Wall clock time and date at job start Mon Mar 30 2020 01:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00147 * 2 1 4 4 H 1.48499 * 109.47162 * 270.00445 * 3 2 1 5 5 H 1.48493 * 109.47071 * 30.00471 * 3 2 1 6 6 H 1.48497 * 109.47150 * 150.00550 * 3 2 1 7 7 C 1.37882 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99481 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00360 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47433 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47116 * 179.97438 * 10 9 7 12 12 C 1.48106 * 110.99905 * 284.99426 * 11 10 9 13 13 C 1.51019 * 105.70061 * 213.31005 * 12 11 10 14 14 N 1.32334 * 132.62207 * 197.33259 * 13 12 11 15 15 C 1.31853 * 120.77712 * 180.02562 * 14 13 12 16 16 C 1.50705 * 119.01797 * 179.97438 * 15 14 13 17 17 C 1.53005 * 117.49444 * 188.64686 * 16 15 14 18 18 C 1.53003 * 117.49223 * 120.02830 * 16 15 14 19 19 N 1.31791 * 121.95799 * 0.02562 * 15 14 13 20 20 C 1.32944 * 120.71291 * 359.97438 * 19 15 14 21 21 O 1.35519 * 120.63479 * 179.97438 * 20 19 15 22 22 C 1.38255 * 108.22877 * 17.36465 * 13 12 11 23 23 C 1.48136 * 110.99623 * 170.00070 * 11 10 9 24 24 H 0.96998 * 119.99460 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47421 * 59.99717 * 9 7 2 26 26 H 1.09003 * 109.46883 * 299.99572 * 9 7 2 27 27 H 1.08997 * 109.46922 * 59.99567 * 10 9 7 28 28 H 1.09003 * 109.46864 * 299.99739 * 10 9 7 29 29 H 1.09006 * 110.20586 * 332.36135 * 12 11 10 30 30 H 1.08994 * 110.20728 * 94.25094 * 12 11 10 31 31 H 1.09002 * 115.55320 * 334.35571 * 16 15 14 32 32 H 1.08994 * 117.50137 * 0.02562 * 17 16 15 33 33 H 1.09004 * 117.49156 * 145.02443 * 17 16 15 34 34 H 1.09004 * 117.49495 * 214.97809 * 18 16 15 35 35 H 1.08995 * 117.50120 * 359.97438 * 18 16 15 36 36 H 0.96705 * 113.99807 * 270.02315 * 21 20 19 37 37 H 1.08999 * 110.21157 * 265.70193 * 23 11 10 38 38 H 1.08998 * 110.21538 * 27.61619 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 7 5.4906 -2.6366 -0.0022 12 6 6.0202 -2.2794 -1.3384 13 6 7.3008 -3.0645 -1.4936 14 7 8.3333 -2.9422 -2.3124 15 6 9.3516 -3.7770 -2.2434 16 6 10.5065 -3.6015 -3.1956 17 6 11.5706 -4.7005 -3.2256 18 6 11.8882 -3.3453 -2.5905 19 7 9.3891 -4.7608 -1.3673 20 6 8.3885 -4.9468 -0.5120 21 8 8.4284 -5.9592 0.3879 22 6 7.2997 -4.0831 -0.5588 23 6 6.0216 -3.9985 0.2380 24 1 -0.4849 0.8401 0.0004 25 1 3.8753 -0.6805 0.8888 26 1 3.8745 -0.6801 -0.8912 27 1 3.6578 -3.1507 -0.8907 28 1 3.6586 -3.1502 0.8893 29 1 5.3084 -2.5631 -2.1137 30 1 6.2258 -1.2102 -1.3883 31 1 10.2690 -3.1046 -4.1363 32 1 11.4351 -5.5506 -2.5570 33 1 12.0332 -4.9269 -4.1863 34 1 12.5599 -2.6801 -3.1332 35 1 11.9618 -3.3032 -1.5038 36 1 8.0422 -6.7858 0.0674 37 1 6.2289 -4.1402 1.2987 38 1 5.3101 -4.7471 -0.1106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308050528.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:43 Heat of formation + Delta-G solvation = 26.221303 kcal Electronic energy + Delta-G solvation = -20490.369759 eV Core-core repulsion = 17333.492688 eV Total energy + Delta-G solvation = -3156.877071 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.83432 -39.77851 -38.98402 -37.54702 -35.49409 -34.24082 -33.43729 -31.10047 -29.73314 -27.54110 -25.44831 -24.67908 -23.26623 -22.97450 -22.17213 -21.57344 -19.95475 -19.29140 -18.74731 -17.34670 -17.03734 -16.63777 -16.41137 -16.20749 -15.51887 -15.27766 -15.09227 -14.88558 -14.61706 -14.30026 -13.96739 -13.62060 -13.35689 -13.27540 -13.04125 -12.80596 -12.39412 -12.01218 -11.89916 -11.85270 -11.66651 -11.62657 -11.54272 -11.41802 -11.40256 -10.75256 -10.49345 -10.32641 -9.46923 -8.28937 -6.32866 -0.41668 -0.28064 1.37659 1.40244 1.52529 2.11026 2.24270 2.25955 2.37492 2.86519 3.05007 3.05773 3.07561 3.30390 3.53770 3.83761 3.96672 4.05081 4.11765 4.23536 4.29388 4.35212 4.50482 4.52229 4.62083 4.72440 4.77325 4.90905 4.94023 5.07162 5.14872 5.23904 5.29723 5.33788 5.62275 5.64850 5.73683 5.91150 6.27396 6.41963 6.75108 6.86378 7.32301 8.87399 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029358 B = 0.003685 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.508821 B = 7595.862469 C = 8292.901676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.946 3.054 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.249 1.249 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.002 4.002 10 C 0.073 3.927 11 N -0.512 5.512 12 C 0.084 3.916 13 C 0.176 3.824 14 N -0.527 5.527 15 C 0.365 3.635 16 C -0.122 4.122 17 C -0.137 4.137 18 C -0.148 4.148 19 N -0.542 5.542 20 C 0.385 3.615 21 O -0.473 6.473 22 C -0.237 4.237 23 C 0.094 3.906 24 H 0.266 0.734 25 H 0.022 0.978 26 H 0.018 0.982 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.142 0.858 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.429 0.571 37 H 0.106 0.894 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.278 -11.324 -5.553 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.172 1.172 7 C -0.569 4.569 8 H 0.057 0.943 9 C -0.040 4.040 10 C -0.054 4.054 11 N -0.236 5.236 12 C -0.044 4.044 13 C 0.030 3.970 14 N -0.243 5.243 15 C 0.099 3.901 16 C -0.142 4.142 17 C -0.175 4.175 18 C -0.186 4.186 19 N -0.267 5.267 20 C 0.198 3.802 21 O -0.284 6.284 22 C -0.244 4.244 23 C -0.035 4.035 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.160 0.840 32 H 0.116 0.884 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.100 0.900 36 H 0.292 0.708 37 H 0.124 0.876 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 24.236 -10.397 -5.314 26.902 hybrid contribution -1.661 -0.221 -0.092 1.678 sum 22.575 -10.618 -5.406 25.527 Atomic orbital electron populations 1.70052 1.08209 1.28147 1.52629 1.25916 0.95515 1.03298 0.94148 0.85715 0.79528 0.78590 0.79198 1.19153 1.21126 1.17241 1.21385 0.91722 0.93328 1.50418 0.94330 1.19411 0.93478 0.94094 0.96970 1.22173 0.83721 0.98467 1.01052 1.65441 1.10217 1.22851 1.25117 1.21689 0.89848 1.00804 0.92104 1.22225 0.93549 0.92585 0.88672 1.67351 1.01536 1.28274 1.27124 1.22502 0.92363 0.84333 0.90877 1.20837 0.85793 1.08823 0.98699 1.23104 0.98138 0.92317 1.03939 1.23082 0.94240 1.00636 1.00632 1.67838 1.28702 1.23745 1.06432 1.18799 0.86197 0.89312 0.85942 1.84679 1.84327 1.23288 1.36098 1.22372 0.99117 1.00767 1.02104 1.21438 0.90408 0.90789 1.00825 0.92482 0.95927 0.96338 0.94219 0.90313 0.89601 0.87768 0.84008 0.88370 0.85416 0.85348 0.90001 0.70751 0.87592 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 2 C 0.01 0.48 5.47 84.66 0.46 0.95 16 3 Si 0.95 44.21 27.47 68.60 1.88 46.10 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 7 C -0.53 -29.74 9.66 25.60 0.25 -29.49 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 9 C 0.00 -0.08 4.16 29.85 0.12 0.05 16 10 C 0.07 2.68 4.61 86.30 0.40 3.08 16 11 N -0.51 -16.36 5.44 -897.69 -4.88 -21.24 16 12 C 0.08 2.54 5.96 85.43 0.51 3.05 16 13 C 0.18 5.20 7.49 42.59 0.32 5.51 16 14 N -0.53 -15.49 10.34 -175.92 -1.82 -17.31 16 15 C 0.37 9.48 7.31 138.74 1.01 10.50 16 16 C -0.12 -2.27 6.23 -11.54 -0.07 -2.34 16 17 C -0.14 -1.90 10.01 30.60 0.31 -1.59 16 18 C -0.15 -2.19 10.23 30.60 0.31 -1.88 16 19 N -0.54 -13.88 9.37 -300.74 -2.82 -16.70 16 20 C 0.38 9.47 7.84 84.72 0.66 10.14 16 21 O -0.47 -8.89 13.58 -88.22 -1.20 -10.09 16 22 C -0.24 -6.32 6.28 -19.62 -0.12 -6.44 16 23 C 0.09 2.40 6.58 85.37 0.56 2.97 16 24 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 25 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 26 H 0.02 0.82 7.13 -2.39 -0.02 0.80 16 27 H 0.04 1.43 7.67 -2.39 -0.02 1.41 16 28 H 0.08 2.84 8.08 -2.39 -0.02 2.83 16 29 H 0.09 2.52 7.52 -2.38 -0.02 2.51 16 30 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.10 1.61 7.53 -2.39 -0.02 1.59 16 33 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.43 3.35 9.06 -74.05 -0.67 2.68 16 37 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.08 1.86 7.81 -2.39 -0.02 1.84 16 Total: -1.00 -70.48 319.91 -3.45 -73.93 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.36 Total: 9.48 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 4.72 Total: -5.51 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -9.22 Total: -113.91 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -1.20 Total: -10.09 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.10 kcal Total: -70.48 -3.45 -73.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308050528.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.156 kcal (2) G-P(sol) polarization free energy of solvation -70.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds