Wall clock time and date at job start Mon Mar 30 2020 02:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86802 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47291 * 270.00154 * 3 2 1 5 5 H 1.48500 * 109.47293 * 30.00411 * 3 2 1 6 6 H 1.48508 * 109.46919 * 150.00280 * 3 2 1 7 7 C 1.40027 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.41314 * 119.99757 * 359.97438 * 7 2 1 10 10 C 1.40590 * 119.78687 * 180.02562 * 9 7 2 11 11 C 1.38346 * 119.14872 * 179.97438 * 10 9 7 12 12 C 1.38635 * 118.68263 * 359.74958 * 11 10 9 13 13 C 1.39756 * 119.48902 * 0.47820 * 12 11 10 14 14 N 1.38834 * 119.58534 * 179.78860 * 13 12 11 15 15 C 1.46846 * 110.99685 * 303.93623 * 14 13 12 16 16 C 1.53040 * 109.51964 * 174.15907 * 15 14 13 17 17 C 1.53119 * 109.28089 * 59.17912 * 16 15 14 18 18 C 1.50702 * 109.52418 * 182.43997 * 17 16 15 19 19 N 1.34773 * 119.99673 * 299.68412 * 18 17 16 20 20 O 1.21278 * 119.99712 * 119.67820 * 18 17 16 21 21 C 1.53124 * 109.15841 * 302.34776 * 17 16 15 22 22 C 1.46846 * 111.00090 * 179.72552 * 14 13 12 23 23 N 1.31977 * 120.83542 * 359.50933 * 13 12 11 24 24 H 0.97010 * 120.00494 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.42419 * 359.97438 * 10 9 7 26 26 H 1.08001 * 120.66050 * 180.02562 * 11 10 9 27 27 H 1.08000 * 120.25740 * 180.26889 * 12 11 10 28 28 H 1.08996 * 109.46231 * 294.17653 * 15 14 13 29 29 H 1.09004 * 109.46418 * 54.14493 * 15 14 13 30 30 H 1.09004 * 109.50602 * 299.23671 * 16 15 14 31 31 H 1.08998 * 109.50366 * 179.12192 * 16 15 14 32 32 H 1.08999 * 109.51878 * 62.24548 * 17 16 15 33 33 H 0.96999 * 120.00191 * 359.97438 * 19 18 17 34 34 H 0.96998 * 119.99500 * 180.02562 * 19 18 17 35 35 H 1.08999 * 109.49853 * 297.70868 * 21 17 16 36 36 H 1.08996 * 109.49839 * 177.59898 * 21 17 16 37 37 H 1.09001 * 109.45990 * 305.85574 * 22 14 13 38 38 H 1.08997 * 109.46419 * 65.82255 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4000 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4401 0.7000 7 6 2.0076 -1.2126 -0.0005 8 1 3.0875 -1.2126 -0.0010 9 6 1.3010 -2.4365 -0.0005 10 6 2.0085 -3.6514 -0.0005 11 6 1.3034 -4.8417 0.0000 12 6 -0.0821 -4.7944 0.0058 13 6 -0.7282 -3.5552 0.0008 14 7 -2.1156 -3.5055 0.0022 15 6 -2.6702 -4.2568 -1.1311 16 6 -4.1956 -4.3030 -1.0167 17 6 -4.7455 -2.8740 -1.0094 18 6 -6.2422 -2.9112 -0.8367 19 7 -7.0098 -3.5445 -1.7455 20 8 -6.7557 -2.3714 0.1203 21 6 -4.1155 -2.0989 0.1512 22 6 -2.5925 -2.1166 0.0029 23 7 -0.0361 -2.4314 0.0004 24 1 -0.4851 0.8401 0.0004 25 1 3.0884 -3.6554 -0.0010 26 1 1.8221 -5.7890 0.0004 27 1 -0.6578 -5.7082 0.0108 28 1 -2.3905 -3.7665 -2.0635 29 1 -2.2744 -5.2724 -1.1221 30 1 -4.4761 -4.8056 -0.0909 31 1 -4.6079 -4.8473 -1.8662 32 1 -4.4986 -2.3840 -1.9512 33 1 -6.5991 -3.9760 -2.5110 34 1 -7.9731 -3.5681 -1.6345 35 1 -4.3947 -2.5668 1.0952 36 1 -4.4708 -1.0686 0.1360 37 1 -2.1402 -1.5778 0.8355 38 1 -2.3133 -1.6363 -0.9348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319738991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:57 Heat of formation + Delta-G solvation = -26.358208 kcal Electronic energy + Delta-G solvation = -21384.484212 eV Core-core repulsion = 18225.327122 eV Total energy + Delta-G solvation = -3159.157090 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34308 -40.34137 -38.53475 -35.61164 -34.87333 -34.06201 -32.50107 -31.57154 -30.67951 -27.63450 -26.24662 -24.36166 -22.98595 -22.61649 -21.58797 -20.50976 -19.34761 -18.46903 -17.77691 -17.57404 -16.58045 -16.34907 -16.29553 -15.99368 -15.60119 -15.22051 -14.89278 -14.67371 -14.25247 -14.12034 -13.82669 -13.69262 -13.15170 -12.85426 -12.75716 -12.60241 -12.38403 -12.27587 -12.10952 -11.81895 -11.69863 -11.42112 -11.23691 -10.83140 -10.61664 -10.43989 -9.89079 -9.46690 -8.72393 -8.26589 -6.48233 0.91967 1.21841 1.40813 1.52448 1.54896 1.64196 2.23222 2.60900 2.80432 3.02244 3.66863 3.77041 3.92984 3.97898 4.17409 4.37623 4.39791 4.46696 4.55629 4.66005 4.73675 4.82043 4.83705 4.94616 4.95969 5.02073 5.11927 5.18293 5.29978 5.36055 5.45744 5.69911 5.92035 5.94394 6.02502 6.05336 6.36519 6.48572 6.52998 6.81412 7.08858 7.38413 8.21281 8.46207 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.005436 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.465345 B = 5149.708350 C = 6362.443251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.029 3.971 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.469 4.469 8 H 0.085 0.915 9 C 0.241 3.759 10 C -0.321 4.321 11 C -0.041 4.041 12 C -0.322 4.322 13 C 0.303 3.697 14 N -0.484 5.484 15 C 0.063 3.937 16 C -0.092 4.092 17 C -0.105 4.105 18 C 0.528 3.472 19 N -0.832 5.832 20 O -0.592 6.592 21 C -0.090 4.090 22 C 0.098 3.902 23 N -0.535 5.535 24 H 0.276 0.724 25 H 0.104 0.896 26 H 0.133 0.867 27 H 0.123 0.877 28 H 0.032 0.968 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.418 0.582 34 H 0.408 0.592 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.100 -6.228 -7.048 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.193 4.193 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.500 4.500 8 H 0.103 0.897 9 C 0.115 3.885 10 C -0.344 4.344 11 C -0.066 4.066 12 C -0.347 4.347 13 C 0.065 3.935 14 N -0.203 5.203 15 C -0.063 4.063 16 C -0.130 4.130 17 C -0.127 4.127 18 C 0.313 3.687 19 N -0.396 5.396 20 O -0.472 6.472 21 C -0.129 4.129 22 C -0.030 4.030 23 N -0.253 5.253 24 H 0.086 0.914 25 H 0.122 0.878 26 H 0.151 0.849 27 H 0.141 0.859 28 H 0.050 0.950 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.250 0.750 34 H 0.240 0.760 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -11.083 -5.142 -5.986 13.605 hybrid contribution 1.162 0.223 -0.619 1.335 sum -9.921 -4.919 -6.605 12.894 Atomic orbital electron populations 1.70209 1.08492 1.28647 1.29265 1.26866 0.95758 1.04060 0.92653 0.85212 0.79018 0.76180 0.79303 1.18812 1.19506 1.18243 1.19912 0.94587 0.90475 1.45037 0.89694 1.18811 0.88207 0.93268 0.88262 1.21811 0.99191 0.93803 1.19572 1.21102 0.93802 0.97351 0.94319 1.21038 0.94698 0.96366 1.22558 1.20357 0.89730 0.90640 0.92729 1.59200 1.04012 1.15188 1.41871 1.22225 0.95572 0.98761 0.89709 1.21590 0.92922 0.93909 1.04569 1.21383 0.90700 0.99354 1.01251 1.20646 0.89829 0.76648 0.81591 1.43659 1.11244 1.57183 1.27537 1.90722 1.76051 1.47472 1.32973 1.21382 0.93112 1.00171 0.98219 1.21503 0.93245 0.87276 1.00973 1.68642 1.07980 1.26458 1.22253 0.91352 0.87752 0.84899 0.85919 0.94953 0.88921 0.90964 0.86483 0.87151 0.74989 0.76037 0.92281 0.91684 0.92566 0.95522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.47 11.46 21.84 0.25 -39.22 16 2 C 0.03 1.48 5.50 85.29 0.47 1.95 16 3 Si 0.98 38.52 29.56 68.60 2.03 40.55 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.47 -25.68 9.14 23.46 0.21 -25.46 16 8 H 0.08 4.39 7.85 -2.92 -0.02 4.37 16 9 C 0.24 13.51 6.55 40.19 0.26 13.77 16 10 C -0.32 -16.03 9.83 22.87 0.22 -15.81 16 11 C -0.04 -1.82 10.15 22.39 0.23 -1.59 16 12 C -0.32 -14.14 9.20 22.73 0.21 -13.93 16 13 C 0.30 14.67 6.41 133.40 0.85 15.52 16 14 N -0.48 -19.63 4.67 -701.91 -3.28 -22.91 16 15 C 0.06 1.91 5.25 86.33 0.45 2.36 16 16 C -0.09 -1.98 5.26 30.65 0.16 -1.82 16 17 C -0.11 -2.60 2.59 -11.46 -0.03 -2.63 16 18 C 0.53 12.65 7.43 87.66 0.65 13.30 16 19 N -0.83 -10.90 8.78 -173.54 -1.52 -12.43 16 20 O -0.59 -20.14 16.81 -3.02 -0.05 -20.19 16 21 C -0.09 -3.06 4.68 30.65 0.14 -2.92 16 22 C 0.10 4.07 4.65 86.32 0.40 4.47 16 23 N -0.53 -29.46 6.16 -186.58 -1.15 -30.61 16 24 H 0.28 13.37 8.29 -92.70 -0.77 12.60 16 25 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 26 H 0.13 4.72 8.06 -2.91 -0.02 4.69 16 27 H 0.12 4.61 7.15 -2.91 -0.02 4.59 16 28 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 2.59 6.67 -2.38 -0.02 2.57 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.12 1.44 7.66 -2.39 -0.02 1.42 16 32 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.42 2.64 8.32 -92.71 -0.77 1.87 16 34 H 0.41 4.43 8.93 -92.71 -0.83 3.60 16 35 H 0.06 2.15 8.04 -2.39 -0.02 2.13 16 36 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.06 2.80 7.70 -2.39 -0.02 2.78 16 38 H 0.03 1.20 8.11 -2.39 -0.02 1.18 16 Total: -1.00 -71.61 312.77 0.01 -71.60 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -0.51 Total: 25.99 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 4.24 Total: -12.78 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -5.70 Total: -105.17 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.05 Total: -20.19 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -71.61 0.01 -71.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319738991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.244 kcal (2) G-P(sol) polarization free energy of solvation -71.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds