Wall clock time and date at job start Mon Mar 30 2020 01:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00147 * 2 1 4 4 H 1.48499 * 109.47162 * 270.00445 * 3 2 1 5 5 H 1.48493 * 109.47071 * 30.00471 * 3 2 1 6 6 H 1.48497 * 109.47150 * 150.00550 * 3 2 1 7 7 C 1.37882 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99481 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00360 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47433 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47116 * 179.97438 * 10 9 7 12 12 C 1.48106 * 110.99905 * 284.99426 * 11 10 9 13 13 C 1.51019 * 105.70061 * 213.31005 * 12 11 10 14 14 N 1.32334 * 132.62207 * 197.33259 * 13 12 11 15 15 C 1.31853 * 120.77712 * 180.02562 * 14 13 12 16 16 C 1.50705 * 119.01797 * 179.97438 * 15 14 13 17 17 C 1.53005 * 117.49444 * 188.64686 * 16 15 14 18 18 C 1.53003 * 117.49223 * 120.02830 * 16 15 14 19 19 N 1.31791 * 121.95799 * 0.02562 * 15 14 13 20 20 C 1.32944 * 120.71291 * 359.97438 * 19 15 14 21 21 O 1.35519 * 120.63479 * 179.97438 * 20 19 15 22 22 C 1.38255 * 108.22877 * 17.36465 * 13 12 11 23 23 C 1.48136 * 110.99623 * 170.00070 * 11 10 9 24 24 H 0.96998 * 119.99460 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47421 * 59.99717 * 9 7 2 26 26 H 1.09003 * 109.46883 * 299.99572 * 9 7 2 27 27 H 1.08997 * 109.46922 * 59.99567 * 10 9 7 28 28 H 1.09003 * 109.46864 * 299.99739 * 10 9 7 29 29 H 1.09006 * 110.20586 * 332.36135 * 12 11 10 30 30 H 1.08994 * 110.20728 * 94.25094 * 12 11 10 31 31 H 1.09002 * 115.55320 * 334.35571 * 16 15 14 32 32 H 1.08994 * 117.50137 * 0.02562 * 17 16 15 33 33 H 1.09004 * 117.49156 * 145.02443 * 17 16 15 34 34 H 1.09004 * 117.49495 * 214.97809 * 18 16 15 35 35 H 1.08995 * 117.50120 * 359.97438 * 18 16 15 36 36 H 0.96705 * 113.99807 * 270.02315 * 21 20 19 37 37 H 1.08999 * 110.21157 * 265.70193 * 23 11 10 38 38 H 1.08998 * 110.21538 * 27.61619 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 7 5.4906 -2.6366 -0.0022 12 6 6.0202 -2.2794 -1.3384 13 6 7.3008 -3.0645 -1.4936 14 7 8.3333 -2.9422 -2.3124 15 6 9.3516 -3.7770 -2.2434 16 6 10.5065 -3.6015 -3.1956 17 6 11.5706 -4.7005 -3.2256 18 6 11.8882 -3.3453 -2.5905 19 7 9.3891 -4.7608 -1.3673 20 6 8.3885 -4.9468 -0.5120 21 8 8.4284 -5.9592 0.3879 22 6 7.2997 -4.0831 -0.5588 23 6 6.0216 -3.9985 0.2380 24 1 -0.4849 0.8401 0.0004 25 1 3.8753 -0.6805 0.8888 26 1 3.8745 -0.6801 -0.8912 27 1 3.6578 -3.1507 -0.8907 28 1 3.6586 -3.1502 0.8893 29 1 5.3084 -2.5631 -2.1137 30 1 6.2258 -1.2102 -1.3883 31 1 10.2690 -3.1046 -4.1363 32 1 11.4351 -5.5506 -2.5570 33 1 12.0332 -4.9269 -4.1863 34 1 12.5599 -2.6801 -3.1332 35 1 11.9618 -3.3032 -1.5038 36 1 8.0422 -6.7858 0.0674 37 1 6.2289 -4.1402 1.2987 38 1 5.3101 -4.7471 -0.1106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308050528.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:44 Heat of formation + Delta-G solvation = 51.868340 kcal Electronic energy + Delta-G solvation = -20489.257620 eV Core-core repulsion = 17333.492688 eV Total energy + Delta-G solvation = -3155.764932 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.79848 -38.65645 -38.12186 -36.67710 -33.75643 -33.00438 -31.86894 -29.55177 -28.60892 -26.13673 -24.22318 -23.44858 -22.61611 -21.68728 -21.05727 -20.15768 -19.03209 -18.11053 -16.77132 -16.46281 -16.01715 -15.47797 -15.21735 -14.73381 -14.44835 -14.03571 -13.83469 -13.56070 -13.12487 -12.70712 -12.66870 -12.51581 -12.19722 -12.07632 -11.77054 -11.55743 -11.04636 -10.96317 -10.88804 -10.71744 -10.55662 -10.05431 -10.00063 -9.84061 -9.44459 -9.34604 -9.21345 -8.57344 -8.24092 -6.08669 -4.07951 0.59208 0.76421 3.01797 3.17862 3.26699 3.30578 3.38580 3.44248 3.81387 4.05719 4.09312 4.36811 4.43260 4.52176 4.57263 4.72398 4.89276 4.97820 5.26025 5.36826 5.37714 5.42624 5.45156 5.51903 5.71015 5.74662 5.81914 5.90837 5.92752 6.03727 6.07776 6.57666 6.72583 6.84437 6.91952 7.10517 7.29034 7.45084 7.75144 7.88797 8.46304 8.94255 9.53423 11.04419 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029358 B = 0.003685 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.508821 B = 7595.862469 C = 8292.901676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.006 4.006 10 C 0.059 3.941 11 N -0.501 5.501 12 C 0.083 3.917 13 C 0.190 3.810 14 N -0.507 5.507 15 C 0.372 3.628 16 C -0.100 4.100 17 C -0.153 4.153 18 C -0.155 4.155 19 N -0.536 5.536 20 C 0.378 3.622 21 O -0.472 6.472 22 C -0.229 4.229 23 C 0.088 3.912 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.012 0.988 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.406 0.594 37 H 0.098 0.902 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.744 -11.017 -5.129 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.044 4.044 10 C -0.067 4.067 11 N -0.226 5.226 12 C -0.045 4.045 13 C 0.043 3.957 14 N -0.223 5.223 15 C 0.105 3.895 16 C -0.120 4.120 17 C -0.191 4.191 18 C -0.193 4.193 19 N -0.261 5.261 20 C 0.191 3.809 21 O -0.279 6.279 22 C -0.235 4.235 23 C -0.041 4.041 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.031 0.969 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.128 0.872 31 H 0.150 0.850 32 H 0.128 0.872 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.265 0.735 37 H 0.116 0.884 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 21.690 -10.051 -4.888 24.400 hybrid contribution -0.901 -0.180 -0.237 0.949 sum 20.788 -10.232 -5.125 23.730 Atomic orbital electron populations 1.69909 1.06343 1.27028 1.50817 1.24986 0.94715 0.99221 0.94334 0.86779 0.80557 0.83441 0.78602 1.20264 1.21376 1.18663 1.21033 0.89212 0.94574 1.51489 0.91052 1.19532 0.96589 0.91097 0.97171 1.22501 0.82074 1.01366 1.00794 1.65577 1.11970 1.20651 1.24360 1.21762 0.89298 1.00941 0.92531 1.22285 0.93482 0.92045 0.87882 1.67320 1.01020 1.27343 1.26595 1.21845 0.92047 0.84930 0.90666 1.20630 0.86066 1.06646 0.98686 1.23034 0.99835 0.93176 1.03034 1.23002 0.95318 0.99791 1.01197 1.67705 1.28629 1.23638 1.06107 1.18701 0.86765 0.89077 0.86353 1.84725 1.84103 1.22551 1.36570 1.22374 0.98633 1.00513 1.02013 1.21456 0.90252 0.92061 1.00331 0.92644 0.95412 0.96941 0.94446 0.90463 0.89824 0.87223 0.84951 0.87247 0.88057 0.87740 0.88534 0.73540 0.88361 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C -0.01 -0.14 4.16 -27.89 -0.12 -0.26 16 10 C 0.06 1.11 4.61 -3.82 -0.02 1.09 16 11 N -0.50 -8.31 5.44 -235.09 -1.28 -9.58 16 12 C 0.08 1.29 5.96 -4.16 -0.02 1.26 16 13 C 0.19 2.88 7.49 -82.21 -0.62 2.26 16 14 N -0.51 -7.65 10.34 -6.96 -0.07 -7.72 16 15 C 0.37 5.04 7.31 -157.14 -1.15 3.89 16 16 C -0.10 -1.02 6.23 -91.77 -0.57 -1.60 16 17 C -0.15 -1.24 10.01 -26.73 -0.27 -1.51 16 18 C -0.15 -1.32 10.23 -26.73 -0.27 -1.59 16 19 N -0.54 -7.24 9.37 -10.82 -0.10 -7.35 16 20 C 0.38 4.97 7.84 -16.77 -0.13 4.83 16 21 O -0.47 -4.98 13.58 -18.25 -0.25 -5.23 16 22 C -0.23 -3.21 6.28 -104.24 -0.65 -3.87 16 23 C 0.09 1.20 6.58 -4.22 -0.03 1.17 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 26 H 0.01 0.28 7.13 -51.93 -0.37 -0.09 16 27 H 0.04 0.68 7.67 -51.93 -0.40 0.28 16 28 H 0.08 1.42 8.08 -51.93 -0.42 1.00 16 29 H 0.08 1.25 7.52 -51.93 -0.39 0.86 16 30 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.11 1.00 7.53 -51.93 -0.39 0.61 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.41 2.12 9.06 45.56 0.41 2.53 16 37 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.07 0.81 7.81 -51.93 -0.41 0.41 16 LS Contribution 319.91 15.07 4.82 4.82 Total: -1.00 -32.69 319.91 -9.51 -42.21 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.46 Total: -0.05 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -4.28 Total: -7.27 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.68 Total: -51.32 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.25 Total: -5.23 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.69 -9.51 -42.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308050528.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.076 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds