Wall clock time and date at job start Mon Mar 30 2020 02:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86802 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47291 * 270.00154 * 3 2 1 5 5 H 1.48500 * 109.47293 * 30.00411 * 3 2 1 6 6 H 1.48508 * 109.46919 * 150.00280 * 3 2 1 7 7 C 1.40027 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.41314 * 119.99757 * 359.97438 * 7 2 1 10 10 C 1.40590 * 119.78687 * 180.02562 * 9 7 2 11 11 C 1.38346 * 119.14872 * 179.97438 * 10 9 7 12 12 C 1.38635 * 118.68263 * 359.74958 * 11 10 9 13 13 C 1.39756 * 119.48902 * 0.47820 * 12 11 10 14 14 N 1.38834 * 119.58534 * 179.78860 * 13 12 11 15 15 C 1.46846 * 110.99685 * 303.93623 * 14 13 12 16 16 C 1.53040 * 109.51964 * 174.15907 * 15 14 13 17 17 C 1.53119 * 109.28089 * 59.17912 * 16 15 14 18 18 C 1.50702 * 109.52418 * 182.43997 * 17 16 15 19 19 N 1.34773 * 119.99673 * 299.68412 * 18 17 16 20 20 O 1.21278 * 119.99712 * 119.67820 * 18 17 16 21 21 C 1.53124 * 109.15841 * 302.34776 * 17 16 15 22 22 C 1.46846 * 111.00090 * 179.72552 * 14 13 12 23 23 N 1.31977 * 120.83542 * 359.50933 * 13 12 11 24 24 H 0.97010 * 120.00494 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.42419 * 359.97438 * 10 9 7 26 26 H 1.08001 * 120.66050 * 180.02562 * 11 10 9 27 27 H 1.08000 * 120.25740 * 180.26889 * 12 11 10 28 28 H 1.08996 * 109.46231 * 294.17653 * 15 14 13 29 29 H 1.09004 * 109.46418 * 54.14493 * 15 14 13 30 30 H 1.09004 * 109.50602 * 299.23671 * 16 15 14 31 31 H 1.08998 * 109.50366 * 179.12192 * 16 15 14 32 32 H 1.08999 * 109.51878 * 62.24548 * 17 16 15 33 33 H 0.96999 * 120.00191 * 359.97438 * 19 18 17 34 34 H 0.96998 * 119.99500 * 180.02562 * 19 18 17 35 35 H 1.08999 * 109.49853 * 297.70868 * 21 17 16 36 36 H 1.08996 * 109.49839 * 177.59898 * 21 17 16 37 37 H 1.09001 * 109.45990 * 305.85574 * 22 14 13 38 38 H 1.08997 * 109.46419 * 65.82255 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4000 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4401 0.7000 7 6 2.0076 -1.2126 -0.0005 8 1 3.0875 -1.2126 -0.0010 9 6 1.3010 -2.4365 -0.0005 10 6 2.0085 -3.6514 -0.0005 11 6 1.3034 -4.8417 0.0000 12 6 -0.0821 -4.7944 0.0058 13 6 -0.7282 -3.5552 0.0008 14 7 -2.1156 -3.5055 0.0022 15 6 -2.6702 -4.2568 -1.1311 16 6 -4.1956 -4.3030 -1.0167 17 6 -4.7455 -2.8740 -1.0094 18 6 -6.2422 -2.9112 -0.8367 19 7 -7.0098 -3.5445 -1.7455 20 8 -6.7557 -2.3714 0.1203 21 6 -4.1155 -2.0989 0.1512 22 6 -2.5925 -2.1166 0.0029 23 7 -0.0361 -2.4314 0.0004 24 1 -0.4851 0.8401 0.0004 25 1 3.0884 -3.6554 -0.0010 26 1 1.8221 -5.7890 0.0004 27 1 -0.6578 -5.7082 0.0108 28 1 -2.3905 -3.7665 -2.0635 29 1 -2.2744 -5.2724 -1.1221 30 1 -4.4761 -4.8056 -0.0909 31 1 -4.6079 -4.8473 -1.8662 32 1 -4.4986 -2.3840 -1.9512 33 1 -6.5991 -3.9760 -2.5110 34 1 -7.9731 -3.5681 -1.6345 35 1 -4.3947 -2.5668 1.0952 36 1 -4.4708 -1.0686 0.1360 37 1 -2.1402 -1.5778 0.8355 38 1 -2.3133 -1.6363 -0.9348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319738991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:57 Heat of formation + Delta-G solvation = -4.467234 kcal Electronic energy + Delta-G solvation = -21383.534948 eV Core-core repulsion = 18225.327122 eV Total energy + Delta-G solvation = -3158.207826 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.05776 -38.82324 -36.97741 -34.00177 -33.62436 -32.68206 -30.83126 -30.02538 -28.93412 -25.87539 -24.77664 -22.88388 -21.49526 -20.92208 -20.17547 -19.23781 -17.58323 -17.42025 -16.54359 -16.15600 -15.02248 -14.78299 -14.63287 -14.50469 -14.12591 -13.88166 -13.40694 -13.24894 -12.82928 -12.61204 -12.17283 -12.08422 -11.73870 -11.22494 -11.12116 -11.00897 -10.71093 -10.65958 -10.58350 -10.44086 -10.10929 -9.95465 -9.75088 -9.66846 -9.42871 -8.69046 -8.02590 -7.59603 -6.94368 -6.42034 -4.52772 2.66597 2.73612 3.01613 3.08768 3.11425 3.21239 3.52280 3.93999 4.45418 4.73822 4.81193 4.92859 5.04008 5.40133 5.52520 5.70078 5.81550 5.84975 6.00299 6.04339 6.15516 6.22638 6.29047 6.33121 6.54973 6.65857 6.70106 6.77237 6.81166 6.95103 7.14471 7.17899 7.27342 7.49152 7.70202 7.79147 7.85029 8.18844 8.25526 8.37513 8.69911 8.98759 10.08477 10.29956 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.005436 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.465345 B = 5149.708350 C = 6362.443251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.432 4.432 8 H 0.083 0.917 9 C 0.275 3.725 10 C -0.296 4.296 11 C -0.045 4.045 12 C -0.323 4.323 13 C 0.322 3.678 14 N -0.481 5.481 15 C 0.067 3.933 16 C -0.104 4.104 17 C -0.110 4.110 18 C 0.523 3.477 19 N -0.860 5.860 20 O -0.542 6.542 21 C -0.100 4.100 22 C 0.080 3.920 23 N -0.507 5.507 24 H 0.271 0.729 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.400 0.600 34 H 0.397 0.603 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.981 -4.862 -5.639 11.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.153 4.153 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.463 4.463 8 H 0.101 0.899 9 C 0.149 3.851 10 C -0.319 4.319 11 C -0.069 4.069 12 C -0.348 4.348 13 C 0.084 3.916 14 N -0.200 5.200 15 C -0.060 4.060 16 C -0.142 4.142 17 C -0.132 4.132 18 C 0.309 3.691 19 N -0.424 5.424 20 O -0.419 6.419 21 C -0.139 4.139 22 C -0.047 4.047 23 N -0.225 5.225 24 H 0.082 0.918 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.228 0.772 34 H 0.227 0.773 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.937 -3.714 -4.523 11.533 hybrid contribution 0.871 -0.068 -1.039 1.357 sum -9.067 -3.782 -5.562 11.289 Atomic orbital electron populations 1.70100 1.07092 1.27553 1.28935 1.26021 0.94907 1.00892 0.93481 0.86364 0.80538 0.81003 0.79119 1.19548 1.20140 1.18621 1.19584 0.94206 0.89376 1.43177 0.89927 1.18331 0.87421 0.91932 0.87438 1.21636 0.98575 0.93503 1.18168 1.20694 0.93613 0.96539 0.96103 1.20683 0.94266 0.95875 1.23939 1.19803 0.88118 0.90477 0.93215 1.59105 1.05750 1.15122 1.39983 1.22035 0.93184 0.99163 0.91654 1.21595 0.95786 0.94278 1.02549 1.21478 0.90255 0.99037 1.02419 1.20848 0.90015 0.76666 0.81586 1.43939 1.10882 1.59173 1.28370 1.90726 1.75454 1.44989 1.30688 1.21570 0.95579 0.99709 0.96994 1.21832 0.91315 0.87604 1.03998 1.68657 1.07831 1.24821 1.21201 0.91759 0.88545 0.88669 0.88747 0.94449 0.90051 0.90590 0.91431 0.88731 0.77155 0.77303 0.90968 0.91189 0.88295 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.15 11.46 55.55 0.64 -17.52 16 2 C 0.07 1.79 5.50 -17.35 -0.10 1.70 16 3 Si 0.91 18.36 29.56 -169.99 -5.02 13.33 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.43 -11.38 9.14 -37.74 -0.34 -11.73 16 8 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 9 C 0.28 7.43 6.55 -84.99 -0.56 6.88 16 10 C -0.30 -7.28 9.83 -38.65 -0.38 -7.66 16 11 C -0.05 -1.01 10.15 -39.39 -0.40 -1.41 16 12 C -0.32 -7.28 9.20 -38.87 -0.36 -7.64 16 13 C 0.32 7.69 6.41 -155.31 -0.99 6.69 16 14 N -0.48 -9.72 4.67 -173.21 -0.81 -10.53 16 15 C 0.07 1.07 5.25 -3.83 -0.02 1.05 16 16 C -0.10 -1.29 5.26 -26.65 -0.14 -1.43 16 17 C -0.11 -1.47 2.59 -91.65 -0.24 -1.71 16 18 C 0.52 6.89 7.43 -10.99 -0.08 6.81 16 19 N -0.86 -7.27 8.78 31.22 0.27 -6.99 16 20 O -0.54 -9.48 16.81 5.56 0.09 -9.39 16 21 C -0.10 -1.67 4.68 -26.65 -0.12 -1.80 16 22 C 0.08 1.59 4.65 -3.84 -0.02 1.58 16 23 N -0.51 -13.45 6.16 -10.33 -0.06 -13.52 16 24 H 0.27 6.30 8.29 -40.82 -0.34 5.96 16 25 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 26 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 27 H 0.09 1.91 7.15 -52.49 -0.38 1.53 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.26 6.67 -51.93 -0.35 0.91 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.61 7.66 -51.93 -0.40 0.21 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.40 2.25 8.32 -40.82 -0.34 1.91 16 34 H 0.40 2.87 8.93 -40.82 -0.36 2.51 16 35 H 0.07 1.28 8.04 -51.93 -0.42 0.87 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.10 2.30 7.70 -51.93 -0.40 1.90 16 38 H 0.05 1.04 8.11 -51.93 -0.42 0.62 16 LS Contribution 312.77 15.07 4.71 4.71 Total: -1.00 -30.98 312.77 -9.08 -40.06 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.14 Total: 8.51 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -3.75 Total: -8.67 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.04 Total: -48.56 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.33 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.98 -9.08 -40.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319738991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.593 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds