 * 125.77018 * 356.40748 * 12 11 10 14 14 O 1.41379 * 113.17119 * 179.67439 * 13 12 11 15 15 C 1.44250 * 107.50635 * 17.37560 * 14 13 12 16 16 C 1.51689 * 125.76696 * 176.09999 * 12 11 10 17 17 C 1.46906 * 110.99606 * 190.00225 * 10 9 7 18 18 C 1.50705 * 109.46803 * 164.27117 * 17 10 9 19 19 C 1.38224 * 119.61792 * 95.40528 * 18 17 10 20 20 C 1.38627 * 119.15976 * 179.70070 * 19 18 17 21 21 C 1.38671 * 118.42199 * 0.51582 * 20 19 18 22 22 C 1.38184 * 119.15950 * 359.50606 * 21 20 19 23 23 N 1.31856 * 119.61841 * 275.38318 * 18 17 10 24 24 H 0.96994 * 120.00173 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47083 * 60.00359 * 9 7 2 26 26 H 1.08999 * 109.47154 * 300.00273 * 9 7 2 27 27 H 1.09000 * 109.47063 * 183.29144 * 11 10 9 28 28 H 1.08997 * 109.46997 * 303.29158 * 11 10 9 29 29 H 1.09003 * 111.01252 * 92.95805 * 15 14 13 30 30 H 1.09001 * 111.00765 * 216.78267 * 15 14 13 31 31 H 1.08996 * 110.80432 * 282.96807 * 16 12 11 32 32 H 1.09002 * 110.80281 * 46.47370 * 16 12 11 33 33 H 1.09000 * 109.47131 * 44.27006 * 17 10 9 34 34 H 1.08994 * 109.47384 * 284.26821 * 17 10 9 35 35 H 1.07999 * 120.41862 * 359.95459 * 19 18 17 36 36 H 1.08007 * 120.78946 * 180.27331 * 20 19 18 37 37 H 1.08001 * 120.41789 * 179.77984 * 21 20 19 38 38 H 1.08002 * 119.61261 * 180.25206 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5790 0.0001 11 6 3.6514 -3.2612 -1.2530 12 6 4.3388 -2.5768 -2.4063 13 7 5.0558 -1.5237 -2.3290 14 8 5.5789 -1.1141 -3.5769 15 6 4.8119 -1.7722 -4.6062 16 6 4.3009 -3.0269 -3.8544 17 6 5.4502 -2.6250 0.2377 18 6 5.8533 -4.0277 0.6135 19 6 6.3248 -4.8872 -0.3608 20 6 6.6988 -6.1734 -0.0035 21 6 6.5737 -6.5522 1.3246 22 6 6.0937 -5.6381 2.2431 23 7 5.7524 -4.4207 1.8681 24 1 -0.4850 0.8400 -0.0004 25 1 3.8753 -0.6796 0.8895 26 1 3.8746 -0.6807 -0.8905 27 1 3.9741 -4.3011 -1.2029 28 1 2.5719 -3.2223 -1.3986 29 1 3.9839 -1.1456 -4.9376 30 1 5.4464 -2.0542 -5.4464 31 1 4.9669 -3.8749 -4.0138 32 1 3.2826 -3.2706 -4.1575 33 1 5.7072 -1.9435 1.0486 34 1 5.9768 -2.3263 -0.6686 35 1 6.4048 -4.5596 -1.3868 36 1 7.0749 -6.8653 -0.7427 37 1 6.8522 -7.5475 1.6379 38 1 5.9972 -5.9241 3.2801 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307507697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:59 Heat of formation + Delta-G solvation = 81.154811 kcal Electronic energy + Delta-G solvation = -21498.639397 eV Core-core repulsion = 18344.144422 eV Total energy + Delta-G solvation = -3154.494975 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.29464 -39.71516 -36.99751 -32.74919 -32.70540 -32.18387 -31.27901 -30.33013 -28.02644 -27.36892 -24.39214 -23.36058 -22.99346 -21.61178 -20.96347 -19.02274 -17.05266 -16.58573 -16.52229 -16.05558 -15.90868 -15.42824 -15.02533 -14.69288 -14.10542 -13.89464 -13.42709 -13.31154 -13.09350 -12.91989 -12.72881 -12.39859 -12.15531 -11.84156 -11.65814 -11.37017 -11.27392 -11.06648 -10.61507 -10.52733 -10.24306 -9.82389 -9.75514 -9.31984 -9.15909 -9.02077 -8.88971 -8.52991 -7.51104 -6.03452 -4.00064 1.21236 1.39483 2.15479 3.35085 3.39013 3.42408 3.48122 3.90078 4.33099 4.47127 4.49074 4.70118 4.72674 4.82819 4.89651 4.94531 5.09528 5.12557 5.24513 5.31943 5.46161 5.60152 5.65923 5.68923 5.72401 5.78920 5.86878 6.04764 6.21175 6.23452 6.28434 6.38154 6.81494 6.89737 7.13029 7.57431 7.69027 7.81384 7.97025 8.24440 8.63420 9.02373 9.59030 11.09251 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014906 B = 0.006803 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.003525 B = 4114.726177 C = 5343.378659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.872 3.128 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.510 4.510 8 H 0.080 0.920 9 C 0.151 3.849 10 N -0.502 5.502 11 C 0.122 3.878 12 C 0.064 3.936 13 N -0.279 5.279 14 O -0.221 6.221 15 C 0.012 3.988 16 C -0.152 4.152 17 C 0.085 3.915 18 C 0.155 3.845 19 C -0.172 4.172 20 C -0.077 4.077 21 C -0.186 4.186 22 C 0.100 3.900 23 N -0.464 5.464 24 H 0.263 0.737 25 H 0.031 0.969 26 H 0.018 0.982 27 H 0.087 0.913 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.596 -12.595 -5.641 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.130 4.130 3 Si 0.699 3.301 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.548 4.548 8 H 0.098 0.902 9 C 0.025 3.975 10 N -0.223 5.223 11 C -0.009 4.009 12 C -0.131 4.131 13 N -0.024 5.024 14 O -0.236 6.236 15 C -0.066 4.066 16 C -0.192 4.192 17 C -0.043 4.043 18 C 0.016 3.984 19 C -0.193 4.193 20 C -0.103 4.103 21 C -0.206 4.206 22 C -0.057 4.057 23 N -0.173 5.173 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.105 0.895 28 H 0.138 0.862 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.489 -11.172 -4.031 17.235 hybrid contribution 0.619 0.067 -2.067 2.159 sum 13.108 -11.105 -6.098 18.230 Atomic orbital electron populations 1.69889 1.06083 1.26820 1.51213 1.24829 0.94675 0.98781 0.94752 0.86901 0.80533 0.84050 0.78607 1.20378 1.21262 1.18880 1.21016 0.88650 0.94622 1.50505 0.90205 1.20504 0.96835 0.83204 0.96914 1.62077 1.09854 1.20509 1.29889 1.21297 1.01258 0.96236 0.82076 1.27815 0.94873 0.92572 0.97860 1.78117 1.10626 1.11657 1.02046 1.91224 1.54556 1.67177 1.10622 1.24058 0.96895 0.92727 0.92903 1.23175 1.04556 1.00109 0.91342 1.21244 0.90615 0.90795 1.01655 1.21394 0.92116 0.96468 0.88399 1.21971 1.01911 0.94732 1.00642 1.21493 0.96688 0.95835 0.96325 1.22073 1.03024 1.01132 0.94398 1.22803 0.93987 0.88972 0.99952 1.67582 1.13512 1.17225 1.18985 0.92722 0.95131 0.96460 0.89480 0.86194 0.90717 0.88463 0.88599 0.87985 0.89397 0.91545 0.85569 0.85301 0.85256 0.83040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 22.34 27.47 -169.99 -4.67 17.67 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.63 6.54 56.52 0.37 -6.26 16 7 C -0.51 -14.31 9.02 -34.44 -0.31 -14.62 16 8 H 0.08 2.39 7.36 -52.49 -0.39 2.00 16 9 C 0.15 3.70 3.52 -4.97 -0.02 3.68 16 10 N -0.50 -10.39 4.65 -238.96 -1.11 -11.50 16 11 C 0.12 2.13 5.56 -4.98 -0.03 2.10 16 12 C 0.06 1.06 6.22 -78.57 -0.49 0.57 16 13 N -0.28 -5.36 7.62 35.64 0.27 -5.08 16 14 O -0.22 -3.98 12.52 -11.36 -0.14 -4.13 16 15 C 0.01 0.16 8.25 38.18 0.31 0.48 16 16 C -0.15 -1.85 7.08 -26.37 -0.19 -2.03 16 17 C 0.09 1.57 5.00 -4.97 -0.02 1.54 16 18 C 0.15 2.51 5.81 -82.58 -0.48 2.03 16 19 C -0.17 -2.26 8.50 -39.44 -0.34 -2.59 16 20 C -0.08 -0.84 10.18 -39.28 -0.40 -1.24 16 21 C -0.19 -1.98 10.11 -39.44 -0.40 -2.38 16 22 C 0.10 1.30 11.18 -17.55 -0.20 1.10 16 23 N -0.46 -7.75 10.27 -9.47 -0.10 -7.85 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.03 0.79 6.92 -51.93 -0.36 0.43 16 26 H 0.02 0.45 4.86 -51.93 -0.25 0.19 16 27 H 0.09 1.29 6.57 -51.93 -0.34 0.95 16 28 H 0.12 2.28 6.77 -51.93 -0.35 1.93 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.70 7.81 -51.93 -0.41 1.30 16 34 H 0.07 1.20 5.28 -51.93 -0.27 0.93 16 35 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 311.85 15.07 4.70 4.70 Total: -1.00 -33.76 311.85 -7.84 -41.60 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.92 Total: 0.76 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -2.65 Total: -9.38 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.16 Total: -51.22 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.14 Total: -4.13 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.76 -7.84 -41.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307507697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.756 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds